EWM25403.1, cds5254 (CDS) Nannochloropsis gaditana
|
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM25403.1 vs. NCBI_GenBank
Match: gi|585107164|gb|EWM25403.1| (glycoprotein fp21 [Nannochloropsis gaditana]) HSP 1 Score: 665.996 bits (1717), Expect = 0.000e+0 Identity = 319/319 (100.00%), Postives = 319/319 (100.00%), Query Frame = 0
Query: 1 MKDDHVLECAYQSDQPRRRLLAGTESQQCFQSCRLESIRKPFLDFRGSMGDKAKGAESGKVVHLVSQEGDQYEVEVSVCKMSELVKTMLPDDDDSSETQEIPLPNVKNNVLAKVIEFCKHHKEDPMNDIEKPLKSANMHEVVQDWYANFVNVDQELLFELILAANYMDIKPLLDLTCATVASMIKGKTPEEIRRTFNITNDFTPEEEAQVREENKWCEVRGVKATAMARTRTSGVLYFVQSVKPPNKEGLLCTESIVCPSRTTDKFCRRVCVLIDAGEPGQRERNVGRESRIQARGKGNERTKSFTTVTAVLSVETYSS 319
MKDDHVLECAYQSDQPRRRLLAGTESQQCFQSCRLESIRKPFLDFRGSMGDKAKGAESGKVVHLVSQEGDQYEVEVSVCKMSELVKTMLPDDDDSSETQEIPLPNVKNNVLAKVIEFCKHHKEDPMNDIEKPLKSANMHEVVQDWYANFVNVDQELLFELILAANYMDIKPLLDLTCATVASMIKGKTPEEIRRTFNITNDFTPEEEAQVREENKWCEVRGVKATAMARTRTSGVLYFVQSVKPPNKEGLLCTESIVCPSRTTDKFCRRVCVLIDAGEPGQRERNVGRESRIQARGKGNERTKSFTTVTAVLSVETYSS
Sbjct: 1 MKDDHVLECAYQSDQPRRRLLAGTESQQCFQSCRLESIRKPFLDFRGSMGDKAKGAESGKVVHLVSQEGDQYEVEVSVCKMSELVKTMLPDDDDSSETQEIPLPNVKNNVLAKVIEFCKHHKEDPMNDIEKPLKSANMHEVVQDWYANFVNVDQELLFELILAANYMDIKPLLDLTCATVASMIKGKTPEEIRRTFNITNDFTPEEEAQVREENKWCEVRGVKATAMARTRTSGVLYFVQSVKPPNKEGLLCTESIVCPSRTTDKFCRRVCVLIDAGEPGQRERNVGRESRIQARGKGNERTKSFTTVTAVLSVETYSS 319
BLAST of EWM25403.1 vs. NCBI_GenBank
Match: gi|298712647|emb|CBJ48672.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 267.7 bits (683), Expect = 5.692e-87 Identity = 127/167 (76.05%), Postives = 145/167 (86.83%), Query Frame = 0
Query: 53 AKGAESGKVVHLVSQEGDQYEVEVSVCKMSELVKTMLPDD-DDSSETQEIPLPNVKNNVLAKVIEFCKHHKEDPMNDIEKPLKSANMHEVVQDWYANFVNVDQELLFELILAANYMDIKPLLDLTCATVASMIKGKTPEEIRRTFNITNDFTPEEEAQVREENKWCE 218
A E + VHLVSQEG+ ++++VSV KMS LVKTM+ +D ++ + QEIPLPNVK +VL+KVIEFC H+KEDPMN+IEKPLKSANMH+VVQ+WYA FV V QE LFELILAANYMDIKPLLDLTCATVASMIKGKT EEIR+TFNI NDFTPEEEAQVREENKWCE
Sbjct: 15 ADETEDTRSVHLVSQEGESFDIKVSVAKMSNLVKTMIDEDAEEDGDAQEIPLPNVKASVLSKVIEFCAHYKEDPMNEIEKPLKSANMHDVVQEWYAKFVEVQQETLFELILAANYMDIKPLLDLTCATVASMIKGKTAEEIRKTFNIVNDFTPEEEAQVREENKWCE 181
BLAST of EWM25403.1 vs. NCBI_GenBank
Match: gi|676379847|ref|XP_009033202.1| (hypothetical protein AURANDRAFT_58667 [Aureococcus anophagefferens] >gi|323456247|gb|EGB12114.1| hypothetical protein AURANDRAFT_58667 [Aureococcus anophagefferens]) HSP 1 Score: 261.536 bits (667), Expect = 6.923e-85 Identity = 127/155 (81.94%), Postives = 144/155 (92.90%), Query Frame = 0
