EWM25403.1, cds5254 (CDS) Nannochloropsis gaditana

Overview
NameEWM25403.1
Unique Namecds5254
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002465.1:570294..570407 -
Alignment locationCM002465.1:570017..570176 -
Alignment locationCM002465.1:569691..569809 -
Alignment locationCM002465.1:569345..569609 -
Alignment locationCM002465.1:569104..569174 -
Alignment locationCM002465.1:568825..569055 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM25403.1
Productglycoprotein fp21
Orig transcript idgnl|cribi|Naga_100005g56.6697.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:570294..570407 -
CM002465.1supercontigCM002465.1:570017..570176 -
CM002465.1supercontigCM002465.1:569691..569809 -
CM002465.1supercontigCM002465.1:569345..569609 -
CM002465.1supercontigCM002465.1:569104..569174 -
CM002465.1supercontigCM002465.1:568825..569055 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016301kinase activity
Vocabulary: Biological Process
TermDefinition
GO:0009056catabolic process
GO:0019538protein metabolic process
GO:0006511ubiquitin-dependent protein catabolic process
Vocabulary: INTERPRO
TermDefinition
IPR011333BTB/POZ_fold
IPR016073Skp1_comp_POZ
IPR016072Skp1_comp_dimer
IPR001232SKP1-like
Homology
BLAST of EWM25403.1 vs. NCBI_GenBank
Match: gi|585107164|gb|EWM25403.1| (glycoprotein fp21 [Nannochloropsis gaditana])

HSP 1 Score: 665.996 bits (1717), Expect = 0.000e+0
Identity = 319/319 (100.00%), Postives = 319/319 (100.00%), Query Frame = 0
Query:    1 MKDDHVLECAYQSDQPRRRLLAGTESQQCFQSCRLESIRKPFLDFRGSMGDKAKGAESGKVVHLVSQEGDQYEVEVSVCKMSELVKTMLPDDDDSSETQEIPLPNVKNNVLAKVIEFCKHHKEDPMNDIEKPLKSANMHEVVQDWYANFVNVDQELLFELILAANYMDIKPLLDLTCATVASMIKGKTPEEIRRTFNITNDFTPEEEAQVREENKWCEVRGVKATAMARTRTSGVLYFVQSVKPPNKEGLLCTESIVCPSRTTDKFCRRVCVLIDAGEPGQRERNVGRESRIQARGKGNERTKSFTTVTAVLSVETYSS 319
            MKDDHVLECAYQSDQPRRRLLAGTESQQCFQSCRLESIRKPFLDFRGSMGDKAKGAESGKVVHLVSQEGDQYEVEVSVCKMSELVKTMLPDDDDSSETQEIPLPNVKNNVLAKVIEFCKHHKEDPMNDIEKPLKSANMHEVVQDWYANFVNVDQELLFELILAANYMDIKPLLDLTCATVASMIKGKTPEEIRRTFNITNDFTPEEEAQVREENKWCEVRGVKATAMARTRTSGVLYFVQSVKPPNKEGLLCTESIVCPSRTTDKFCRRVCVLIDAGEPGQRERNVGRESRIQARGKGNERTKSFTTVTAVLSVETYSS
Sbjct:    1 MKDDHVLECAYQSDQPRRRLLAGTESQQCFQSCRLESIRKPFLDFRGSMGDKAKGAESGKVVHLVSQEGDQYEVEVSVCKMSELVKTMLPDDDDSSETQEIPLPNVKNNVLAKVIEFCKHHKEDPMNDIEKPLKSANMHEVVQDWYANFVNVDQELLFELILAANYMDIKPLLDLTCATVASMIKGKTPEEIRRTFNITNDFTPEEEAQVREENKWCEVRGVKATAMARTRTSGVLYFVQSVKPPNKEGLLCTESIVCPSRTTDKFCRRVCVLIDAGEPGQRERNVGRESRIQARGKGNERTKSFTTVTAVLSVETYSS 319          
BLAST of EWM25403.1 vs. NCBI_GenBank
Match: gi|298712647|emb|CBJ48672.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 267.7 bits (683), Expect = 5.692e-87
Identity = 127/167 (76.05%), Postives = 145/167 (86.83%), Query Frame = 0
Query:   53 AKGAESGKVVHLVSQEGDQYEVEVSVCKMSELVKTMLPDD-DDSSETQEIPLPNVKNNVLAKVIEFCKHHKEDPMNDIEKPLKSANMHEVVQDWYANFVNVDQELLFELILAANYMDIKPLLDLTCATVASMIKGKTPEEIRRTFNITNDFTPEEEAQVREENKWCE 218
            A   E  + VHLVSQEG+ ++++VSV KMS LVKTM+ +D ++  + QEIPLPNVK +VL+KVIEFC H+KEDPMN+IEKPLKSANMH+VVQ+WYA FV V QE LFELILAANYMDIKPLLDLTCATVASMIKGKT EEIR+TFNI NDFTPEEEAQVREENKWCE
Sbjct:   15 ADETEDTRSVHLVSQEGESFDIKVSVAKMSNLVKTMIDEDAEEDGDAQEIPLPNVKASVLSKVIEFCAHYKEDPMNEIEKPLKSANMHDVVQEWYAKFVEVQQETLFELILAANYMDIKPLLDLTCATVASMIKGKTAEEIRKTFNIVNDFTPEEEAQVREENKWCE 181          
BLAST of EWM25403.1 vs. NCBI_GenBank
Match: gi|676379847|ref|XP_009033202.1| (hypothetical protein AURANDRAFT_58667 [Aureococcus anophagefferens] >gi|323456247|gb|EGB12114.1| hypothetical protein AURANDRAFT_58667 [Aureococcus anophagefferens])

