EWM25422.1, cds5249 (CDS) Nannochloropsis gaditana

Overview
NameEWM25422.1
Unique Namecds5249
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002465.1:559629..560054 -
Alignment locationCM002465.1:559503..559550 -
Alignment locationCM002465.1:559057..559380 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM25422.1
ProductPhotosystem II PsbP, oxygen evolving complex
Orig transcript idgnl|cribi|Naga_100005g50.6716.mrna
GenepsbP
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:559629..560054 -
CM002465.1supercontigCM002465.1:559503..559550 -
CM002465.1supercontigCM002465.1:559057..559380 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0009579thylakoid
GO:0016020membrane
GO:0019898extrinsic component of membrane
GO:0009654photosystem II oxygen evolving complex
GO:0009523photosystem II
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0005509calcium ion binding
Vocabulary: Biological Process
TermDefinition
GO:0015979photosynthesis
Vocabulary: INTERPRO
TermDefinition
IPR016123Mog1/PsbP_a/b/a-sand
IPR002683PSII_PsbP
Homology
BLAST of EWM25422.1 vs. NCBI_GenBank
Match: gi|585107183|gb|EWM25422.1| (Photosystem II PsbP, oxygen evolving complex [Nannochloropsis gaditana])

HSP 1 Score: 544.658 bits (1402), Expect = 0.000e+0
Identity = 265/265 (100.00%), Postives = 265/265 (100.00%), Query Frame = 0
Query:    1 MYAGLSTMPLHSRLCWSLVTMLALGILATFPTHSKAYTLANLSRLPAHKKCGAFFPRRPLVDRDLSRSQVLSGGISAISGSFLVCLGASFLQIKPVIAADEGSGDKGSPTFVTCASSSGIFRFLYPETWTSAPKLLQTHQEEVTLKSKNVLGFSAGVAVDPVRIESIQQSGSPSEVGARIVALEGKKEGVSKVELLGSAQEGDFYTFDYEVESTRGRNRFLARAIVADKKLIVFTIQIPMDAYEANEATISRMLQSLQVNETNGK 265
            MYAGLSTMPLHSRLCWSLVTMLALGILATFPTHSKAYTLANLSRLPAHKKCGAFFPRRPLVDRDLSRSQVLSGGISAISGSFLVCLGASFLQIKPVIAADEGSGDKGSPTFVTCASSSGIFRFLYPETWTSAPKLLQTHQEEVTLKSKNVLGFSAGVAVDPVRIESIQQSGSPSEVGARIVALEGKKEGVSKVELLGSAQEGDFYTFDYEVESTRGRNRFLARAIVADKKLIVFTIQIPMDAYEANEATISRMLQSLQVNETNGK
Sbjct:    1 MYAGLSTMPLHSRLCWSLVTMLALGILATFPTHSKAYTLANLSRLPAHKKCGAFFPRRPLVDRDLSRSQVLSGGISAISGSFLVCLGASFLQIKPVIAADEGSGDKGSPTFVTCASSSGIFRFLYPETWTSAPKLLQTHQEEVTLKSKNVLGFSAGVAVDPVRIESIQQSGSPSEVGARIVALEGKKEGVSKVELLGSAQEGDFYTFDYEVESTRGRNRFLARAIVADKKLIVFTIQIPMDAYEANEATISRMLQSLQVNETNGK 265          
BLAST of EWM25422.1 vs. NCBI_GenBank
Match: gi|298707646|emb|CBJ25963.1| (Similar to photosystem II oxygen evolving complex protein PsbP in Synechococcus [Ectocarpus siliculosus])

HSP 1 Score: 111.309 bits (277), Expect = 1.329e-25
Identity = 63/149 (42.28%), Postives = 87/149 (58.39%), Query Frame = 0
Query:  115 ASSSGIFRFLYPETWTSAPKLLQTHQEEVTLKSKNVLGFSAGVAVDPVRIESIQQSGSPSEVGARIVALEGKKEGVSKVELLGSAQE--GD--FYTFDYEVESTRGRNRFLARAIVADKKLIVFTIQIPMDAYEANEATISRMLQSLQV 259
            AS  G F   YP  +    K L+TH+ EV  KS+ V G+  GVA+DPVRIES++  G+P EVGAR++ +E  K+G    +LL ++ E  GD   YT DY VESTRG   F+A+  + D  L   T Q     Y   EA + R+++S +V
Sbjct:  125 ASPDGSFALRYPVGFKGFSKPLKTHKVEVNFKSEEVKGYEVGVAIDPVRIESLETFGTPEEVGARVLKVEQAKDGTLDTKLLDTSAEKQGDLSLYTLDYFVESTRGFKHFVAKVTIKDNLLYACTAQAKEKDYPQVEAELKRVVESFRV 273          
BLAST of EWM25422.1 vs. NCBI_GenBank
Match: gi|1210515766|dbj|GAX25289.1| (hypothetical protein FisN_5Lh372 [Fistulifera solaris])