Query: 65 VSQEGDQYEVEVSVCKMSELVKTMLPDDDDSSETQE-IPLPNVKNNVLAKVIEFCKHHKEDPMNDIEKPLKSANMHEVVQDWYANFVNVDQELLFELILAANYMDIKPLLDLTCATVASMIKGKTPEEIRRTFNITNDFTPEEEAQVREENKWCE 218
+SQEGDQ+EVEV V KMSELVKTM+P++ D E + IPLPNVK++VLAKVIEFC+ + E+PM++IEKPLKSANMHEVVQ+WYAN+V+VDQELLFELILAANYMDIKPLLDLTCATVASMIKGKTPEEIR+TFNI NDFTPEEEAQVREENKWCE
Sbjct: 1 MSQEGDQFEVEVKVAKMSELVKTMIPEEADEEEEAQEIPLPNVKSHVLAKVIEFCRRYAEEPMSEIEKPLKSANMHEVVQEWYANYVDVDQELLFELILAANYMDIKPLLDLTCATVASMIKGKTPEEIRKTFNIVNDFTPEEEAQVREENKWCE 155
BLAST of EWM25403.1 vs. NCBI_GenBank
Match: gi|953498863|emb|CEG39913.1| (glycoprotein fp21 [Plasmopara halstedii]) HSP 1 Score: 254.218 bits (648), Expect = 1.142e-81 Identity = 120/168 (71.43%), Postives = 138/168 (82.14%), Query Frame = 0
Query: 51 DKAKGAESGKVVHLVSQEGDQYEVEVSVCKMSELVKTMLPDDDDSSETQEIPLPNVKNNVLAKVIEFCKHHKEDPMNDIEKPLKSANMHEVVQDWYANFVNVDQELLFELILAANYMDIKPLLDLTCATVASMIKGKTPEEIRRTFNITNDFTPEEEAQVREENKWCE 218
D K E + V+LVS +GD +EV SV MSELVKT++ DD D E QEIPLPNVK+ VL+KVIEFC HH +PM +IEKPLKSA+MH+VV DW ANFV+++QE+LFELILAANYMDIK LLDL CA VASMIKGKTP+EIR TFNI NDFTPEEEAQ+REENKWCE
Sbjct: 9 DTPKQEEDSRKVNLVSMDGDSFEVSRSVAAMSELVKTLISDDADDDEVQEIPLPNVKSPVLSKVIEFCSHHNNNPMREIEKPLKSADMHDVVSDWDANFVDIEQEILFELILAANYMDIKSLLDLACAKVASMIKGKTPQEIRDTFNIVNDFTPEEEAQIREENKWCE 176
BLAST of EWM25403.1 vs. NCBI_GenBank
Match: gi|695414206|ref|XP_009526241.1| (hypothetical protein PHYSODRAFT_354552 [Phytophthora sojae] >gi|348677366|gb|EGZ17183.1| hypothetical protein PHYSODRAFT_354552 [Phytophthora sojae]) HSP 1 Score: 252.292 bits (643), Expect = 5.931e-81 Identity = 118/162 (72.84%), Postives = 135/162 (83.33%), Query Frame = 0
Query: 57 ESGKVVHLVSQEGDQYEVEVSVCKMSELVKTMLPDDDDSSETQEIPLPNVKNNVLAKVIEFCKHHKEDPMNDIEKPLKSANMHEVVQDWYANFVNVDQELLFELILAANYMDIKPLLDLTCATVASMIKGKTPEEIRRTFNITNDFTPEEEAQVREENKWCE 218
E + V+LVS +GD +EV SV MSELVKT++ DD D E QEIPLPNVK+ VL+KVIEFC HH PM +IEKPLKSA+MH+VV DW ANFV+++QE+LFELILAANYMDIK LLDL CA VASMIKGKTP+EIR TFNI NDFTPEEEAQ+REENKWCE
Sbjct: 16 EDSRKVNLVSMDGDSFEVSRSVAAMSELVKTLISDDADDDEVQEIPLPNVKSPVLSKVIEFCSHHHNSPMREIEKPLKSADMHDVVSDWDANFVDIEQEILFELILAANYMDIKSLLDLACAKVASMIKGKTPQEIRETFNIVNDFTPEEEAQIREENKWCE 177
BLAST of EWM25403.1 vs. NCBI_GenBank
