rna5222, rna5222 (mRNA) Nannochloropsis gaditana

Overview
Namerna5222
Unique Namerna5222
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1529
Alignment locationCM002465.1:465367..466934 +

Link to JBrowse

Properties
Property NameValue
Productprotein of unknown function DUF4149
Orig transcript idgnl|cribi|Naga_100005g9.6725.mrna
Orig protein idgnl|cribi|Naga_100005g9.6725
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:465367..466934 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100005g9gene5042Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5222rna5222-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25431.1cds5209Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5222 ID=rna5222|Name=rna5222|organism=Nannochloropsis gaditana|type=mRNA|length=1529bp
GGCGAGTAAGAGATGACGTTGATATCGCCGCCTGAGCGACTGGAACCGGG
CCCCGGCCACAGGCTCTTTCGCATGTGGCATCTTTCAGCACAGCCTTTCC
TCAAGCGGACGCGCAAATTTCTTCTTTTCCTTTCTTGTCTGTCCACAAAT
GGCGCTCCTGGGACGCACAGCACCGTCGCTTGAAGATCTGGCCACGCTTG
CCACTTACCTGTCCAACGAGGTGCGAAACAAGTTTCACGCCAGAATATAT
GGGATGATCACATTTCTTGTCAAATGCTCAGGGGATGCCCAACTACGAGC
GGCGCTGGGGCTCGCAGGAAGGAGCAATGCCGGGGATAGCAAGTGGGGGT
GAGGCTATAAGGAGAAGCCATTCCAAGCACTTGAATTGGTGAGCGCGGAG
AAGTTGAGCCATACGCAATCCCGGCCACAGGCAAGGACGGTGATGAGCTG
GTACAAGGACTGGACTACATTTCGGACCTTGAAACGGCAGCGCACGTAAA
AAGGGGCATTGGGAACAGTCGTAGATAGCTTCGACGGAACATCTTTGCAC
CCGGCGGCACTGGCAGGGTCCGGTGGCGTGGTTCAAGCATTGCTTGACAT
GGGCGGGAGCCAACGTAAGAAAAACCGATGAATCTCTGCACTCGAGTAGC
AATATGGCTGTCATTCTCGCCGGGGATGCTGCCCATTGAGTGCTGCATAG
GAAGAAAGACGTAAGATGTGACGTTGCGTTGCGGACCAAGATGATGGTCT
CTCAGTGCAGGCCCTCCCCGCACGACCGCGGCATAGACTTTGCGTCAACG
AGCGTGATGAGAAGTGGAATATCCCTTTTTAAGAAGCATGTCGCATGAGA
GTGCTTGACGCGGTAAAGATATGCGGTCATGAGAGCTTCAAAGAAGGGCC
CACCAAAGAGGGACTCTGCCTACTCCGCGTCGTATGCTCTTCTCCTGACT
ATCCTCTTCGGGCCTGGGGAGGCAGCGGAAGTTACAAAACGGCGCAGACA
TAAAGAATATAGGGTGTGCACGCGCTTGGATCCGTTTTGTCGGCCACAAG
CACGGTCTGCTTGGAAGGCGTCGCTTACGTCGACGGGAAGTCGAGGGTAC
ACAAAGCTCGGATACTGTGTTAGCAAAGAGTGTCACAAGGTAGCAGGATG
GCGTCTGTTGCAGAAGTCGAACTTGGCAAGTCAGTATGGCATTTTGTAAG
AGAATGCATGACAAAATGGAGCCAGCTAGCTTTGATACTCTCTCCTCGTG
GTACTTGCTGCTATACAGAACACGTTTTGGTCATCAATTTGAACTGATGC
TTCTCAAGATTCAGCAGAAATATGATACACACTTTCGTGCAACCCTTCGC
TCTCCTCGCCCTCCTCGTCAATTGTGGGGTTATTTGACATGAGAGAGACA
CCCTAAGTTTTCACCAAAATTACTTTCTCCTGAGGCAAGATTCGCCTGTC
AGCCCATTGTCTGATTGCTTTTTCCCAAGTACTCCGTGCTCAACGCAACC
GGAAATCCTGGCTAACGTGGGCCTTGCAG
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protein sequence of rna5222