HSP 1 Score: 261.536 bits (667), Expect = 6.923e-85
Identity = 127/155 (81.94%), Postives = 144/155 (92.90%), Query Frame = 0
Query:   65 VSQEGDQYEVEVSVCKMSELVKTMLPDDDDSSETQE-IPLPNVKNNVLAKVIEFCKHHKEDPMNDIEKPLKSANMHEVVQDWYANFVNVDQELLFELILAANYMDIKPLLDLTCATVASMIKGKTPEEIRRTFNITNDFTPEEEAQVREENKWCE 218
            +SQEGDQ+EVEV V KMSELVKTM+P++ D  E  + IPLPNVK++VLAKVIEFC+ + E+PM++IEKPLKSANMHEVVQ+WYAN+V+VDQELLFELILAANYMDIKPLLDLTCATVASMIKGKTPEEIR+TFNI NDFTPEEEAQVREENKWCE
Sbjct:    1 MSQEGDQFEVEVKVAKMSELVKTMIPEEADEEEEAQEIPLPNVKSHVLAKVIEFCRRYAEEPMSEIEKPLKSANMHEVVQEWYANYVDVDQELLFELILAANYMDIKPLLDLTCATVASMIKGKTPEEIRKTFNIVNDFTPEEEAQVREENKWCE 155          
BLAST of EWM25403.1 vs. NCBI_GenBank
Match: gi|953498863|emb|CEG39913.1| (glycoprotein fp21 [Plasmopara halstedii])

HSP 1 Score: 254.218 bits (648), Expect = 1.142e-81
Identity = 120/168 (71.43%), Postives = 138/168 (82.14%), Query Frame = 0
Query:   51 DKAKGAESGKVVHLVSQEGDQYEVEVSVCKMSELVKTMLPDDDDSSETQEIPLPNVKNNVLAKVIEFCKHHKEDPMNDIEKPLKSANMHEVVQDWYANFVNVDQELLFELILAANYMDIKPLLDLTCATVASMIKGKTPEEIRRTFNITNDFTPEEEAQVREENKWCE 218
            D  K  E  + V+LVS +GD +EV  SV  MSELVKT++ DD D  E QEIPLPNVK+ VL+KVIEFC HH  +PM +IEKPLKSA+MH+VV DW ANFV+++QE+LFELILAANYMDIK LLDL CA VASMIKGKTP+EIR TFNI NDFTPEEEAQ+REENKWCE
Sbjct:    9 DTPKQEEDSRKVNLVSMDGDSFEVSRSVAAMSELVKTLISDDADDDEVQEIPLPNVKSPVLSKVIEFCSHHNNNPMREIEKPLKSADMHDVVSDWDANFVDIEQEILFELILAANYMDIKSLLDLACAKVASMIKGKTPQEIRDTFNIVNDFTPEEEAQIREENKWCE 176          
BLAST of EWM25403.1 vs. NCBI_GenBank
Match: gi|695414206|ref|XP_009526241.1| (hypothetical protein PHYSODRAFT_354552 [Phytophthora sojae] >gi|348677366|gb|EGZ17183.1| hypothetical protein PHYSODRAFT_354552 [Phytophthora sojae])

