EWM25417.1, cds5218 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM25417.1 vs. NCBI_GenBank
Match: gi|585107178|gb|EWM25417.1| (RNA binding protein [Nannochloropsis gaditana]) HSP 1 Score: 606.29 bits (1562), Expect = 0.000e+0 Identity = 299/299 (100.00%), Postives = 299/299 (100.00%), Query Frame = 0
Query: 1 MASTEDKSMNAKERRLLRRAQERAKAASGASSIPATSNPPGVVLSKNGKKNVTRKPETSEEPNPQVDTAPSAQDPGSLNAKQRRLLKRAQERAAGQAGNNIPPKLLSNNGAILEEQSSDVSSKKRRRIHENPHIVFVGQLSFDTSAHELREHLENGGVTGPIHVRLLTEKGSNKSRGQAFVTLIDAENQYKCLSLHHSKLKNRVINVERSCGGRNLDKRKGKLQALRREQREAIETTCDRIVKEKTEAGQLLPGELDEQAVKLLTRTIESASLTGDVLPDERITIIMRVNGQPVSCRKG 299
MASTEDKSMNAKERRLLRRAQERAKAASGASSIPATSNPPGVVLSKNGKKNVTRKPETSEEPNPQVDTAPSAQDPGSLNAKQRRLLKRAQERAAGQAGNNIPPKLLSNNGAILEEQSSDVSSKKRRRIHENPHIVFVGQLSFDTSAHELREHLENGGVTGPIHVRLLTEKGSNKSRGQAFVTLIDAENQYKCLSLHHSKLKNRVINVERSCGGRNLDKRKGKLQALRREQREAIETTCDRIVKEKTEAGQLLPGELDEQAVKLLTRTIESASLTGDVLPDERITIIMRVNGQPVSCRKG
Sbjct: 1 MASTEDKSMNAKERRLLRRAQERAKAASGASSIPATSNPPGVVLSKNGKKNVTRKPETSEEPNPQVDTAPSAQDPGSLNAKQRRLLKRAQERAAGQAGNNIPPKLLSNNGAILEEQSSDVSSKKRRRIHENPHIVFVGQLSFDTSAHELREHLENGGVTGPIHVRLLTEKGSNKSRGQAFVTLIDAENQYKCLSLHHSKLKNRVINVERSCGGRNLDKRKGKLQALRREQREAIETTCDRIVKEKTEAGQLLPGELDEQAVKLLTRTIESASLTGDVLPDERITIIMRVNGQPVSCRKG 299
BLAST of EWM25417.1 vs. NCBI_GenBank
Match: gi|299471246|emb|CBN79101.2| (conserved unknown protein (Partial), partial [Ectocarpus siliculosus]) HSP 1 Score: 127.487 bits (319), Expect = 7.974e-30 Identity = 70/138 (50.72%), Postives = 94/138 (68.12%), Query Frame = 0
Query: 131 NPHIVFVGQLSFDTSAHELREHLEN-GGVTGPIHVRLLTEKGSN--KSRGQAFVTLIDAENQYKCLSLHHSKLKNRVINVERSCGGRNLDKRKG-KLQALRREQREAIETTCDRIVKEKTEAGQLLPGELDEQAVKLL 264
NP IVFVGQL+F T+A + EH GG+ G I VRLLT KG+N KSRG AF+ + DAE+ Y+CLSLHHS+L R++NVER+ GG +RKG ++Q R EQ+E +++ R++ E AG+L ELDE A +L
Sbjct: 178 NPFIVFVGQLAFSTTAERVEEHFRTRGGIEGNISVRLLTRKGTNPPKSRGMAFLQVDDAESAYQCLSLHHSRLDGRLLNVERTSGGGK--ERKGERIQEKRGEQKEFMKSVVQRVLGEFITAGRLGKTELDEAAQGVL 313
BLAST of EWM25417.1 vs. NCBI_GenBank
Match: gi|676391625|ref|XP_009039090.1| (hypothetical protein AURANDRAFT_65840 [Aureococcus anophagefferens] >gi|323450252|gb|EGB06134.1| hypothetical protein AURANDRAFT_65840 [Aureococcus anophagefferens]) HSP 1 Score: 121.324 bits (303), Expect = 4.454e-27 Identity = 87/226 (38.50%), Postives = 115/226 (50.88%), Query Frame = 0
