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Properties
| Property Name | Value |
|---|
| Product | Photosystem II PsbP, oxygen evolving complex |
| Orig transcript id | gnl|cribi|Naga_100005g50.6716.mrna |
| Orig protein id | gnl|cribi|Naga_100005g50.6716 |
| Gene | psbP |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002465.1 | supercontig | CM002465.1:559057..560054 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna5262 ID=rna5262|Name=rna5262|organism=Nannochloropsis gaditana|type=mRNA|length=465bp
ATGACACGTCCCTCGCGGCGCAGTGCTTCTTTGAACAGGCTCCCGTTTAC
GAAGGCGAGCGTTGGCTATATAAATTGCAATTTTTCCATGGCTTTAGGCG
TAGTAACAGCGCTCAAAGCCCGATTGCTGGCGGTAGGGTTTATTAAAAAC
AATCCGCGGGTCAAGGCTGTGCTCGATCACCCTGCTGGACCGTTCACTAT
CCACTTTTGGGCACCTTCTTTCAAGTGGGGAATCTCATTGGCAAATATCG
CTGACTTTAATCGACCAGCAGAGCTGATTTCTGTGCCTCAACAACTCGCG
GTGACAGCCACGGGCATCATCTGGTCGCGCTACAGCTTCGTTATCACACC
AGTGAATTACAACCTTTTCAGCGTCAACGCATTCATGGCTGTCACGGGAA
GTTACCAGCTGTGGCGAAAATTTACTGCTACACCTAACTCTATGTCTGTT
GCTTCGTCATCATGA back to topprotein sequence of rna5262 >rna5262-protein ID=rna5262-protein|Name=rna5262|organism=Nannochloropsis gaditana|type=polypeptide|length=265bp
MYAGLSTMPLHSRLCWSLVTMLALGILATFPTHSKAYTLANLSRLPAHKK
CGAFFPRRPLVDRDLSRSQVLSGGISAISGSFLVCLGASFLQIKPVIAAD
EGSGDKGSPTFVTCASSSGIFRFLYPETWTSAPKLLQTHQEEVTLKSKNV
LGFSAGVAVDPVRIESIQQSGSPSEVGARIVALEGKKEGVSKVELLGSAQ
EGDFYTFDYEVESTRGRNRFLARAIVADKKLIVFTIQIPMDAYEANEATI
SRMLQSLQVNETNGK back to topmRNA from alignment at CM002465.1:559057..560054- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna5262 ID=rna5262|Name=rna5262|organism=Nannochloropsis gaditana|type=mRNA|length=998bp|location=Sequence derived from alignment at CM002465.1:559057..560054- (Nannochloropsis gaditana)
ATGTACGCGGGATTGTCAACCATGCCACTGCATTCAAGACTATGCTGGAG
TCTCGTCACAATGCTGGCCCTGGGTATACTAGCAACTTTTCCCACCCATT
CAAAAGCTTACACACTTGCCAATCTCAGTCGACTGCCAGCTCACAAGAAG
TGTGGAGCCTTTTTTCCCCGGCGACCTCTCGTGGACAGGGATCTCAGTCG
GTCTCAAGTGCTCTCAGGAGGTATTTCGGCCATATCAGGATCTTTCTTGG
TATGTTTGGGTGCTTCTTTTCTTCAAATTAAGCCTGTGATCGCTGCCGAT
GAAGGGAGTGGAGACAAGGGCTCTCCCACGTTCGTCACCTGCGCCTCTTC
GAGCGGGATCTTTCGATTTTTGTACCCAGAGACCTGGACATCTGCGCCTA
AACTTCTTCAGACGCATCAAGAGGAGGTGAGACTGTCCTAAAATATTCGA
GAACAGAGACGGCAAATGTTTCTACTTTACACTGACTTTCAACTTCTCTC
ACAGGTAACTCTAAAAAGCAAAAATGTCCTTGGATTTTCTGCTGGCGTTG
CGGTAAGCGATATAGCCTGCATTTATGGACATATAGGGCCTTAGAGAGAT
CCTTGAGACGGACGAGCGACGAAGTGAATGAAAGCACACGGCACCGGTTC
TTCTCCGCACGCATCACATTACAGGTTGATCCGGTCCGCATCGAGAGCAT
CCAACAAAGCGGCAGCCCCAGTGAAGTTGGAGCTCGCATTGTCGCCTTGG
AAGGCAAAAAGGAAGGGGTTTCTAAGGTGGAGCTGTTGGGCAGCGCCCAA
GAAGGAGACTTTTACACCTTTGATTATGAGGTAGAGTCTACGCGGGGACG
CAACCGATTCCTTGCCAGGGCTATAGTTGCTGACAAGAAGCTGATAGTTT
TTACGATTCAGATTCCAATGGATGCTTACGAGGCCAATGAGGCGACCATT
TCGCGGATGCTCCAATCACTGCAGGTCAACGAGACGAACGGGAAATGA back to topCoding sequence (CDS) from alignment at CM002465.1:559057..560054- >rna5262 ID=rna5262|Name=rna5262|organism=Nannochloropsis gaditana|type=CDS|length=2394bp|location=Sequence derived from alignment at CM002465.1:559057..560054- (Nannochloropsis gaditana)
GTTGATCCGGTCCGCATCGAGAGCATCCAACAAAGCGGCAGCCCCAGTGA
AGTTGGAGCTCGCATTGTCGCCTTGGAAGGCAAAAAGGAAGGGGTTTCTA
AGGTGGAGCTGTTGGGCAGCGCCCAAGAAGGAGACTTTTACACCTTTGAT
TATGAGGTAGAGTCTACGCGGGGACGCAACCGATTCCTTGCCAGGGCTAT
AGTTGCTGACAAGAAGCTGATAGTTTTTACGATTCAGATTCCAATGGATG
CTTACGAGGCCAATGAGGCGACCATTTCGCGGATGCTCCAATCACTGCAG
GTCAACGAGACGAACGGGAAATGAGTAACTCTAAAAAGCAAAAATGTCCT
TGGATTTTCTGCTGGCGTTGCGATGTACGCGGGATTGTCAACCATGCCAC
TGCATTCAAGACTATGCTGGAGTCTCGTCACAATGCTGGCCCTGGGTATA
CTAGCAACTTTTCCCACCCATTCAAAAGCTTACACACTTGCCAATCTCAG
TCGACTGCCAGCTCACAAGAAGTGTGGAGCCTTTTTTCCCCGGCGACCTC
TCGTGGACAGGGATCTCAGTCGGTCTCAAGTGCTCTCAGGAGGTATTTCG
GCCATATCAGGATCTTTCTTGGTATGTTTGGGTGCTTCTTTTCTTCAAAT
TAAGCCTGTGATCGCTGCCGATGAAGGGAGTGGAGACAAGGGCTCTCCCA
CGTTCGTCACCTGCGCCTCTTCGAGCGGGATCTTTCGATTTTTGTACCCA
GAGACCTGGACATCTGCGCCTAAACTTCTTCAGACGCATCAAGAGGAGGT
TGATCCGGTCCGCATCGAGAGCATCCAACAAAGCGGCAGCCCCAGTGAAG
TTGGAGCTCGCATTGTCGCCTTGGAAGGCAAAAAGGAAGGGGTTTCTAAG
GTGGAGCTGTTGGGCAGCGCCCAAGAAGGAGACTTTTACACCTTTGATTA
TGAGGTAGAGTCTACGCGGGGACGCAACCGATTCCTTGCCAGGGCTATAG
TTGCTGACAAGAAGCTGATAGTTTTTACGATTCAGATTCCAATGGATGCT
TACGAGGCCAATGAGGCGACCATTTCGCGGATGCTCCAATCACTGCAGGT
CAACGAGACGAACGGGAAATGAGTAACTCTAAAAAGCAAAAATGTCCTTG
GATTTTCTGCTGGCGTTGCGATGTACGCGGGATTGTCAACCATGCCACTG
CATTCAAGACTATGCTGGAGTCTCGTCACAATGCTGGCCCTGGGTATACT
AGCAACTTTTCCCACCCATTCAAAAGCTTACACACTTGCCAATCTCAGTC
GACTGCCAGCTCACAAGAAGTGTGGAGCCTTTTTTCCCCGGCGACCTCTC
GTGGACAGGGATCTCAGTCGGTCTCAAGTGCTCTCAGGAGGTATTTCGGC
CATATCAGGATCTTTCTTGGTATGTTTGGGTGCTTCTTTTCTTCAAATTA
AGCCTGTGATCGCTGCCGATGAAGGGAGTGGAGACAAGGGCTCTCCCACG
TTCGTCACCTGCGCCTCTTCGAGCGGGATCTTTCGATTTTTGTACCCAGA
GACCTGGACATCTGCGCCTAAACTTCTTCAGACGCATCAAGAGGAGGTTG
ATCCGGTCCGCATCGAGAGCATCCAACAAAGCGGCAGCCCCAGTGAAGTT
GGAGCTCGCATTGTCGCCTTGGAAGGCAAAAAGGAAGGGGTTTCTAAGGT
GGAGCTGTTGGGCAGCGCCCAAGAAGGAGACTTTTACACCTTTGATTATG
AGGTAGAGTCTACGCGGGGACGCAACCGATTCCTTGCCAGGGCTATAGTT
GCTGACAAGAAGCTGATAGTTTTTACGATTCAGATTCCAATGGATGCTTA
CGAGGCCAATGAGGCGACCATTTCGCGGATGCTCCAATCACTGCAGGTCA
ACGAGACGAACGGGAAATGAGTAACTCTAAAAAGCAAAAATGTCCTTGGA
TTTTCTGCTGGCGTTGCGATGTACGCGGGATTGTCAACCATGCCACTGCA
TTCAAGACTATGCTGGAGTCTCGTCACAATGCTGGCCCTGGGTATACTAG
CAACTTTTCCCACCCATTCAAAAGCTTACACACTTGCCAATCTCAGTCGA
CTGCCAGCTCACAAGAAGTGTGGAGCCTTTTTTCCCCGGCGACCTCTCGT
GGACAGGGATCTCAGTCGGTCTCAAGTGCTCTCAGGAGGTATTTCGGCCA
TATCAGGATCTTTCTTGGTATGTTTGGGTGCTTCTTTTCTTCAAATTAAG
CCTGTGATCGCTGCCGATGAAGGGAGTGGAGACAAGGGCTCTCCCACGTT
CGTCACCTGCGCCTCTTCGAGCGGGATCTTTCGATTTTTGTACCCAGAGA
CCTGGACATCTGCGCCTAAACTTCTTCAGACGCATCAAGAGGAG back to top
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