HSP 1 Score: 252.292 bits (643), Expect = 5.931e-81
Identity = 118/162 (72.84%), Postives = 135/162 (83.33%), Query Frame = 0
Query:   57 ESGKVVHLVSQEGDQYEVEVSVCKMSELVKTMLPDDDDSSETQEIPLPNVKNNVLAKVIEFCKHHKEDPMNDIEKPLKSANMHEVVQDWYANFVNVDQELLFELILAANYMDIKPLLDLTCATVASMIKGKTPEEIRRTFNITNDFTPEEEAQVREENKWCE 218
            E  + V+LVS +GD +EV  SV  MSELVKT++ DD D  E QEIPLPNVK+ VL+KVIEFC HH   PM +IEKPLKSA+MH+VV DW ANFV+++QE+LFELILAANYMDIK LLDL CA VASMIKGKTP+EIR TFNI NDFTPEEEAQ+REENKWCE
Sbjct:   16 EDSRKVNLVSMDGDSFEVSRSVAAMSELVKTLISDDADDDEVQEIPLPNVKSPVLSKVIEFCSHHHNSPMREIEKPLKSADMHDVVSDWDANFVDIEQEILFELILAANYMDIKSLLDLACAKVASMIKGKTPQEIRETFNIVNDFTPEEEAQIREENKWCE 177          
BLAST of EWM25403.1 vs. NCBI_GenBank
Match: gi|301120412|ref|XP_002907933.1| (S-phase kinase-associated protein 1A [Phytophthora infestans T30-4] >gi|262102964|gb|EEY61016.1| S-phase kinase-associated protein 1A [Phytophthora infestans T30-4])

HSP 1 Score: 251.906 bits (642), Expect = 9.581e-81
Identity = 119/175 (68.00%), Postives = 138/175 (78.86%), Query Frame = 0
Query:   44 DFRGSMGDKAKGAESGKVVHLVSQEGDQYEVEVSVCKMSELVKTMLPDDDDSSETQEIPLPNVKNNVLAKVIEFCKHHKEDPMNDIEKPLKSANMHEVVQDWYANFVNVDQELLFELILAANYMDIKPLLDLTCATVASMIKGKTPEEIRRTFNITNDFTPEEEAQVREENKWCE 218
            D      D  +  E  + V+LVS +GD +EV   V  MSELVKT++ DD D  E QEIPLPNVK+ VL+KVIEFC HH  +PM +IEKPLKSA+MH+VV DW ANFV+++QE+LFELILAANYMDIK LLDL CA VASMIKGKTP+EIR TFNI NDFTPEEEAQ+REENKWCE
Sbjct:    3 DAAAPAQDTPRQEEDSRKVNLVSMDGDSFEVSRGVAAMSELVKTLISDDADDDEVQEIPLPNVKSPVLSKVIEFCSHHHNNPMREIEKPLKSADMHDVVSDWDANFVDIEQEILFELILAANYMDIKSLLDLACAKVASMIKGKTPQEIRETFNIVNDFTPEEEAQIREENKWCE 177          
BLAST of EWM25403.1 vs. NCBI_GenBank
Match: gi|1214708029|gb|OWZ19356.1| (S-phase kinase-associated protein 1A [Phytophthora megakarya])