>rna5222-protein ID=rna5222-protein|Name=rna5222|organism=Nannochloropsis gaditana|type=polypeptide|length=266bp
MKKPCSVLLLVSTAALLLPLHEAFKIPIGARLARTSSSSTLKRWPVPPSS
NLVQGAGVVSQVLRASDAKGAEGDSAGVQPWIEPAFHNKLSVRILAVLAG
ISIAMKNSGMALPKSAATYIHLLMFGANFGSVMYTTFVLGLVMIKHLPRQ
TFGRLQSKLFPIYFAWSALALALQLLTGKTLGLPAKAMRWLAASLAAALI
NSLFLEPASTKVMFQRYALEKQNRREETEYKELAKRFGALHGASSLVNLV
TVVGGFVHAYYLSLML
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mRNA from alignment at CM002465.1:465367..466934+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5222 ID=rna5222|Name=rna5222|organism=Nannochloropsis gaditana|type=mRNA|length=1568bp|location=Sequence derived from alignment at CM002465.1:465367..466934+ (Nannochloropsis gaditana)
GACAGGTAAGTGGCAAGCGTGGCCAGATCTTCAAGCGACGGTGCTGTGCG
TCCCAGGAGCGCCATTTGTGGACagacaagaaaggaaaagaagaaatttG
CGCGTCCGCTTGAGGAAAGGCTGTGCTGAAAGATGCCACATGCGAAAGAG
CCTGTGGCCGGGGCCCGGTTCCAGTCGCTCAGGCGGCGATATCAACGTCA
TCTCTTACTCGCCTGGCCGCATTGCGCTTGACTCAGTTGGGTCTCACAGC
ATATCGACGTTCATTCGTACTGTTCTGTGGTCAAGAGAAATAAGATTGTC
ATCGTCGCTCGCCCTCTAACTATCTTTCTCTCACCTGTGTTGTACCCCTC
CGTAGCACATTACCATGAAGAAACCTTGctctgtcctccttctcgtcagC
ACGGCAGCTTTGTTGCTGCCCCTGCACGAAGCCTTCAAAATACCCATTGG
TGCACGCCTAGCCCGgacatcctcgtcctcaacATTAAAGCGGTGGCCAG
TTCCTCCATCCAGCAACCTGGTGCAGGGTGCTGGCGTCGTGTCGCAGGTC
TTACGCGCCTCCGACGCCAagggagcagagggggaCAGCGCTGGAGTCCA
ACCGTGGATTGAGCCCGCCTTCCACAATAAATTGAGCGTGCGAATCCTGG
CGGTGCTTGCAGGTATCTCCATCGCAATGAAGAACTCCGGCATGGCCCTT
CCCAAGTCGGCAGCCACGTACATTCACCTTCTCATGTTCGGCGCCAATTT
CGGGAGTGTCATGTACACCACTTTCGTCCTGGGGTTGGTTATGATCAAGC
ACTTGCCCCGACAGACGTTTGGGAGACTTCAGAGCAAGGTGAGCGGGAAA
GTGTCGGGATGCGAACATTGGTTGTCCTCTCTCTGTCCCTGTCTGGGCGA
GTAAGGCGCTGCCTGCGAGGCACAAATTACAACTATTGCGTGATGGCGCC
CACAGCAGCATCACGCGAGAATGACCGCCTCACTCAcggctttcttctcc
ctgctATCCAGCTCTTCCCCATCTATTTCGCCTGGTCCGCTTTGGCTTTG
GCTCTGCAGCTCCTGACCGGCAAGACCCTGGGCCTGcccgccaaggccat
gcGCTGGCTCGcagcctccctggccgccgccCTCATCAACTCACTCTTCT
TGGAGCCGGCTTCGACTAAGGTCATGTTCCAGCGGTACGCTCTGGAGAAG
CAGaacaggcgggaggagaccGAGTACAAGGAGCTCGCCAAGCGCTTCGG
GGCCCTCCACGGCGCATCCTCCTTGGTCAACTTGGtcacggtggtggggg
gcTTCGTCCACGCTTACTATCTAAGCCTAATGCTCTAGAGCGGCCGGGCG
ACGGCGGTTGAAAGGGGATGGGCGTGGCGtcaggaaagaaaaacaaaACG
TACTCGTCTCGTCGGCGTAGGAGCCTGAAATGATTTTTTGTTCCGTCATT
ACTCTCCCAGGGCCGGGCTCCAGAAGCCTCGGGCCATTTCTCCCGGACTC
TTTTGTCTCTCTTTCATGGCTCCTATCAATCAGCATCTCAATAAAAATCA
TGCGAGTGTggtcctgtc
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Coding sequence (CDS) from alignment at CM002465.1:465367..466934+