Query: 70 PSAQDP--GSLNAKQRRLLKRAQER---------------AAGQAGNNIPPKLLSNNGAILEEQSSDVSSKKR-RRIHENPHIVFVGQLSFDTSAHELREHLENGGVTGPIHVRLLTEKGSNKSRGQAFVTLIDAENQYKCLSLHHSKLKNRVINVERSCGGRNLDKRKGKLQALRREQREAIETTCDRIVKEKTEAGQLLPGELDEQAVKLLTR---TIESASLT 274
P A P G L AK+RR LKRA ER AA G + + A E SSKKR R P + FVGQL F +A L+ + V G + VRLLT+ + KSRG AFV AE Y C++LHH+++ R INVERS GG + +KGKL R Q + +E T DR+++E +GQL E+D+ +LL R + A+LT
Sbjct: 632 PPAAAPSDGGLTAKERRKLKRAAERGEAAPAPTKTTSAFDAAAAGGTSKERRAAKRAAARGEAGGGAKSSKKRPREPSSAPLVAFVGQLGFSVTAERLKAFFTSQDVPGTLKVRLLTDAKTGKSRGMAFVQCETAEALYACVALHHAQIDGRRINVERSAGG-GREAKKGKLAEHRAHQSKKVEETVDRVLEEFVASGQLRRDEVDDGVRRLLQRRSGRVAHAALT 856
BLAST of EWM25417.1 vs. NCBI_GenBank
Match: gi|1210526214|dbj|GAX15132.1| (nucleolar protein 6 [Fistulifera solaris]) HSP 1 Score: 108.612 bits (270), Expect = 7.233e-24 Identity = 84/275 (30.55%), Postives = 132/275 (48.00%), Query Frame = 0
Query: 7 KSMNAKERRLLRRAQERAKAASGASSIPATSNPPGVVLSKNGKKNVTRKPETSEEPNPQVDTAPSAQDPGSLNAKQRRLLKRAQERAAGQAGNNIPPKLLSNNGAILEEQSSDVSSKKRRRIHEN-------PHIVFVGQLSFDTSAHELREHLE----NGGVT---GPIHVRLLTEKGSNKSRGQAFVTLIDAENQYKCLSLHHSKLKNRVINVERSC-GGRNLDKRKGKLQALRREQREAIETTCDRIVKEKTEAGQLLPGELDEQAVKLLTR 266
K A+ +RL +RA+ R + PP LS N K R+ + S + ++ AK RR KR E A + +LL+ EE + +S +++ + P+I+F+GQLS+DT+ L +H + + G +RLLT+ + KSRG AFV L E + CL LH + L+ R INVE+S GG++ ++RK KL+ R +Q E IE+ +++ E + G++ GELDE + L R
Sbjct: 3 KKSKAQIKRLAKRAEARGE----------VYEPPLEELSSNNKLLAARQLQQE---------LTSIEKDDTMKAKDRRSAKRKAEAIALEKTGCSADELLAWYKEQKEEDRPETNSNNKKKTEDTQHDKRKIPYILFIGQLSYDTTKESLLQHFQTELADDGFDVNEQTCQIRLLTDPKTKKSRGMAFVELSTPELMHACLKLHKTMLEGRRINVEKSAGGGKHSEQRKEKLKTFRTQQEEYIESMVAKMIDEYKQKGEIQDGELDEGVIALCQR 258
BLAST of EWM25417.1 vs. NCBI_GenBank
Match: gi|1210517343|dbj|GAX23600.1| (nucleolar protein 6 [Fistulifera solaris]) HSP 1 Score: 107.842 bits (268), Expect = 1.434e-23 Identity = 72/213 (33.80%), Postives = 112/213 (52.58%), Query Frame = 0
Query: 77 SLNAKQRRLLKRAQERAAGQAGNNIPPKLL-------------SNNGAILEEQSSDVSSKKRRRIHENPHIVFVGQLSFDTSAHELREHL------ENGGVT---GPIHVRLLTEKGSNKSRGQAFVTLIDAENQYKCLSLHHSKLKNRVINVERSC-GGRNLDKRKGKLQALRREQREAIETTCDRIVKEKTEAGQLLPGELDEQAVKLLTR 266
S+ AK RR KR E A + +LL +NN +++ +D + +R+I P+I+F+GQLS+DT+ L +H ++ G +RLLT+ + KSRG AFV L E + CL LH + L+ R INVE+S GG++ ++RK KL+ R +Q E IE+ +++ E + G++ GELDE + L R
Sbjct: 64 SMKAKDRRSAKRKAEAIALEKSGCSADELLAWYKEQKDDDRPETNNSR--KQKKADATQTDKRKI---PYILFIGQLSYDTTKESLLQHFQSELADDDDGFDINEQTCQIRLLTDAKTKKSRGMAFVELSTPELMHACLKLHKTMLEGRRINVEKSAGGGKHSEQRKEKLKTFRTQQEEYIESMVTKMIDEYKQKGEIQDGELDEGVIALCQR 271
BLAST of EWM25417.1 vs. NCBI_GenBank
Match: gi|224001980|ref|XP_002290662.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220974084|gb|EED92414.1| predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 108.612 bits (270), Expect = 4.288e-23 Identity = 71/197 (36.04%), Postives = 98/197 (49.75%), Query Frame = 0
Query: 77 SLNAKQRRLLKRAQERAAGQAGNNIPPKLLSNNGAILEEQSSDVSSKKRRRIHENPHIVFVGQLSFDTSAHELREHLENGGVTGP-------IHVRLLTEKGSNKSRGQAFVTLIDAENQYKCLSLHHSKLKNRVINVERSCGGRNLDKRKGKLQALRREQREAIETTCDRIVKEKTEAGQLLPGELDEQAVKLLTR 266
++NAK+RR KR E A + +LL I D +KK P+IVF+GQLS+ T+ + +H N GP + +RLLT+ + KSRG AFV L E Y+CL +H + L R INVER+ GG +K K+ + R EQ I T D I+ E + G + ELDE + L R
Sbjct: 144 AMNAKERRSAKRKAEAIATEESGCPANELLEWYDTISPPNKEDKDAKKI------PYIVFIGQLSYSTTTDMIYDHFHN--TLGPDVITKESVKIRLLTDSKTKKSRGMAFVELDSPEAMYECLRMHLTHLDGRRINVERTAGG-GAALKKSKITSYREEQTTYISQTMDHILSEYMKKGDIDEDELDEGVIALCKR 331
BLAST of EWM25417.1 vs. NCBI_GenBank
Match: gi|219111927|ref|XP_002177715.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217410600|gb|EEC50529.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 105.531 bits (262), Expect = 7.393e-23 Identity = 60/142 (42.25%), Postives = 89/142 (62.68%), Query Frame = 0
Query: 132 PHIVFVGQLSFDTSAHELREHL------ENGGVTGPIHVRLLTEKGSNKSRGQAFVTLIDAENQYKCLSLHHSKLKNRVINVERSCGGR-NLDKRKGKLQALRREQREAIETTCDRIVKEKTEAGQLLPGELDEQAVKLLTR 266
P+IVFVGQLS+DT+ L +H+ E+ + +RLLT+ + KSRG AFV + D E Y CL LHH+ L+ R +NVER+ GGR + D+RK K+Q R+EQ + T D +++E ++G++ P E+D+ V L R
Sbjct: 142 PYIVFVGQLSYDTTKDSLFQHIRKEIGTEHKVNPSTVKIRLLTDAKTKKSRGMAFVEVPDPEMLYACLKLHHTFLEGRRLNVERTAGGRKSSDQRKTKIQQRRQEQEQYFGTVVDNMLQEHYKSGEIKPHEIDDGVVGLCKR 283
BLAST of EWM25417.1 vs. NCBI_GenBank
Match: gi|397642402|gb|EJK75211.1| (hypothetical protein THAOC_03075 [Thalassiosira oceanica]) HSP 1 Score: 98.2117 bits (243), Expect = 1.900e-19 Identity = 70/199 (35.18%), Postives = 104/199 (52.26%), Query Frame = 0
Query: 78 LNAKQRRLLKRAQERAAGQ-----AGNNIPPKLLSNNGAILEEQSSDVSSKKRRRIHENPHIVFVGQLSFDTSAHELREHLEN----GGVTG-PIHVRLLTEKGSNKSRGQAFVTLIDAENQYKCLSLHHSKLKNRVINVERSCGGRNLDKRKGKLQALRREQREAIETTCDRIVKEKTEAGQLLPGELDEQAVKLLTR 266
LN+K+RR KR E A + G++ +LL A E + K+ ++ N VF+GQL+F+T+ L H+++ +T +RLLT+ + +SRG AFVTL E +Y+CL LH + L R INVE S GG ++ RK K+ R Q + I T DRI++ G++ ELDE + L R
Sbjct: 172 LNSKERRSAKRKAEAIASEQLQPDGGSSSTEELL----AWYETVRPTSTEKESGKVSYN---VFIGQLAFNTTKEGLFGHIQSTLGKDLITAESCQIRLLTDTKTKRSRGMAFVTLSSGELRYECLKLHLTYLDGRRINVELSPGG-GIEARKSKISTFRESQAKYISATVDRIIQSFVSQGEIEADELDEGVLGLCKR 362
BLAST of EWM25417.1 vs. NCBI_GenBank
Match: gi|1072229977|gb|OEU14711.1| (hypothetical protein FRACYDRAFT_150968, partial [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 93.2041 bits (230), Expect = 1.919e-18 Identity = 55/145 (37.93%), Postives = 82/145 (56.55%), Query Frame = 0
Query: 131 NPHIVFVGQLSFDTSAHELREHLENG-GVTGPI-----HVRLLTEKGSNKSRGQAFVTLI--DAENQYKCLSLHHSKLKNRVINVERSCGG-RNLDKRKGKLQALRREQREAIETTCDRIVKEKTEAGQLLPGELDEQAVKLLTR 266
+P I FVGQLS++T+ +L H+ + G P+ +R+LT+ + +SRG AFV + D E Y L+LH + LK R IN+ERS GG ++ + RK KL R+EQ ++I E + G+L ELDE + +L R
Sbjct: 141 DPLIAFVGQLSYETTIDDLFGHIHSLLGDDYPVSKEMVKIRILTDAKTQRSRGMAFVEITNGDPEFLYALLTLHQTMLKGRRINIERSAGGKKHSEARKTKLDHYRKEQESHFAEVVEKIFSEYKKTGELRENELDEGVITVLKR 285
BLAST of EWM25417.1 vs. NCBI_GenBank
Match: gi|1214683777|gb|OWZ01507.1| (hypothetical protein PHMEG_00027084 [Phytophthora megakarya]) HSP 1 Score: 92.8189 bits (229), Expect = 4.029e-18 Identity = 79/242 (32.64%), Postives = 116/242 (47.93%), Query Frame = 0
Query: 8 SMNAKERRLLRRAQERAKAASGASSIP-------------ATSNPPGVVLSKNGKKNVTR----KPETSEEPNPQVDTAPSAQDPGSLNAKQRRLLKRAQERAAGQAGNNIPPKLLSNNGAILEEQSSDVSSKKRRRIHENPHIVFVGQLSFDTSAHELREHLENGGVTGPIHVRLLTEKGSNKSRGQAFVTLIDAENQYKCLSLHHSKLKNRVINVE--RSCGGRNLDKRKGKLQALRREQ 230
++NAK+RR LRR E G +I A L+ ++ + R K E ++ PN +V + Q+ LNA+QRRLLKR +R A PPK A EE S K R+ IH +FVGQL F + +R+H G I +R+LT+K + + +G AF+ + D++ LS HH+ L+ R INVE S GG + R+ K+ LR++Q
Sbjct: 9 TLNAKQRRKLRREHE----LEGCVAIKEEVKEEVVKVEPIAQQVEAATTLNAKERRRLARLAQQKTEVADAPNTEVAASTDGQE---LNAQQRRLLKRQAKRQAAGVEEKRPPKKHKKQAATGEEDSP----KNRKSIHLT---LFVGQLPFRATEASIRKHFAEAG---EIKLRMLTDKKTKRFKGTAFIEVKDSKALGAALSRHHTLLQGRRINVELTASGGGNKSENRRTKIDLLRKKQ 233 The following BLAST results are available for this feature:
BLAST of EWM25417.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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