HSP 1 Score: 251.521 bits (641), Expect = 1.450e-80
Identity = 120/175 (68.57%), Postives = 138/175 (78.86%), Query Frame = 0
Query:   44 DFRGSMGDKAKGAESGKVVHLVSQEGDQYEVEVSVCKMSELVKTMLPDDDDSSETQEIPLPNVKNNVLAKVIEFCKHHKEDPMNDIEKPLKSANMHEVVQDWYANFVNVDQELLFELILAANYMDIKPLLDLTCATVASMIKGKTPEEIRRTFNITNDFTPEEEAQVREENKWCE 218
            D      D  K  E  + V+LVS +GD +EV  SV  MSELVKT++ DD D  E QEIPLPNVK+ VL+KVIEFC HH  + M +IEKPLKSA+MH+VV DW ANFV+++QE+LFELILAANYMDIK LLDL CA VASMIKGKTP+EIR TFNI NDFTPEEEAQ+REENKWCE
Sbjct:    3 DATAPTQDAPKQEEDTRKVNLVSMDGDSFEVSRSVAAMSELVKTLISDDADDDEVQEIPLPNVKSPVLSKVIEFCSHHHNNTMREIEKPLKSADMHDVVSDWDANFVDIEQEILFELILAANYMDIKSLLDLACAKVASMIKGKTPQEIRETFNIVNDFTPEEEAQIREENKWCE 177          
BLAST of EWM25403.1 vs. NCBI_GenBank
Match: gi|566022353|gb|ETI45264.1| (hypothetical protein F443_10095 [Phytophthora parasitica P1569] >gi|567959653|gb|ETK85222.1| hypothetical protein L915_09886 [Phytophthora parasitica] >gi|567988368|gb|ETL38646.1| hypothetical protein L916_09795 [Phytophthora parasitica] >gi|568017593|gb|ETL91770.1| hypothetical protein L917_09713 [Phytophthora parasitica] >gi|568047992|gb|ETM45060.1| hypothetical protein L914_09762 [Phytophthora parasitica] >gi|570325955|gb|ETO73903.1| hypothetical protein F444_10192 [Phytophthora parasitica P1976] >gi|570949823|gb|ETP15080.1| hypothetical protein F441_10035 [Phytophthora parasitica CJ01A1] >gi|570983282|gb|ETP43140.1| hypothetical protein F442_10006 [Phytophthora parasitica P10297])

HSP 1 Score: 251.136 bits (640), Expect = 1.548e-80
Identity = 118/165 (71.52%), Postives = 136/165 (82.42%), Query Frame = 0
Query:   54 KGAESGKVVHLVSQEGDQYEVEVSVCKMSELVKTMLPDDDDSSETQEIPLPNVKNNVLAKVIEFCKHHKEDPMNDIEKPLKSANMHEVVQDWYANFVNVDQELLFELILAANYMDIKPLLDLTCATVASMIKGKTPEEIRRTFNITNDFTPEEEAQVREENKWCE 218
            K  E  + V+LVS +GD +EV   V  MSELVKT++ DD D  E QEIPLPNVK+ VL+KVIEFC HH  +PM +IEKPLKSA+MH+VV DW ANFV+++QE+LFELILAANYMDIK LLDL CA VASMIKGKTP+EIR TFNI NDFTPEEEAQ+REENKWCE
Sbjct:   13 KQEEDSRKVNLVSMDGDSFEVSRGVAAMSELVKTLISDDADDDEVQEIPLPNVKSPVLSKVIEFCSHHHNNPMREIEKPLKSADMHDVVSDWDANFVDIEQEILFELILAANYMDIKSLLDLACAKVASMIKGKTPQEIRETFNIVNDFTPEEEAQIREENKWCE 177          
BLAST of EWM25403.1 vs. NCBI_GenBank
Match: gi|635358685|emb|CCI50764.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 249.98 bits (637), Expect = 5.205e-80
Identity = 119/172 (69.19%), Postives = 138/172 (80.23%), Query Frame = 0
Query:   47 GSMGDKAKGAESGKVVHLVSQEGDQYEVEVSVCKMSELVKTMLPDDDDSSETQEIPLPNVKNNVLAKVIEFCKHHKEDPMNDIEKPLKSANMHEVVQDWYANFVNVDQELLFELILAANYMDIKPLLDLTCATVASMIKGKTPEEIRRTFNITNDFTPEEEAQVREENKWCE 218
            G   + A   E  + V+LVS +GD +EV  SV  MSELVKT++ D  D  E QEIPLPNVK+ VL++VIEFC HH  +PM DI+KPLKS++MHEVV DW ANFV+V+QELLFELILAANYMDIK LLDL CA VASMIKGKTP+EIR TFNI NDFTPEEE+Q+REENKWCE
Sbjct:    9 GMQPETAALQEDSRKVNLVSMDGDSFEVSQSVACMSELVKTLIADGTDDQEIQEIPLPNVKSTVLSRVIEFCSHHLSNPMEDIDKPLKSSDMHEVVSDWDANFVDVEQELLFELILAANYMDIKSLLDLACAKVASMIKGKTPQEIRETFNIVNDFTPEEESQIREENKWCE 180          
BLAST of EWM25403.1 vs. NCBI_GenBank
Match: gi|970631943|gb|KUF78379.1| (E3 ubiquitin ligase complex SCF subunit scon-3 [Phytophthora nicotianae])

HSP 1 Score: 248.825 bits (634), Expect = 1.740e-79
Identity = 117/165 (70.91%), Postives = 135/165 (81.82%), Query Frame = 0
Query:   54 KGAESGKVVHLVSQEGDQYEVEVSVCKMSELVKTMLPDDDDSSETQEIPLPNVKNNVLAKVIEFCKHHKEDPMNDIEKPLKSANMHEVVQDWYANFVNVDQELLFELILAANYMDIKPLLDLTCATVASMIKGKTPEEIRRTFNITNDFTPEEEAQVREENKWCE 218
            K  E  + V+LVS +G  +EV   V  MSELVKT++ DD D  E QEIPLPNVK+ VL+KVIEFC HH  +PM +IEKPLKSA+MH+VV DW ANFV+++QE+LFELILAANYMDIK LLDL CA VASMIKGKTP+EIR TFNI NDFTPEEEAQ+REENKWCE
Sbjct:   13 KQEEDSRKVNLVSMDGXSFEVSRGVAAMSELVKTLISDDADDDEVQEIPLPNVKSPVLSKVIEFCSHHHNNPMREIEKPLKSADMHDVVSDWDANFVDIEQEILFELILAANYMDIKSLLDLACAKVASMIKGKTPQEIRETFNIVNDFTPEEEAQIREENKWCE 177          
The following BLAST results are available for this feature:
BLAST of EWM25403.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585107164|gb|EWM25403.1|0.000e+0100.00glycoprotein fp21 [Nannochloropsis gaditana][more]
gi|298712647|emb|CBJ48672.1|5.692e-8776.05conserved unknown protein [Ectocarpus siliculosus][more]
gi|676379847|ref|XP_009033202.1|6.923e-8581.94hypothetical protein AURANDRAFT_58667 [Aureococcus... [more]
gi|953498863|emb|CEG39913.1|1.142e-8171.43glycoprotein fp21 [Plasmopara halstedii][more]
gi|695414206|ref|XP_009526241.1|5.931e-8172.84hypothetical protein PHYSODRAFT_354552 [Phytophtho... [more]
gi|301120412|ref|XP_002907933.1|9.581e-8168.00S-phase kinase-associated protein 1A [Phytophthora... [more]
gi|1214708029|gb|OWZ19356.1|1.450e-8068.57S-phase kinase-associated protein 1A [Phytophthora... [more]
gi|566022353|gb|ETI45264.1|1.548e-8071.52hypothetical protein F443_10095 [Phytophthora para... [more]
gi|635358685|emb|CCI50764.1|5.205e-8069.19unnamed protein product [Albugo candida][more]
gi|970631943|gb|KUF78379.1|1.740e-7970.91E3 ubiquitin ligase complex SCF subunit scon-3 [Ph... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5267rna5267Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications