EWM25422.1, cds5249 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM25422.1 vs. NCBI_GenBank
Match: gi|585107183|gb|EWM25422.1| (Photosystem II PsbP, oxygen evolving complex [Nannochloropsis gaditana]) HSP 1 Score: 544.658 bits (1402), Expect = 0.000e+0 Identity = 265/265 (100.00%), Postives = 265/265 (100.00%), Query Frame = 0
Query: 1 MYAGLSTMPLHSRLCWSLVTMLALGILATFPTHSKAYTLANLSRLPAHKKCGAFFPRRPLVDRDLSRSQVLSGGISAISGSFLVCLGASFLQIKPVIAADEGSGDKGSPTFVTCASSSGIFRFLYPETWTSAPKLLQTHQEEVTLKSKNVLGFSAGVAVDPVRIESIQQSGSPSEVGARIVALEGKKEGVSKVELLGSAQEGDFYTFDYEVESTRGRNRFLARAIVADKKLIVFTIQIPMDAYEANEATISRMLQSLQVNETNGK 265
MYAGLSTMPLHSRLCWSLVTMLALGILATFPTHSKAYTLANLSRLPAHKKCGAFFPRRPLVDRDLSRSQVLSGGISAISGSFLVCLGASFLQIKPVIAADEGSGDKGSPTFVTCASSSGIFRFLYPETWTSAPKLLQTHQEEVTLKSKNVLGFSAGVAVDPVRIESIQQSGSPSEVGARIVALEGKKEGVSKVELLGSAQEGDFYTFDYEVESTRGRNRFLARAIVADKKLIVFTIQIPMDAYEANEATISRMLQSLQVNETNGK
Sbjct: 1 MYAGLSTMPLHSRLCWSLVTMLALGILATFPTHSKAYTLANLSRLPAHKKCGAFFPRRPLVDRDLSRSQVLSGGISAISGSFLVCLGASFLQIKPVIAADEGSGDKGSPTFVTCASSSGIFRFLYPETWTSAPKLLQTHQEEVTLKSKNVLGFSAGVAVDPVRIESIQQSGSPSEVGARIVALEGKKEGVSKVELLGSAQEGDFYTFDYEVESTRGRNRFLARAIVADKKLIVFTIQIPMDAYEANEATISRMLQSLQVNETNGK 265
BLAST of EWM25422.1 vs. NCBI_GenBank
Match: gi|298707646|emb|CBJ25963.1| (Similar to photosystem II oxygen evolving complex protein PsbP in Synechococcus [Ectocarpus siliculosus]) HSP 1 Score: 111.309 bits (277), Expect = 1.329e-25 Identity = 63/149 (42.28%), Postives = 87/149 (58.39%), Query Frame = 0
Query: 115 ASSSGIFRFLYPETWTSAPKLLQTHQEEVTLKSKNVLGFSAGVAVDPVRIESIQQSGSPSEVGARIVALEGKKEGVSKVELLGSAQE--GD--FYTFDYEVESTRGRNRFLARAIVADKKLIVFTIQIPMDAYEANEATISRMLQSLQV 259
AS G F YP + K L+TH+ EV KS+ V G+ GVA+DPVRIES++ G+P EVGAR++ +E K+G +LL ++ E GD YT DY VESTRG F+A+ + D L T Q Y EA + R+++S +V
Sbjct: 125 ASPDGSFALRYPVGFKGFSKPLKTHKVEVNFKSEEVKGYEVGVAIDPVRIESLETFGTPEEVGARVLKVEQAKDGTLDTKLLDTSAEKQGDLSLYTLDYFVESTRGFKHFVAKVTIKDNLLYACTAQAKEKDYPQVEAELKRVVESFRV 273
BLAST of EWM25422.1 vs. NCBI_GenBank
Match: gi|1210515766|dbj|GAX25289.1| (hypothetical protein FisN_5Lh372 [Fistulifera solaris]) HSP 1 Score: 88.5817 bits (218), Expect = 1.468e-17 Identity = 52/157 (33.12%), Postives = 81/157 (51.59%), Query Frame = 0
Query: 115 ASSSGIFR-----FLY----PETWTSAPKLLQTHQEEVTLKSKNVLGFSAGVAVDPVRIESIQQSGSPSEVGARIVALEGKKEGVSKVELLGSAQEGD---FYTFDYEVESTRGRNRFLARAIVADKKLIVFTIQIPMDAYEANEATISRMLQSLQV 259
ASS +FR F Y P W K L+TH +EV KS ++ + G+ VDPVRI+S+ + G+P+EV A++V E ++GV V L A D +Y +Y + RG RF+ + V D+ L T Q Y ++ I++ + S ++
Sbjct: 65 ASSETVFRRQTDRFSYVFEPPTDWAPQNKPLKTHLDEVNFKSPSISKYEYGITVDPVRIKSLHEFGTPAEVAAKVVLSELNRDGVFDVTLAEDAFAADNDAYYQLNYISKGKRGEKRFITKFYVRDQMLFALTAQCLDSDYRKLQSEITKTVDSFRI 221
BLAST of EWM25422.1 vs. NCBI_GenBank
Match: gi|873236748|emb|CEL98426.1| (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 85.8853 bits (211), Expect = 2.107e-17 Identity = 46/101 (45.54%), Postives = 65/101 (64.36%), Query Frame = 0
Query: 141 EEVTLKSKNVLGFSAGVAVDPVRIESIQQSGSPSEVGARIVALEGKKEGVSKVELLG--SAQEGD--FYTFDYEVESTRGRNRFLARAIVADKKLIVFTIQ 237
EE+ KS + G++ GVAVDPV+I+S+ G+P VG RIV +E KK+GV V+LL S + G FY +Y ++TRG N F+ R IV +++L FT Q
Sbjct: 5 EEINYKSPEIKGYTVGVAVDPVKIDSLAAFGTPDFVGQRIVDVEKKKDGVIDVQLLKAESLESGGQVFYEVEYTSDTTRGFNHFITRVIVVNQRLFAFTAQ 105
BLAST of EWM25422.1 vs. NCBI_GenBank
Match: gi|1210524264|dbj|GAX16993.1| (hypothetical protein FisN_5Hh372 [Fistulifera solaris]) HSP 1 Score: 87.4261 bits (215), Expect = 4.320e-17 Identity = 52/157 (33.12%), Postives = 80/157 (50.96%), Query Frame = 0
Query: 115 ASSSGIF-----RFLY----PETWTSAPKLLQTHQEEVTLKSKNVLGFSAGVAVDPVRIESIQQSGSPSEVGARIVALEGKKEGVSKVELLGSAQEGD---FYTFDYEVESTRGRNRFLARAIVADKKLIVFTIQIPMDAYEANEATISRMLQSLQV 259
ASS +F RF Y P W K L+TH +EV KS ++ + G+ VDPVRI+S+++ G+P+EV A++V E ++GV V L A D +Y +Y + RG RF+ + V D+ L T Q Y I++ + S ++
Sbjct: 69 ASSETVFKRQTDRFSYLFEPPTDWAPQNKPLKTHLDEVNFKSPSISKYEYGITVDPVRIKSLREFGTPAEVAAKVVLSELNRDGVFDVTLAEDAFAADNDAYYQLNYTSKGKRGEKRFITKFYVRDQMLFALTAQCLDSDYGKLRNEITKTVDSFRI 225
BLAST of EWM25422.1 vs. NCBI_GenBank
Match: gi|223995381|ref|XP_002287374.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220976490|gb|EED94817.1| predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 88.1965 bits (217), Expect = 4.783e-17 Identity = 55/165 (33.33%), Postives = 87/165 (52.73%), Query Frame = 0
Query: 88 ASFLQIK---PVIAADEGSGDKGSPTFVTCASSSGIFRFLY--PETWTSAPKLLQTHQEEVTLKSKNVLGFSAGVAVDPVRIESIQQSGSPSEVGARIVALEGKKEGVSKVELLGSAQEGD--FYTFDYEVESTRGRNRFLARAIVADKKLIVFTIQIPMDAYEA 245
ASFL I P A + + D + + + FR+ P ++T++ K L+TH +E+ +V G++ G+ VDPVRI++IQ+ G+P EV AR+V E ++GV +V L +E Y +Y + RG RF+ R V D L V T+Q Y++
Sbjct: 82 ASFLMIPSTLPAFADETATADTQQQSAYSSPPNQK-FRYTVTPPPSFTASNKPLKTHLDEINFSPPDVRGYTLGITVDPVRIKTIQEFGTPEEVAARVVTAEVNRDGVFRVTLAKDPKEDTEGCYDVEYISDGKRGTKRFVTRIYVKDGFLYVLTLQSKEAEYDS 245
BLAST of EWM25422.1 vs. NCBI_GenBank
Match: gi|397587573|gb|EJK53960.1| (hypothetical protein THAOC_26500 [Thalassiosira oceanica]) HSP 1 Score: 87.8113 bits (216), Expect = 7.243e-17 Identity = 60/179 (33.52%), Postives = 92/179 (51.40%), Query Frame = 0
Query: 88 ASFLQIKPVIAADEGSGDKGSPTFVTCASSSGIFRFLY----PETWTSAPKLLQTHQEEVTLKSKNVLGFSAGVAVDPVRIESIQQSGSPSEVGARIVALEGKKEGVSKVELLGSAQEG---DFYTFDYEVESTRGRNRFLARAIVADKKLIVFTIQIPMDAYE-ANEATISRMLQSLQ 258
AS + + P +A G + +V G F+F Y P ++TS+ K L+TH +E+ S +V G+ GV VDPVRI+SI++ G P +V AR+V E ++GV V+L+ A E Y +Y + RG RF+ R V + L V T Q Y+ A E + ++S +
Sbjct: 99 ASLVLLSPSLACASGDDYGAAQPYVK--KGDGKFQFAYTVTPPASFTSSNKPLKTHLDEINF-SGDVRGYQVGVTVDPVRIKSIKEFGDPEQVAARVVTAEVNRDGVFDVKLVKDAAEDAQLGCYDVEYISDGKRGTKRFVTRIYVKEGFLYVLTFQSKEAEYDGAREQEVLNTVKSFK 274
BLAST of EWM25422.1 vs. NCBI_GenBank
Match: gi|1189391867|gb|OSX78790.1| (hypothetical protein BU14_0098s0016 [Porphyra umbilicalis]) HSP 1 Score: 87.0409 bits (214), Expect = 5.901e-16 Identity = 54/162 (33.33%), Postives = 83/162 (51.23%), Query Frame = 0
Query: 121 FRFLYPETWTSAPKLLQTHQEEVTLKSKNVLGFSAGVAVD-PVRIESIQQSGSPSEVGARIVALEGKKEGVSKVELLGSAQE----------------------GDFYTFDYEVESTRGRNRFLARAIVADKKLIVFTIQIPMDAYEANEATISRMLQSLQV 259
+ F YP TW++ K ++TH EV + + S G+ VD P++I SI++ G+P VGA+++ALE KK+ V L+ +A E G Y +Y V+S+RG F+A+A VA +L V T D +EA + +L SL+V
Sbjct: 234 YSFRYPTTWSANKKPIKTHLSEVIVSAPKGSSASVGLVVDGPLKIGSIEEFGTPDAVGAKVLALERKKDSTKDVRLVRTASETLGVGGGAAAAAGVGQPAGLGNGVAYIVEYVVDSSRGVKHFVAKATVAAGQLYVMTATCKEDEFEAARGGLETVLASLRV 395
BLAST of EWM25422.1 vs. NCBI_GenBank
Match: gi|1072232520|gb|OEU17251.1| (hypothetical protein FRACYDRAFT_151807, partial [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 79.337 bits (194), Expect = 8.226e-15 Identity = 46/144 (31.94%), Postives = 74/144 (51.39%), Query Frame = 0
Query: 121 FRFLYPETWTSAPKLLQTHQEEVTLKSKNVLGFSAGVAVDPVRIESIQQSGSPSEVGARIVALEGKKEGVSKVELLGSAQE-----GDFYTFDYEVESTRGRNRFLARAIVADKKLI-VFTIQIPMDAYEANEATISRMLQSLQ 258
++ P + + K ++TH +EV S++ G+ G+ VDPVRI SI++ G+P EV AR+V E ++GV V LL + D Y Y RGR + + ++ +L+ V T Q D + A E I + ++S Q
Sbjct: 6 YQIAIPSSMKESSKPIKTHLDEVNFMSESTRGYQYGITVDPVRITSIKEFGTPEEVAARVVTAEVNRDGVFDVTLLEDPYQINNGVVDAYVLKYLSVGKRGRKVYTNKIFISPSQLLYVLTAQCKEDDFPAQEKDIKKTIESFQ 149
BLAST of EWM25422.1 vs. NCBI_GenBank
Match: gi|922858673|gb|KOO26778.1| (hypothetical protein Ctob_008093 [Chrysochromulina sp. CCMP291]) HSP 1 Score: 79.7221 bits (195), Expect = 3.185e-14 Identity = 44/136 (32.35%), Postives = 75/136 (55.15%), Query Frame = 0
Query: 121 FRFLYPETWTSAPKLLQTHQEEVTLKSKNVLGFSAGVAVDPVRIESIQQSGSPSEVGARIVALEGKKEGVSKVELLGSA--------QEGDFYTFDYEVESTRGRNRFLARAIVADKKLIVFTIQIPMDAYEANEA 248
+R YP W +A K ++TH E L S G GV VDPV I+S++ G+ +V R++A+E ++GV+ V L +A + +YT +Y +S+RG+ F + +A ++L V +Q +D ++ +EA
Sbjct: 82 YRLEYPADWKAAGKPVKTHLHEALLSSPG--GLKLGVTVDPVVIDSLEAFGTLDQVTERVLAVETTRDGVNSVILRTNAAQAADAARRTPSYYTIEYATDSSRGKKLFSCKYCIAGRRLYVLQLQAKLDDFDGDEA 215 The following BLAST results are available for this feature:
BLAST of EWM25422.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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