>rna5222 ID=rna5222|Name=rna5222|organism=Nannochloropsis gaditana|type=CDS|length=1602bp|location=Sequence derived from alignment at CM002465.1:465367..466934+ (Nannochloropsis gaditana)
ATGAAGAAACCTTGctctgtcctccttctcgtcagCACGGCAGCTTTGTT
GCTGCCCCTGCACGAAGCCTTCAAAATACCCATTGGTGCACGCCTAGCCC
GgacatcctcgtcctcaacATTAAAGCGGTGGCCAGTTCCTCCATCCAGC
AACCTGGTGCAGGGTGCTGGCGTCGTGTCGCAGGTCTTACGCGCCTCCGA
CGCCAagggagcagagggggaCAGCGCTGGAGTCCAACCGTGGATTGAGC
CCGCCTTCCACAATAAATTGAGCGTGCGAATCCTGGCGGTGCTTGCAGGT
ATCTCCATCGCAATGAAGAACTCCGGCATGGCCCTTCCCAAGTCGGCAGC
CACGTACATTCACCTTCTCATGTTCGGCGCCAATTTCGGGAGTGTCATGT
ACACCACTTTCGTCCTGGGGTTGGTTATGATCAAGCACTTGCCCCGACAG
ACGTTTGGGAGACTTCAGAGCAAGCTCTTCCCCATCTATTTCGCCTGGTC
CGCTTTGGCTTTGGCTCTGCAGCTCCTGACCGGCAAGACCCTGGGCCTGc
ccgccaaggccatgcGCTGGCTCGcagcctccctggccgccgccCTCATC
AACTCACTCTTCTTGGAGCCGGCTTCGACTAAGGTCATGTTCCAGCGGTA
CGCTCTGGAGAAGCAGaacaggcgggaggagaccGAGTACAAGGAGCTCG
CCAAGCGCTTCGGGGCCCTCCACGGCGCATCCTCCTTGGTCAACTTGGtc
acggtggtggggggcTTCGTCCACGCTTACTATCTAAGCCTAATGCTCTA
GATGAAGAAACCTTGctctgtcctccttctcgtcagCACGGCAGCTTTGT
TGCTGCCCCTGCACGAAGCCTTCAAAATACCCATTGGTGCACGCCTAGCC
CGgacatcctcgtcctcaacATTAAAGCGGTGGCCAGTTCCTCCATCCAG
CAACCTGGTGCAGGGTGCTGGCGTCGTGTCGCAGGTCTTACGCGCCTCCG
ACGCCAagggagcagagggggaCAGCGCTGGAGTCCAACCGTGGATTGAG
CCCGCCTTCCACAATAAATTGAGCGTGCGAATCCTGGCGGTGCTTGCAGG
TATCTCCATCGCAATGAAGAACTCCGGCATGGCCCTTCCCAAGTCGGCAG
CCACGTACATTCACCTTCTCATGTTCGGCGCCAATTTCGGGAGTGTCATG
TACACCACTTTCGTCCTGGGGTTGGTTATGATCAAGCACTTGCCCCGACA
GACGTTTGGGAGACTTCAGAGCAAGCTCTTCCCCATCTATTTCGCCTGGT
CCGCTTTGGCTTTGGCTCTGCAGCTCCTGACCGGCAAGACCCTGGGCCTG
cccgccaaggccatgcGCTGGCTCGcagcctccctggccgccgccCTCAT
CAACTCACTCTTCTTGGAGCCGGCTTCGACTAAGGTCATGTTCCAGCGGT
ACGCTCTGGAGAAGCAGaacaggcgggaggagaccGAGTACAAGGAGCTC
GCCAAGCGCTTCGGGGCCCTCCACGGCGCATCCTCCTTGGTCAACTTGGt
cacggtggtggggggcTTCGTCCACGCTTACTATCTAAGCCTAATGCTCT
AG
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Synonyms
Publications