rna5231, rna5231 (mRNA) Nannochloropsis gaditana

Overview
Namerna5231
Unique Namerna5231
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2027
Alignment locationCM002465.1:483634..485151 -

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Properties
Property NameValue
ProductRNA binding protein
Orig transcript idgnl|cribi|Naga_100005g18.6711.mrna
Orig protein idgnl|cribi|Naga_100005g18.6711
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:483634..485151 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100005g18gene5051Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5231rna5231-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25417.1cds5218Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5231 ID=rna5231|Name=rna5231|organism=Nannochloropsis gaditana|type=mRNA|length=2027bp
AAAAAGTAATTCGGCAGAACAAAGACGAAGTCGCCGGAGCGGCAGTCTGG
GCGAGACATTCGATGCTGACAGCTGTGGCACTCCCAGCGGCGCCGAGATG
TTGGACCGTGCCGTGACTTACGGCGAAACGTGCCGTGCGCACGCTGTCAC
GCAGACCAAGGGTTCCAGATTTTGCACGACCTTGACAATGTTTGACTGAC
AGCCGCATGTTCAGCAAGTTGTCGGTCGGAGAGTCTAGCACCAGGTCCGT
CTTTCGCCCGCTGTGACACGAATTATATAAAGCTTTCTATTTCTTCATCA
TAGGCCAAAAGTAGGCCTTGAATGCGTGCTTCTTCCAAATTGTCGTCCAT
CTCCTGCGCCTTGCCAACAGTGTGCGCCGCCTTCACGGTGGCTTTTTCTT
TTTCGGTCTGCAGTCCCCTTGGTAACCTCCCCTATCGTTTGGTCTCCCGA
TACTGTGTTGCACGGAAGACTCTCTCGAGCCACATGGAACCGATATTATC
CTCGCCAACCACACAAGACTTACCGACCTTTTTGAAGAAGGGTCGAGCGG
CACTGCTCTTGTGCAATGAAAAGAAGGCACGGGTCAAAGTAGTATTGGGA
AACGAAGCTGCCGACGCGGACAGCATTGTGTCATCCATTTGTCTAGCCCA
ATTCTTGCAGATGACTCGATCATCTAATGAGAAATTGGGAAGTGTGCATT
ATGTTCCTATCTTGCCCTTGCGTCGCACAGAGCTAAAGTTGCGTCCCGAA
ACCTTGCTTCTATTCCGCCTTGCCGGCATCTCGGAGGCTCTCCGGGACAC
GGTCTGCATCGACGAGGTGGACTTACTAGGCGCGCACGCAAAAGATGCCC
TGACGGGTTTAGTGCTGGTCGACCACAACAAGCTCACGGCCTCATTGCAG
AACCTAGGACCGGCGGTTGAGCGCATCGTGGATCATCACGAGGACCAAGG
TCTCTACGAGAAGGTAACGGGCGGGAACCGCGACATTGCCTTTGCCGCCG
ACGCTGAGGGCTTCGACGCCTTGTACTCAAGCGCGCAGCAAAGTCAAAGT
GATATCAGTCGTGTCCCGAGCCTGAGCAGCAACAGCAGCACGGCGGGGGG
TCGTGCCCTTGTAGCTTCGACATGCACCCTCGTTGCAGAGCGGTATCTGT
CCAATCCCGGCTTGCTCTGCCCGGCCGTCGCCATGCTTCTCCTTGGCGTT
GTACTTTTGGACTCCGTGTGCTTAGATGCCAGCGCAGGCAAGGTAACTTC
TCGAGACGAGGCAGTGGCGAAGGCGTTGGCAGCAGGCTTGGCCGGGAGGA
GTGACAGGGAGTGGAAGAGCGAGCAGGCCCTCTACAGGAATCTCTCGGGG
GCTAAGTTCGATCAAGGATGGTGGCAGTCCTTAGAGGTAAACGAGGCCTT
GGGGCTCGACTACAAGTCTTTCGCCGCCAGCTTACAGACTCGGCAAGCTC
TTTGGTTCGGCATGAGCTCCATCCTTGTCGCTCTGAACGACCTCCTGTGC
AAGGTCTCAGGCGTGGAGTCTGTCTTGGAGCGATTCGCGTCCTCTCGAGG
GGTGGAGCTGCTTGTGCTCATGTCGCTGGTCATGCCCGCAGGGGGAGCAA
AGGACGGAGGTATACAACGCACCTTGGCCGTGTACGCGTCCTGTCCCGTC
CTTGGGCGGACCTTGGCGACCGTGCTGCTCACACCCGAAACGGAAGCGGG
CGATCTGCAGCTAGAGCTCTGGCCACGTCCCGAGTGGTGGGACCGAGAGC
GCTGTAACGAAGGGGGGGATAGAGAGCAGCGGCTGTGGTGCTTCAAGCAA
GGCAACGTGCAGGCATCTCGCAAGCAGGTAGAGCCCATCTTGCGCCGCTT
ACTGGAGGAAAACGAGGGGATCCTGTTCCCGAAATGAGACTTTTTGTAAT
GTGAATAGTGGCAGCGATGCTAGTCGACGTGCATAGCCATAAAAAAGGAA
AAGAAAACAAATAAGGCCAAGGCCGAAACAAATGAGGTAATCGGATGGAA
GTTGCCCGGCCTGGTGGTGCTACGGTA
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protein sequence of rna5231

>rna5231-protein ID=rna5231-protein|Name=rna5231|organism=Nannochloropsis gaditana|type=polypeptide|length=299bp
MASTEDKSMNAKERRLLRRAQERAKAASGASSIPATSNPPGVVLSKNGKK
NVTRKPETSEEPNPQVDTAPSAQDPGSLNAKQRRLLKRAQERAAGQAGNN
IPPKLLSNNGAILEEQSSDVSSKKRRRIHENPHIVFVGQLSFDTSAHELR
EHLENGGVTGPIHVRLLTEKGSNKSRGQAFVTLIDAENQYKCLSLHHSKL
KNRVINVERSCGGRNLDKRKGKLQALRREQREAIETTCDRIVKEKTEAGQ
LLPGELDEQAVKLLTRTIESASLTGDVLPDERITIIMRVNGQPVSCRKG
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mRNA from alignment at CM002465.1:483634..485151-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5231 ID=rna5231|Name=rna5231|organism=Nannochloropsis gaditana|type=mRNA|length=1518bp|location=Sequence derived from alignment at CM002465.1:483634..485151- (Nannochloropsis gaditana)
ATGGCGAGCACCGAAGACAAGAGCATGAATGCAAAGGAGAGACGCTTGCT
TCGGCGGGCGCAGGAGAGGGCGAAAGCGGCGTCGGGCGCTTCTAGTATTC
CCGCAACAAGCAACCCGCCGGGGGTGGTCTTGTCGAAGAATGGAAAAAAG
AATGTGACTAGAAAACCTGAGACTAGCGAGGAACCCAATCCCCAGGTGGA
TACAGCTCCAAGCGCGCAAGACCCAGGAAGTTTGAACGCAAAGCAGCGGC
GCTTGCTGAAGCGTGCTCAGGAGAGAGCTGCAGGACAAGCAGGAAACAAC
ATCCCACCTAAACTGCTTTCGAATAATGGCGCGATTTTGGAAGAGCAAAG
CAGTGACGTGAGTAGCAAAAAACGGAGACGAATTCATGAAAACCCACACA
TCGTCTTCGTGGGCCAGCTTAGCTTTGATACCAGCGCCCACGAGTTGCGA
GAGCACCTGGAGAATGGCGGGGTCACCGGCCCTATACACGTCCGATTGCT
GACCGAGAAAGGCTCGAACAAGTCTCGAGGCCAAGCCTTTGTCACGCTTA
TTGATGCTGAGAATCAATACAAATGCCTGTCTTTGCACCACAGCAAGCTA
AAGAATCGAGTCATCAATGTGGAGCGCTCATGTGGGGGCCGTAACCTGGA
CAAGCGGAAGGGAAAGCTGCAAGCCTTGCGGAGGGAGCAACGGGAGGCGA
TTGAGACCACCTGCGATCGTATTGTCAAAGAAAAAACAGAAGCGGGACAG
CTACTGCCAGGAGAGCTGGATGAGCAGGCCGTGAAGCTGCTGACTCGGTA
CGACGGGCATACAGCGGCGGGCATTTTGGAGGCGTACTGCGCGGAGGACC
GAGCGCGCTTGCGCAACCCATCGGCCTACTTTATGATGCTGGCCAAGAGA
GTCATTGAGGAAGGGGTGGAGGCCGTGCTCGCGGACACGGCGACAAGCAA
AAGCGGGCGCGAGGCCGAAGTTTGGAAGCGCGGTGATGAGGCGGGGGCCA
AGGAGGGCGAGGAGGAGGTTAAGAAGGGCGAGGGAGAGACGCGAATCGTT
GAAAAGGGGGACGCCTCCGCAGGCGCGCGGGAGGAGGCAGAGGACGGGAC
GGACAGTGAGGAAGAGGAGGAGGAGAGGGGGTGGGGCGCGCCACTTCACG
AGGGGCTTGTGGGCCGGGAGGTGGGGAACGAGCGAGGAAGGCCAAGGCGG
AGGGGGGGAATGTCGAAGATAGGGAGCCACAGGGCAGGAGGTGCGGGAAG
GAGATTGGCGAGCGGGGATTATTATGACATTTCTCAAGTTTTCGGGTCTG
TGCGGGGCCGCGGCGGTTTCAGAGGCCTTGCGAGCGTCGGTCGGGGTGGA
GGACGCTAGCTCGAAGGTAAGCGATGGGGGATGGGCTGAAGGACGGGGCC
GTGGCAGCACGCCAGAACGATCGAGAGCGCGAGTTTGACTGGCGACGTCC
TACCTGATGAACGAATTACAATTATCATGCGTGTCAACGGACAGCCCGTC
TCTTGTCGTAAGGGATAG
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Coding sequence (CDS) from alignment at CM002465.1:483634..485151-

>rna5231 ID=rna5231|Name=rna5231|organism=Nannochloropsis gaditana|type=CDS|length=1800bp|location=Sequence derived from alignment at CM002465.1:483634..485151- (Nannochloropsis gaditana)
AACGATCGAGAGCGCGAGTTTGACTGGCGACGTCCTACCTGATGAACGAA
TTACAATTATCATGCGTGTCAACGGACAGCCCGTCTCTTGTCGTAAGGGA
TAGATGGCGAGCACCGAAGACAAGAGCATGAATGCAAAGGAGAGACGCTT
GCTTCGGCGGGCGCAGGAGAGGGCGAAAGCGGCGTCGGGCGCTTCTAGTA
TTCCCGCAACAAGCAACCCGCCGGGGGTGGTCTTGTCGAAGAATGGAAAA
AAGAATGTGACTAGAAAACCTGAGACTAGCGAGGAACCCAATCCCCAGGT
GGATACAGCTCCAAGCGCGCAAGACCCAGGAAGTTTGAACGCAAAGCAGC
GGCGCTTGCTGAAGCGTGCTCAGGAGAGAGCTGCAGGACAAGCAGGAAAC
AACATCCCACCTAAACTGCTTTCGAATAATGGCGCGATTTTGGAAGAGCA
AAGCAGTGACGTGAGTAGCAAAAAACGGAGACGAATTCATGAAAACCCAC
ACATCGTCTTCGTGGGCCAGCTTAGCTTTGATACCAGCGCCCACGAGTTG
CGAGAGCACCTGGAGAATGGCGGGGTCACCGGCCCTATACACGTCCGATT
GCTGACCGAGAAAGGCTCGAACAAGTCTCGAGGCCAAGCCTTTGTCACGC
TTATTGATGCTGAGAATCAATACAAATGCCTGTCTTTGCACCACAGCAAG
CTAAAGAATCGAGTCATCAATGTGGAGCGCTCATGTGGGGGCCGTAACCT
GGACAAGCGGAAGGGAAAGCTGCAAGCCTTGCGGAGGGAGCAACGGGAGG
CGATTGAGACCACCTGCGATCGTATTGTCAAAGAAAAAACAGAAGCGGGA
CAGCTACTGCCAGGAGAGCTGGATGAGCAGGCCGTGAAGCTGCTGACTCG
AACGATCGAGAGCGCGAGTTTGACTGGCGACGTCCTACCTGATGAACGAA
TTACAATTATCATGCGTGTCAACGGACAGCCCGTCTCTTGTCGTAAGGGA
TAGATGGCGAGCACCGAAGACAAGAGCATGAATGCAAAGGAGAGACGCTT
GCTTCGGCGGGCGCAGGAGAGGGCGAAAGCGGCGTCGGGCGCTTCTAGTA
TTCCCGCAACAAGCAACCCGCCGGGGGTGGTCTTGTCGAAGAATGGAAAA
AAGAATGTGACTAGAAAACCTGAGACTAGCGAGGAACCCAATCCCCAGGT
GGATACAGCTCCAAGCGCGCAAGACCCAGGAAGTTTGAACGCAAAGCAGC
GGCGCTTGCTGAAGCGTGCTCAGGAGAGAGCTGCAGGACAAGCAGGAAAC
AACATCCCACCTAAACTGCTTTCGAATAATGGCGCGATTTTGGAAGAGCA
AAGCAGTGACGTGAGTAGCAAAAAACGGAGACGAATTCATGAAAACCCAC
ACATCGTCTTCGTGGGCCAGCTTAGCTTTGATACCAGCGCCCACGAGTTG
CGAGAGCACCTGGAGAATGGCGGGGTCACCGGCCCTATACACGTCCGATT
GCTGACCGAGAAAGGCTCGAACAAGTCTCGAGGCCAAGCCTTTGTCACGC
TTATTGATGCTGAGAATCAATACAAATGCCTGTCTTTGCACCACAGCAAG
CTAAAGAATCGAGTCATCAATGTGGAGCGCTCATGTGGGGGCCGTAACCT
GGACAAGCGGAAGGGAAAGCTGCAAGCCTTGCGGAGGGAGCAACGGGAGG
CGATTGAGACCACCTGCGATCGTATTGTCAAAGAAAAAACAGAAGCGGGA
CAGCTACTGCCAGGAGAGCTGGATGAGCAGGCCGTGAAGCTGCTGACTCG
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Synonyms
Publications