Match: gi|301120412|ref|XP_002907933.1| (S-phase kinase-associated protein 1A [Phytophthora infestans T30-4] >gi|262102964|gb|EEY61016.1| S-phase kinase-associated protein 1A [Phytophthora infestans T30-4]) HSP 1 Score: 251.906 bits (642), Expect = 9.581e-81 Identity = 119/175 (68.00%), Postives = 138/175 (78.86%), Query Frame = 0
Query: 44 DFRGSMGDKAKGAESGKVVHLVSQEGDQYEVEVSVCKMSELVKTMLPDDDDSSETQEIPLPNVKNNVLAKVIEFCKHHKEDPMNDIEKPLKSANMHEVVQDWYANFVNVDQELLFELILAANYMDIKPLLDLTCATVASMIKGKTPEEIRRTFNITNDFTPEEEAQVREENKWCE 218
D D + E + V+LVS +GD +EV V MSELVKT++ DD D E QEIPLPNVK+ VL+KVIEFC HH +PM +IEKPLKSA+MH+VV DW ANFV+++QE+LFELILAANYMDIK LLDL CA VASMIKGKTP+EIR TFNI NDFTPEEEAQ+REENKWCE
Sbjct: 3 DAAAPAQDTPRQEEDSRKVNLVSMDGDSFEVSRGVAAMSELVKTLISDDADDDEVQEIPLPNVKSPVLSKVIEFCSHHHNNPMREIEKPLKSADMHDVVSDWDANFVDIEQEILFELILAANYMDIKSLLDLACAKVASMIKGKTPQEIRETFNIVNDFTPEEEAQIREENKWCE 177
BLAST of EWM25403.1 vs. NCBI_GenBank
Match: gi|1214708029|gb|OWZ19356.1| (S-phase kinase-associated protein 1A [Phytophthora megakarya]) HSP 1 Score: 251.521 bits (641), Expect = 1.450e-80 Identity = 120/175 (68.57%), Postives = 138/175 (78.86%), Query Frame = 0
Query: 44 DFRGSMGDKAKGAESGKVVHLVSQEGDQYEVEVSVCKMSELVKTMLPDDDDSSETQEIPLPNVKNNVLAKVIEFCKHHKEDPMNDIEKPLKSANMHEVVQDWYANFVNVDQELLFELILAANYMDIKPLLDLTCATVASMIKGKTPEEIRRTFNITNDFTPEEEAQVREENKWCE 218
D D K E + V+LVS +GD +EV SV MSELVKT++ DD D E QEIPLPNVK+ VL+KVIEFC HH + M +IEKPLKSA+MH+VV DW ANFV+++QE+LFELILAANYMDIK LLDL CA VASMIKGKTP+EIR TFNI NDFTPEEEAQ+REENKWCE
Sbjct: 3 DATAPTQDAPKQEEDTRKVNLVSMDGDSFEVSRSVAAMSELVKTLISDDADDDEVQEIPLPNVKSPVLSKVIEFCSHHHNNTMREIEKPLKSADMHDVVSDWDANFVDIEQEILFELILAANYMDIKSLLDLACAKVASMIKGKTPQEIRETFNIVNDFTPEEEAQIREENKWCE 177
BLAST of EWM25403.1 vs. NCBI_GenBank
Match: gi|566022353|gb|ETI45264.1| (hypothetical protein F443_10095 [Phytophthora parasitica P1569] >gi|567959653|gb|ETK85222.1| hypothetical protein L915_09886 [Phytophthora parasitica] >gi|567988368|gb|ETL38646.1| hypothetical protein L916_09795 [Phytophthora parasitica] >gi|568017593|gb|ETL91770.1| hypothetical protein L917_09713 [Phytophthora parasitica] >gi|568047992|gb|ETM45060.1| hypothetical protein L914_09762 [Phytophthora parasitica] >gi|570325955|gb|ETO73903.1| hypothetical protein F444_10192 [Phytophthora parasitica P1976] >gi|570949823|gb|ETP15080.1| hypothetical protein F441_10035 [Phytophthora parasitica CJ01A1] >gi|570983282|gb|ETP43140.1| hypothetical protein F442_10006 [Phytophthora parasitica P10297]) HSP 1 Score: 251.136 bits (640), Expect = 1.548e-80 Identity = 118/165 (71.52%), Postives = 136/165 (82.42%), Query Frame = 0
Query: 54 KGAESGKVVHLVSQEGDQYEVEVSVCKMSELVKTMLPDDDDSSETQEIPLPNVKNNVLAKVIEFCKHHKEDPMNDIEKPLKSANMHEVVQDWYANFVNVDQELLFELILAANYMDIKPLLDLTCATVASMIKGKTPEEIRRTFNITNDFTPEEEAQVREENKWCE 218
K E + V+LVS +GD +EV V MSELVKT++ DD D E QEIPLPNVK+ VL+KVIEFC HH +PM +IEKPLKSA+MH+VV DW ANFV+++QE+LFELILAANYMDIK LLDL CA VASMIKGKTP+EIR TFNI NDFTPEEEAQ+REENKWCE
Sbjct: 13 KQEEDSRKVNLVSMDGDSFEVSRGVAAMSELVKTLISDDADDDEVQEIPLPNVKSPVLSKVIEFCSHHHNNPMREIEKPLKSADMHDVVSDWDANFVDIEQEILFELILAANYMDIKSLLDLACAKVASMIKGKTPQEIRETFNIVNDFTPEEEAQIREENKWCE 177
BLAST of EWM25403.1 vs. NCBI_GenBank
Match: gi|635358685|emb|CCI50764.1| (unnamed protein product [Albugo candida]) HSP 1 Score: 249.98 bits (637), Expect = 5.205e-80 Identity = 119/172 (69.19%), Postives = 138/172 (80.23%), Query Frame = 0
Query: 47 GSMGDKAKGAESGKVVHLVSQEGDQYEVEVSVCKMSELVKTMLPDDDDSSETQEIPLPNVKNNVLAKVIEFCKHHKEDPMNDIEKPLKSANMHEVVQDWYANFVNVDQELLFELILAANYMDIKPLLDLTCATVASMIKGKTPEEIRRTFNITNDFTPEEEAQVREENKWCE 218
G + A E + V+LVS +GD +EV SV MSELVKT++ D D E QEIPLPNVK+ VL++VIEFC HH +PM DI+KPLKS++MHEVV DW ANFV+V+QELLFELILAANYMDIK LLDL CA VASMIKGKTP+EIR TFNI NDFTPEEE+Q+REENKWCE
Sbjct: 9 GMQPETAALQEDSRKVNLVSMDGDSFEVSQSVACMSELVKTLIADGTDDQEIQEIPLPNVKSTVLSRVIEFCSHHLSNPMEDIDKPLKSSDMHEVVSDWDANFVDVEQELLFELILAANYMDIKSLLDLACAKVASMIKGKTPQEIRETFNIVNDFTPEEESQIREENKWCE 180
BLAST of EWM25403.1 vs. NCBI_GenBank
Match: gi|970631943|gb|KUF78379.1| (E3 ubiquitin ligase complex SCF subunit scon-3 [Phytophthora nicotianae]) HSP 1 Score: 248.825 bits (634), Expect = 1.740e-79 Identity = 117/165 (70.91%), Postives = 135/165 (81.82%), Query Frame = 0
Query: 54 KGAESGKVVHLVSQEGDQYEVEVSVCKMSELVKTMLPDDDDSSETQEIPLPNVKNNVLAKVIEFCKHHKEDPMNDIEKPLKSANMHEVVQDWYANFVNVDQELLFELILAANYMDIKPLLDLTCATVASMIKGKTPEEIRRTFNITNDFTPEEEAQVREENKWCE 218
K E + V+LVS +G +EV V MSELVKT++ DD D E QEIPLPNVK+ VL+KVIEFC HH +PM +IEKPLKSA+MH+VV DW ANFV+++QE+LFELILAANYMDIK LLDL CA VASMIKGKTP+EIR TFNI NDFTPEEEAQ+REENKWCE
Sbjct: 13 KQEEDSRKVNLVSMDGXSFEVSRGVAAMSELVKTLISDDADDDEVQEIPLPNVKSPVLSKVIEFCSHHHNNPMREIEKPLKSADMHDVVSDWDANFVDIEQEILFELILAANYMDIKSLLDLACAKVASMIKGKTPQEIRETFNIVNDFTPEEEAQIREENKWCE 177 The following BLAST results are available for this feature:
BLAST of EWM25403.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|