HSP 1 Score: 88.5817 bits (218), Expect = 1.468e-17
Identity = 52/157 (33.12%), Postives = 81/157 (51.59%), Query Frame = 0
Query:  115 ASSSGIFR-----FLY----PETWTSAPKLLQTHQEEVTLKSKNVLGFSAGVAVDPVRIESIQQSGSPSEVGARIVALEGKKEGVSKVELLGSAQEGD---FYTFDYEVESTRGRNRFLARAIVADKKLIVFTIQIPMDAYEANEATISRMLQSLQV 259
            ASS  +FR     F Y    P  W    K L+TH +EV  KS ++  +  G+ VDPVRI+S+ + G+P+EV A++V  E  ++GV  V L   A   D   +Y  +Y  +  RG  RF+ +  V D+ L   T Q     Y   ++ I++ + S ++
Sbjct:   65 ASSETVFRRQTDRFSYVFEPPTDWAPQNKPLKTHLDEVNFKSPSISKYEYGITVDPVRIKSLHEFGTPAEVAAKVVLSELNRDGVFDVTLAEDAFAADNDAYYQLNYISKGKRGEKRFITKFYVRDQMLFALTAQCLDSDYRKLQSEITKTVDSFRI 221          
BLAST of EWM25422.1 vs. NCBI_GenBank
Match: gi|873236748|emb|CEL98426.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 85.8853 bits (211), Expect = 2.107e-17
Identity = 46/101 (45.54%), Postives = 65/101 (64.36%), Query Frame = 0
Query:  141 EEVTLKSKNVLGFSAGVAVDPVRIESIQQSGSPSEVGARIVALEGKKEGVSKVELLG--SAQEGD--FYTFDYEVESTRGRNRFLARAIVADKKLIVFTIQ 237
            EE+  KS  + G++ GVAVDPV+I+S+   G+P  VG RIV +E KK+GV  V+LL   S + G   FY  +Y  ++TRG N F+ R IV +++L  FT Q
Sbjct:    5 EEINYKSPEIKGYTVGVAVDPVKIDSLAAFGTPDFVGQRIVDVEKKKDGVIDVQLLKAESLESGGQVFYEVEYTSDTTRGFNHFITRVIVVNQRLFAFTAQ 105          
BLAST of EWM25422.1 vs. NCBI_GenBank
Match: gi|1210524264|dbj|GAX16993.1| (hypothetical protein FisN_5Hh372 [Fistulifera solaris])

HSP 1 Score: 87.4261 bits (215), Expect = 4.320e-17
Identity = 52/157 (33.12%), Postives = 80/157 (50.96%), Query Frame = 0
Query:  115 ASSSGIF-----RFLY----PETWTSAPKLLQTHQEEVTLKSKNVLGFSAGVAVDPVRIESIQQSGSPSEVGARIVALEGKKEGVSKVELLGSAQEGD---FYTFDYEVESTRGRNRFLARAIVADKKLIVFTIQIPMDAYEANEATISRMLQSLQV 259
            ASS  +F     RF Y    P  W    K L+TH +EV  KS ++  +  G+ VDPVRI+S+++ G+P+EV A++V  E  ++GV  V L   A   D   +Y  +Y  +  RG  RF+ +  V D+ L   T Q     Y      I++ + S ++
Sbjct:   69 ASSETVFKRQTDRFSYLFEPPTDWAPQNKPLKTHLDEVNFKSPSISKYEYGITVDPVRIKSLREFGTPAEVAAKVVLSELNRDGVFDVTLAEDAFAADNDAYYQLNYTSKGKRGEKRFITKFYVRDQMLFALTAQCLDSDYGKLRNEITKTVDSFRI 225          
BLAST of EWM25422.1 vs. NCBI_GenBank
Match: gi|223995381|ref|XP_002287374.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220976490|gb|EED94817.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 88.1965 bits (217), Expect = 4.783e-17
Identity = 55/165 (33.33%), Postives = 87/165 (52.73%), Query Frame = 0
Query:   88 ASFLQIK---PVIAADEGSGDKGSPTFVTCASSSGIFRFLY--PETWTSAPKLLQTHQEEVTLKSKNVLGFSAGVAVDPVRIESIQQSGSPSEVGARIVALEGKKEGVSKVELLGSAQEGD--FYTFDYEVESTRGRNRFLARAIVADKKLIVFTIQIPMDAYEA 245
            ASFL I    P  A +  + D    +  +   +   FR+    P ++T++ K L+TH +E+     +V G++ G+ VDPVRI++IQ+ G+P EV AR+V  E  ++GV +V L    +E     Y  +Y  +  RG  RF+ R  V D  L V T+Q     Y++
Sbjct:   82 ASFLMIPSTLPAFADETATADTQQQSAYSSPPNQK-FRYTVTPPPSFTASNKPLKTHLDEINFSPPDVRGYTLGITVDPVRIKTIQEFGTPEEVAARVVTAEVNRDGVFRVTLAKDPKEDTEGCYDVEYISDGKRGTKRFVTRIYVKDGFLYVLTLQSKEAEYDS 245          
BLAST of EWM25422.1 vs. NCBI_GenBank
Match: gi|397587573|gb|EJK53960.1| (hypothetical protein THAOC_26500 [Thalassiosira oceanica])

HSP 1 Score: 87.8113 bits (216), Expect = 7.243e-17
Identity = 60/179 (33.52%), Postives = 92/179 (51.40%), Query Frame = 0
Query:   88 ASFLQIKPVIAADEGSGDKGSPTFVTCASSSGIFRFLY----PETWTSAPKLLQTHQEEVTLKSKNVLGFSAGVAVDPVRIESIQQSGSPSEVGARIVALEGKKEGVSKVELLGSAQEG---DFYTFDYEVESTRGRNRFLARAIVADKKLIVFTIQIPMDAYE-ANEATISRMLQSLQ 258
            AS + + P +A   G     +  +V      G F+F Y    P ++TS+ K L+TH +E+   S +V G+  GV VDPVRI+SI++ G P +V AR+V  E  ++GV  V+L+  A E      Y  +Y  +  RG  RF+ R  V +  L V T Q     Y+ A E  +   ++S +
Sbjct:   99 ASLVLLSPSLACASGDDYGAAQPYVK--KGDGKFQFAYTVTPPASFTSSNKPLKTHLDEINF-SGDVRGYQVGVTVDPVRIKSIKEFGDPEQVAARVVTAEVNRDGVFDVKLVKDAAEDAQLGCYDVEYISDGKRGTKRFVTRIYVKEGFLYVLTFQSKEAEYDGAREQEVLNTVKSFK 274          
BLAST of EWM25422.1 vs. NCBI_GenBank
Match: gi|1189391867|gb|OSX78790.1| (hypothetical protein BU14_0098s0016 [Porphyra umbilicalis])

HSP 1 Score: 87.0409 bits (214), Expect = 5.901e-16
Identity = 54/162 (33.33%), Postives = 83/162 (51.23%), Query Frame = 0
Query:  121 FRFLYPETWTSAPKLLQTHQEEVTLKSKNVLGFSAGVAVD-PVRIESIQQSGSPSEVGARIVALEGKKEGVSKVELLGSAQE----------------------GDFYTFDYEVESTRGRNRFLARAIVADKKLIVFTIQIPMDAYEANEATISRMLQSLQV 259
            + F YP TW++  K ++TH  EV + +      S G+ VD P++I SI++ G+P  VGA+++ALE KK+    V L+ +A E                      G  Y  +Y V+S+RG   F+A+A VA  +L V T     D +EA    +  +L SL+V
Sbjct:  234 YSFRYPTTWSANKKPIKTHLSEVIVSAPKGSSASVGLVVDGPLKIGSIEEFGTPDAVGAKVLALERKKDSTKDVRLVRTASETLGVGGGAAAAAGVGQPAGLGNGVAYIVEYVVDSSRGVKHFVAKATVAAGQLYVMTATCKEDEFEAARGGLETVLASLRV 395          
BLAST of EWM25422.1 vs. NCBI_GenBank
Match: gi|1072232520|gb|OEU17251.1| (hypothetical protein FRACYDRAFT_151807, partial [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 79.337 bits (194), Expect = 8.226e-15
Identity = 46/144 (31.94%), Postives = 74/144 (51.39%), Query Frame = 0
Query:  121 FRFLYPETWTSAPKLLQTHQEEVTLKSKNVLGFSAGVAVDPVRIESIQQSGSPSEVGARIVALEGKKEGVSKVELLGSAQE-----GDFYTFDYEVESTRGRNRFLARAIVADKKLI-VFTIQIPMDAYEANEATISRMLQSLQ 258
            ++   P +   + K ++TH +EV   S++  G+  G+ VDPVRI SI++ G+P EV AR+V  E  ++GV  V LL    +      D Y   Y     RGR  +  +  ++  +L+ V T Q   D + A E  I + ++S Q
Sbjct:    6 YQIAIPSSMKESSKPIKTHLDEVNFMSESTRGYQYGITVDPVRITSIKEFGTPEEVAARVVTAEVNRDGVFDVTLLEDPYQINNGVVDAYVLKYLSVGKRGRKVYTNKIFISPSQLLYVLTAQCKEDDFPAQEKDIKKTIESFQ 149          
BLAST of EWM25422.1 vs. NCBI_GenBank
Match: gi|922858673|gb|KOO26778.1| (hypothetical protein Ctob_008093 [Chrysochromulina sp. CCMP291])

HSP 1 Score: 79.7221 bits (195), Expect = 3.185e-14
Identity = 44/136 (32.35%), Postives = 75/136 (55.15%), Query Frame = 0
Query:  121 FRFLYPETWTSAPKLLQTHQEEVTLKSKNVLGFSAGVAVDPVRIESIQQSGSPSEVGARIVALEGKKEGVSKVELLGSA--------QEGDFYTFDYEVESTRGRNRFLARAIVADKKLIVFTIQIPMDAYEANEA 248
            +R  YP  W +A K ++TH  E  L S    G   GV VDPV I+S++  G+  +V  R++A+E  ++GV+ V L  +A        +   +YT +Y  +S+RG+  F  +  +A ++L V  +Q  +D ++ +EA
Sbjct:   82 YRLEYPADWKAAGKPVKTHLHEALLSSPG--GLKLGVTVDPVVIDSLEAFGTLDQVTERVLAVETTRDGVNSVILRTNAAQAADAARRTPSYYTIEYATDSSRGKKLFSCKYCIAGRRLYVLQLQAKLDDFDGDEA 215          
The following BLAST results are available for this feature:
BLAST of EWM25422.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585107183|gb|EWM25422.1|0.000e+0100.00Photosystem II PsbP, oxygen evolving complex [Nann... [more]
gi|298707646|emb|CBJ25963.1|1.329e-2542.28Similar to photosystem II oxygen evolving complex ... [more]
gi|1210515766|dbj|GAX25289.1|1.468e-1733.12hypothetical protein FisN_5Lh372 [Fistulifera sola... [more]
gi|873236748|emb|CEL98426.1|2.107e-1745.54unnamed protein product [Vitrella brassicaformis C... [more]
gi|1210524264|dbj|GAX16993.1|4.320e-1733.12hypothetical protein FisN_5Hh372 [Fistulifera sola... [more]
gi|223995381|ref|XP_002287374.1|4.783e-1733.33predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|397587573|gb|EJK53960.1|7.243e-1733.52hypothetical protein THAOC_26500 [Thalassiosira oc... [more]
gi|1189391867|gb|OSX78790.1|5.901e-1633.33hypothetical protein BU14_0098s0016 [Porphyra umbi... [more]
gi|1072232520|gb|OEU17251.1|8.226e-1531.94hypothetical protein FRACYDRAFT_151807, partial [F... [more]
gi|922858673|gb|KOO26778.1|3.185e-1432.35hypothetical protein Ctob_008093 [Chrysochromulina... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5262rna5262Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications