EWM25417.1, cds5218 (CDS) Nannochloropsis gaditana

Overview
NameEWM25417.1
Unique Namecds5218
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002465.1:484355..485151 -
Alignment locationCM002465.1:483634..483736 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM25417.1
ProductRNA binding protein
Orig transcript idgnl|cribi|Naga_100005g18.6711.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:484355..485151 -
CM002465.1supercontigCM002465.1:483634..483736 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0000166nucleotide binding
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR012677Nucleotide-bd_a/b_plait
IPR000504RRM_dom
Homology
BLAST of EWM25417.1 vs. NCBI_GenBank
Match: gi|585107178|gb|EWM25417.1| (RNA binding protein [Nannochloropsis gaditana])

HSP 1 Score: 606.29 bits (1562), Expect = 0.000e+0
Identity = 299/299 (100.00%), Postives = 299/299 (100.00%), Query Frame = 0
Query:    1 MASTEDKSMNAKERRLLRRAQERAKAASGASSIPATSNPPGVVLSKNGKKNVTRKPETSEEPNPQVDTAPSAQDPGSLNAKQRRLLKRAQERAAGQAGNNIPPKLLSNNGAILEEQSSDVSSKKRRRIHENPHIVFVGQLSFDTSAHELREHLENGGVTGPIHVRLLTEKGSNKSRGQAFVTLIDAENQYKCLSLHHSKLKNRVINVERSCGGRNLDKRKGKLQALRREQREAIETTCDRIVKEKTEAGQLLPGELDEQAVKLLTRTIESASLTGDVLPDERITIIMRVNGQPVSCRKG 299
            MASTEDKSMNAKERRLLRRAQERAKAASGASSIPATSNPPGVVLSKNGKKNVTRKPETSEEPNPQVDTAPSAQDPGSLNAKQRRLLKRAQERAAGQAGNNIPPKLLSNNGAILEEQSSDVSSKKRRRIHENPHIVFVGQLSFDTSAHELREHLENGGVTGPIHVRLLTEKGSNKSRGQAFVTLIDAENQYKCLSLHHSKLKNRVINVERSCGGRNLDKRKGKLQALRREQREAIETTCDRIVKEKTEAGQLLPGELDEQAVKLLTRTIESASLTGDVLPDERITIIMRVNGQPVSCRKG
Sbjct:    1 MASTEDKSMNAKERRLLRRAQERAKAASGASSIPATSNPPGVVLSKNGKKNVTRKPETSEEPNPQVDTAPSAQDPGSLNAKQRRLLKRAQERAAGQAGNNIPPKLLSNNGAILEEQSSDVSSKKRRRIHENPHIVFVGQLSFDTSAHELREHLENGGVTGPIHVRLLTEKGSNKSRGQAFVTLIDAENQYKCLSLHHSKLKNRVINVERSCGGRNLDKRKGKLQALRREQREAIETTCDRIVKEKTEAGQLLPGELDEQAVKLLTRTIESASLTGDVLPDERITIIMRVNGQPVSCRKG 299          
BLAST of EWM25417.1 vs. NCBI_GenBank
Match: gi|299471246|emb|CBN79101.2| (conserved unknown protein (Partial), partial [Ectocarpus siliculosus])

HSP 1 Score: 127.487 bits (319), Expect = 7.974e-30
Identity = 70/138 (50.72%), Postives = 94/138 (68.12%), Query Frame = 0
Query:  131 NPHIVFVGQLSFDTSAHELREHLEN-GGVTGPIHVRLLTEKGSN--KSRGQAFVTLIDAENQYKCLSLHHSKLKNRVINVERSCGGRNLDKRKG-KLQALRREQREAIETTCDRIVKEKTEAGQLLPGELDEQAVKLL 264
            NP IVFVGQL+F T+A  + EH    GG+ G I VRLLT KG+N  KSRG AF+ + DAE+ Y+CLSLHHS+L  R++NVER+ GG    +RKG ++Q  R EQ+E +++   R++ E   AG+L   ELDE A  +L
Sbjct:  178 NPFIVFVGQLAFSTTAERVEEHFRTRGGIEGNISVRLLTRKGTNPPKSRGMAFLQVDDAESAYQCLSLHHSRLDGRLLNVERTSGGGK--ERKGERIQEKRGEQKEFMKSVVQRVLGEFITAGRLGKTELDEAAQGVL 313          
BLAST of EWM25417.1 vs. NCBI_GenBank
Match: gi|676391625|ref|XP_009039090.1| (hypothetical protein AURANDRAFT_65840 [Aureococcus anophagefferens] >gi|323450252|gb|EGB06134.1| hypothetical protein AURANDRAFT_65840 [Aureococcus anophagefferens])

HSP 1 Score: 121.324 bits (303), Expect = 4.454e-27
Identity = 87/226 (38.50%), Postives = 115/226 (50.88%), Query Frame = 0
Query:   70 PSAQDP--GSLNAKQRRLLKRAQER---------------AAGQAGNNIPPKLLSNNGAILEEQSSDVSSKKR-RRIHENPHIVFVGQLSFDTSAHELREHLENGGVTGPIHVRLLTEKGSNKSRGQAFVTLIDAENQYKCLSLHHSKLKNRVINVERSCGGRNLDKRKGKLQALRREQREAIETTCDRIVKEKTEAGQLLPGELDEQAVKLLTR---TIESASLT 274
            P A  P  G L AK+RR LKRA ER               AA   G +   +      A  E      SSKKR R     P + FVGQL F  +A  L+    +  V G + VRLLT+  + KSRG AFV    AE  Y C++LHH+++  R INVERS GG   + +KGKL   R  Q + +E T DR+++E   +GQL   E+D+   +LL R    +  A+LT
Sbjct:  632 PPAAAPSDGGLTAKERRKLKRAAERGEAAPAPTKTTSAFDAAAAGGTSKERRAAKRAAARGEAGGGAKSSKKRPREPSSAPLVAFVGQLGFSVTAERLKAFFTSQDVPGTLKVRLLTDAKTGKSRGMAFVQCETAEALYACVALHHAQIDGRRINVERSAGG-GREAKKGKLAEHRAHQSKKVEETVDRVLEEFVASGQLRRDEVDDGVRRLLQRRSGRVAHAALT 856          
BLAST of EWM25417.1 vs. NCBI_GenBank
Match: gi|1210526214|dbj|GAX15132.1| (nucleolar protein 6 [Fistulifera solaris])

HSP 1 Score: 108.612 bits (270), Expect = 7.233e-24
Identity = 84/275 (30.55%), Postives = 132/275 (48.00%), Query Frame = 0
Query:    7 KSMNAKERRLLRRAQERAKAASGASSIPATSNPPGVVLSKNGKKNVTRKPETSEEPNPQVDTAPSAQDPGSLNAKQRRLLKRAQERAAGQAGNNIPPKLLSNNGAILEEQSSDVSSKKRRRIHEN-------PHIVFVGQLSFDTSAHELREHLE----NGGVT---GPIHVRLLTEKGSNKSRGQAFVTLIDAENQYKCLSLHHSKLKNRVINVERSC-GGRNLDKRKGKLQALRREQREAIETTCDRIVKEKTEAGQLLPGELDEQAVKLLTR 266
            K   A+ +RL +RA+ R +             PP   LS N K    R+ +             S +   ++ AK RR  KR  E  A +       +LL+      EE   + +S  +++  +        P+I+F+GQLS+DT+   L +H +    + G         +RLLT+  + KSRG AFV L   E  + CL LH + L+ R INVE+S  GG++ ++RK KL+  R +Q E IE+   +++ E  + G++  GELDE  + L  R
Sbjct:    3 KKSKAQIKRLAKRAEARGE----------VYEPPLEELSSNNKLLAARQLQQE---------LTSIEKDDTMKAKDRRSAKRKAEAIALEKTGCSADELLAWYKEQKEEDRPETNSNNKKKTEDTQHDKRKIPYILFIGQLSYDTTKESLLQHFQTELADDGFDVNEQTCQIRLLTDPKTKKSRGMAFVELSTPELMHACLKLHKTMLEGRRINVEKSAGGGKHSEQRKEKLKTFRTQQEEYIESMVAKMIDEYKQKGEIQDGELDEGVIALCQR 258          
BLAST of EWM25417.1 vs. NCBI_GenBank
Match: gi|1210517343|dbj|GAX23600.1| (nucleolar protein 6 [Fistulifera solaris])

HSP 1 Score: 107.842 bits (268), Expect = 1.434e-23
Identity = 72/213 (33.80%), Postives = 112/213 (52.58%), Query Frame = 0
Query:   77 SLNAKQRRLLKRAQERAAGQAGNNIPPKLL-------------SNNGAILEEQSSDVSSKKRRRIHENPHIVFVGQLSFDTSAHELREHL------ENGGVT---GPIHVRLLTEKGSNKSRGQAFVTLIDAENQYKCLSLHHSKLKNRVINVERSC-GGRNLDKRKGKLQALRREQREAIETTCDRIVKEKTEAGQLLPGELDEQAVKLLTR 266
            S+ AK RR  KR  E  A +       +LL             +NN    +++ +D +   +R+I   P+I+F+GQLS+DT+   L +H       ++ G         +RLLT+  + KSRG AFV L   E  + CL LH + L+ R INVE+S  GG++ ++RK KL+  R +Q E IE+   +++ E  + G++  GELDE  + L  R
Sbjct:   64 SMKAKDRRSAKRKAEAIALEKSGCSADELLAWYKEQKDDDRPETNNSR--KQKKADATQTDKRKI---PYILFIGQLSYDTTKESLLQHFQSELADDDDGFDINEQTCQIRLLTDAKTKKSRGMAFVELSTPELMHACLKLHKTMLEGRRINVEKSAGGGKHSEQRKEKLKTFRTQQEEYIESMVTKMIDEYKQKGEIQDGELDEGVIALCQR 271          
BLAST of EWM25417.1 vs. NCBI_GenBank
Match: gi|224001980|ref|XP_002290662.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220974084|gb|EED92414.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 108.612 bits (270), Expect = 4.288e-23
Identity = 71/197 (36.04%), Postives = 98/197 (49.75%), Query Frame = 0
Query:   77 SLNAKQRRLLKRAQERAAGQAGNNIPPKLLSNNGAILEEQSSDVSSKKRRRIHENPHIVFVGQLSFDTSAHELREHLENGGVTGP-------IHVRLLTEKGSNKSRGQAFVTLIDAENQYKCLSLHHSKLKNRVINVERSCGGRNLDKRKGKLQALRREQREAIETTCDRIVKEKTEAGQLLPGELDEQAVKLLTR 266
            ++NAK+RR  KR  E  A +       +LL     I      D  +KK       P+IVF+GQLS+ T+   + +H  N    GP       + +RLLT+  + KSRG AFV L   E  Y+CL +H + L  R INVER+ GG     +K K+ + R EQ   I  T D I+ E  + G +   ELDE  + L  R
Sbjct:  144 AMNAKERRSAKRKAEAIATEESGCPANELLEWYDTISPPNKEDKDAKKI------PYIVFIGQLSYSTTTDMIYDHFHN--TLGPDVITKESVKIRLLTDSKTKKSRGMAFVELDSPEAMYECLRMHLTHLDGRRINVERTAGG-GAALKKSKITSYREEQTTYISQTMDHILSEYMKKGDIDEDELDEGVIALCKR 331          
BLAST of EWM25417.1 vs. NCBI_GenBank
Match: gi|219111927|ref|XP_002177715.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217410600|gb|EEC50529.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 105.531 bits (262), Expect = 7.393e-23
Identity = 60/142 (42.25%), Postives = 89/142 (62.68%), Query Frame = 0
Query:  132 PHIVFVGQLSFDTSAHELREHL------ENGGVTGPIHVRLLTEKGSNKSRGQAFVTLIDAENQYKCLSLHHSKLKNRVINVERSCGGR-NLDKRKGKLQALRREQREAIETTCDRIVKEKTEAGQLLPGELDEQAVKLLTR 266
            P+IVFVGQLS+DT+   L +H+      E+      + +RLLT+  + KSRG AFV + D E  Y CL LHH+ L+ R +NVER+ GGR + D+RK K+Q  R+EQ +   T  D +++E  ++G++ P E+D+  V L  R
Sbjct:  142 PYIVFVGQLSYDTTKDSLFQHIRKEIGTEHKVNPSTVKIRLLTDAKTKKSRGMAFVEVPDPEMLYACLKLHHTFLEGRRLNVERTAGGRKSSDQRKTKIQQRRQEQEQYFGTVVDNMLQEHYKSGEIKPHEIDDGVVGLCKR 283          
BLAST of EWM25417.1 vs. NCBI_GenBank
Match: gi|397642402|gb|EJK75211.1| (hypothetical protein THAOC_03075 [Thalassiosira oceanica])

HSP 1 Score: 98.2117 bits (243), Expect = 1.900e-19
Identity = 70/199 (35.18%), Postives = 104/199 (52.26%), Query Frame = 0
Query:   78 LNAKQRRLLKRAQERAAGQ-----AGNNIPPKLLSNNGAILEEQSSDVSSKKRRRIHENPHIVFVGQLSFDTSAHELREHLEN----GGVTG-PIHVRLLTEKGSNKSRGQAFVTLIDAENQYKCLSLHHSKLKNRVINVERSCGGRNLDKRKGKLQALRREQREAIETTCDRIVKEKTEAGQLLPGELDEQAVKLLTR 266
            LN+K+RR  KR  E  A +      G++   +LL    A  E      + K+  ++  N   VF+GQL+F+T+   L  H+++      +T     +RLLT+  + +SRG AFVTL   E +Y+CL LH + L  R INVE S GG  ++ RK K+   R  Q + I  T DRI++     G++   ELDE  + L  R
Sbjct:  172 LNSKERRSAKRKAEAIASEQLQPDGGSSSTEELL----AWYETVRPTSTEKESGKVSYN---VFIGQLAFNTTKEGLFGHIQSTLGKDLITAESCQIRLLTDTKTKRSRGMAFVTLSSGELRYECLKLHLTYLDGRRINVELSPGG-GIEARKSKISTFRESQAKYISATVDRIIQSFVSQGEIEADELDEGVLGLCKR 362          
BLAST of EWM25417.1 vs. NCBI_GenBank
Match: gi|1072229977|gb|OEU14711.1| (hypothetical protein FRACYDRAFT_150968, partial [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 93.2041 bits (230), Expect = 1.919e-18
Identity = 55/145 (37.93%), Postives = 82/145 (56.55%), Query Frame = 0
Query:  131 NPHIVFVGQLSFDTSAHELREHLENG-GVTGPI-----HVRLLTEKGSNKSRGQAFVTLI--DAENQYKCLSLHHSKLKNRVINVERSCGG-RNLDKRKGKLQALRREQREAIETTCDRIVKEKTEAGQLLPGELDEQAVKLLTR 266
            +P I FVGQLS++T+  +L  H+ +  G   P+      +R+LT+  + +SRG AFV +   D E  Y  L+LH + LK R IN+ERS GG ++ + RK KL   R+EQ        ++I  E  + G+L   ELDE  + +L R
Sbjct:  141 DPLIAFVGQLSYETTIDDLFGHIHSLLGDDYPVSKEMVKIRILTDAKTQRSRGMAFVEITNGDPEFLYALLTLHQTMLKGRRINIERSAGGKKHSEARKTKLDHYRKEQESHFAEVVEKIFSEYKKTGELRENELDEGVITVLKR 285          
BLAST of EWM25417.1 vs. NCBI_GenBank
Match: gi|1214683777|gb|OWZ01507.1| (hypothetical protein PHMEG_00027084 [Phytophthora megakarya])

HSP 1 Score: 92.8189 bits (229), Expect = 4.029e-18
Identity = 79/242 (32.64%), Postives = 116/242 (47.93%), Query Frame = 0
Query:    8 SMNAKERRLLRRAQERAKAASGASSIP-------------ATSNPPGVVLSKNGKKNVTR----KPETSEEPNPQVDTAPSAQDPGSLNAKQRRLLKRAQERAAGQAGNNIPPKLLSNNGAILEEQSSDVSSKKRRRIHENPHIVFVGQLSFDTSAHELREHLENGGVTGPIHVRLLTEKGSNKSRGQAFVTLIDAENQYKCLSLHHSKLKNRVINVE--RSCGGRNLDKRKGKLQALRREQ 230
            ++NAK+RR LRR  E      G  +I              A        L+   ++ + R    K E ++ PN +V  +   Q+   LNA+QRRLLKR  +R A       PPK      A  EE S     K R+ IH     +FVGQL F  +   +R+H    G    I +R+LT+K + + +G AF+ + D++     LS HH+ L+ R INVE   S GG   + R+ K+  LR++Q
Sbjct:    9 TLNAKQRRKLRREHE----LEGCVAIKEEVKEEVVKVEPIAQQVEAATTLNAKERRRLARLAQQKTEVADAPNTEVAASTDGQE---LNAQQRRLLKRQAKRQAAGVEEKRPPKKHKKQAATGEEDSP----KNRKSIHLT---LFVGQLPFRATEASIRKHFAEAG---EIKLRMLTDKKTKRFKGTAFIEVKDSKALGAALSRHHTLLQGRRINVELTASGGGNKSENRRTKIDLLRKKQ 233          
The following BLAST results are available for this feature:
BLAST of EWM25417.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585107178|gb|EWM25417.1|0.000e+0100.00RNA binding protein [Nannochloropsis gaditana][more]
gi|299471246|emb|CBN79101.2|7.974e-3050.72conserved unknown protein (Partial), partial [Ecto... [more]
gi|676391625|ref|XP_009039090.1|4.454e-2738.50hypothetical protein AURANDRAFT_65840 [Aureococcus... [more]
gi|1210526214|dbj|GAX15132.1|7.233e-2430.55nucleolar protein 6 [Fistulifera solaris][more]
gi|1210517343|dbj|GAX23600.1|1.434e-2333.80nucleolar protein 6 [Fistulifera solaris][more]
gi|224001980|ref|XP_002290662.1|4.288e-2336.04predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|219111927|ref|XP_002177715.1|7.393e-2342.25predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|397642402|gb|EJK75211.1|1.900e-1935.18hypothetical protein THAOC_03075 [Thalassiosira oc... [more]
gi|1072229977|gb|OEU14711.1|1.919e-1837.93hypothetical protein FRACYDRAFT_150968, partial [F... [more]
gi|1214683777|gb|OWZ01507.1|4.029e-1832.64hypothetical protein PHMEG_00027084 [Phytophthora ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5231rna5231Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications