EWM25431.1, cds5209 (CDS) Nannochloropsis gaditana

Overview
NameEWM25431.1
Unique Namecds5209
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002465.1:465731..466204 +
Alignment locationCM002465.1:466378..466704 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM25431.1
Productprotein of unknown function DUF4149
Orig transcript idgnl|cribi|Naga_100005g9.6725.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:465731..466204 +
CM002465.1supercontigCM002465.1:466378..466704 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR025423DUF4149
Homology
BLAST of EWM25431.1 vs. NCBI_GenBank
Match: gi|585107192|gb|EWM25431.1| (protein of unknown function DUF4149 [Nannochloropsis gaditana])

HSP 1 Score: 533.872 bits (1374), Expect = 0.000e+0
Identity = 266/266 (100.00%), Postives = 266/266 (100.00%), Query Frame = 0
Query:    1 MKKPCSVLLLVSTAALLLPLHEAFKIPIGARLARTSSSSTLKRWPVPPSSNLVQGAGVVSQVLRASDAKGAEGDSAGVQPWIEPAFHNKLSVRILAVLAGISIAMKNSGMALPKSAATYIHLLMFGANFGSVMYTTFVLGLVMIKHLPRQTFGRLQSKLFPIYFAWSALALALQLLTGKTLGLPAKAMRWLAASLAAALINSLFLEPASTKVMFQRYALEKQNRREETEYKELAKRFGALHGASSLVNLVTVVGGFVHAYYLSLML 266
            MKKPCSVLLLVSTAALLLPLHEAFKIPIGARLARTSSSSTLKRWPVPPSSNLVQGAGVVSQVLRASDAKGAEGDSAGVQPWIEPAFHNKLSVRILAVLAGISIAMKNSGMALPKSAATYIHLLMFGANFGSVMYTTFVLGLVMIKHLPRQTFGRLQSKLFPIYFAWSALALALQLLTGKTLGLPAKAMRWLAASLAAALINSLFLEPASTKVMFQRYALEKQNRREETEYKELAKRFGALHGASSLVNLVTVVGGFVHAYYLSLML
Sbjct:    1 MKKPCSVLLLVSTAALLLPLHEAFKIPIGARLARTSSSSTLKRWPVPPSSNLVQGAGVVSQVLRASDAKGAEGDSAGVQPWIEPAFHNKLSVRILAVLAGISIAMKNSGMALPKSAATYIHLLMFGANFGSVMYTTFVLGLVMIKHLPRQTFGRLQSKLFPIYFAWSALALALQLLTGKTLGLPAKAMRWLAASLAAALINSLFLEPASTKVMFQRYALEKQNRREETEYKELAKRFGALHGASSLVNLVTVVGGFVHAYYLSLML 266          
BLAST of EWM25431.1 vs. NCBI_GenBank
Match: gi|219127675|ref|XP_002184056.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217404287|gb|EEC44234.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 176.022 bits (445), Expect = 8.372e-51
Identity = 90/188 (47.87%), Postives = 120/188 (63.83%), Query Frame = 0
Query:   78 VQPWIEPAFHNKLSVRILAVLAGISIA-MKNSGMALPKSAATYIHLLMFGANFGSVMYTTFVLGLVMIKHLPRQTFGRLQSKLFPIYFAWSALALALQLLTGKTLGLPA-KAMRWLAASLAAALINSLFLEPASTKVMFQRYALEKQNRREETEYKELAKRFGALHGASSLVNLVTVVGGFVHAYYLS 263
             + W +   HN  + R LA+L  +++A  K+S   LP  A   IH+L F   FG+V YTTFVLG+ M K+LPRQTFG+LQ+KLFP YFA S++AL LQL T K + + A K+M  L  +LA   +N  +LEP ST  M +RY+LE +  +E  EYK L  +FG  HG SSL NLV + GG  HA Y++
Sbjct:   56 TEEWTKKRLHNTAAFRSLAILGAVAVAGTKSSAQFLPAQATASIHVLSFATWFGTVAYTTFVLGITMFKNLPRQTFGKLQAKLFPTYFALSSVALVLQLATAKAMPVFASKSMTALGVALAMTALNQFYLEPVSTINMMERYSLESRGEKESNEYKRLKAQFGKFHGMSSLTNLVALCGGVAHAIYMA 243          
BLAST of EWM25431.1 vs. NCBI_GenBank
Match: gi|873231225|emb|CEM08876.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 160.229 bits (404), Expect = 3.818e-44
Identity = 87/189 (46.03%), Postives = 120/189 (63.49%), Query Frame = 0
Query:   79 QPWIEPAFHNKLSVRILAVLAGISIAMKNSGMALPKSAATYIHLLMFGANFGSVMYTTFVLGLVMIKHLPRQTFGRLQSKLFPIYFAWSALALALQLLTGKTLGLPAKAMRW-LAASLAAALINSLFLEPASTKVMFQRYALEKQNRREETEYKELAKRFGALHGASSLVNLVTVVGGFVHAYYLSLML 266
            Q W+ PA HN+ SVR+LA+L+   +    S + + K    ++HLL +    GSV+YTTFV G+ M ++LPR+TFGRLQSKLFP+YF      L + L TG    LP +AM   LA +L   L N   LEP ST++MF+RY +E Q R+++ EYK LAK FG  HG SSL NL+ + GG  H + L+ ++
Sbjct:  103 QVWVAPAVHNRNSVRLLALLS-TLLLASGSTVFVSKQLTLFVHLLAYATWLGSVIYTTFVAGITMFRNLPRKTFGRLQSKLFPLYFQLCTGMLIVLLTTGGASVLPNRAMMANLAVALVMTLANLFVLEPKSTEIMFKRYEMEDQGRKDDPEYKALAKGFGKFHGLSSLTNLIALCGGVAHGWTLASLI 290          
BLAST of EWM25431.1 vs. NCBI_GenBank
Match: gi|299117062|emb|CBN73833.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 155.221 bits (391), Expect = 9.613e-43
Identity = 81/191 (42.41%), Postives = 122/191 (63.87%), Query Frame = 0
Query:   74 DSAGVQPWIEPAFHNKLSVRILAVLAGISIAMKNSGMALPKSAATYIHLLMFGANFGSVMYTTFVLGLVMIKHLPRQTFGRLQSKLFPIYFAWSALA-LALQLLTGKTLGLPAKAMRWLAASLAAALINSLFLEPASTKVMFQRYALEKQNRREETEYKELAKRFGALHGASSLVNLVTVVGGFVHAYYLS 263
            D +  Q +I+PA HNK  VR+ A+L    +A K + M +P + A  +H++   A  GS ++TTF  G+ M+++LPRQTFG+LQSKLFP+YF ++ ++ LA+ ++ G    L  +A   L  SL + L+N + LEP ST +M +RY LE   +++  EYKEL K FG  HG SS  NL  ++G FV+A+ L+
Sbjct:   61 DPSAQQAFIQPAIHNKNPVRVAAILTAAGLASKGA-MLVPGNLAKMVHMVALNAWMGSTLWTTFFAGITMMRNLPRQTFGKLQSKLFPLYFQFNFVSILAIYIIRG--CPLRTRAGVTLLVSLFSTLLNLVLLEPKSTSIMLERYKLEDDKKKDSDEYKELGKTFGKFHGMSSFANLGALIGSFVYAWELA 248          
BLAST of EWM25431.1 vs. NCBI_GenBank
Match: gi|1210515006|dbj|GAX25969.1| (hypothetical protein FisN_4Hh547 [Fistulifera solaris])

HSP 1 Score: 151.369 bits (381), Expect = 1.942e-41
Identity = 97/238 (40.76%), Postives = 129/238 (54.20%), Query Frame = 0
Query:   37 SSSTLKRWPVPPSSNLVQGAGVVSQVLRASDAKGAEGDSAGVQPWIEPAFHNKLSVRILAVLAGI---SIAMKNSGMALPKSAATYIHLLMFGANFGSVMYTTFVLGLVMIKHLPRQTFGRLQSKLFPIYFAWSALALALQLLTGKTL-GLPAKAMRWLAASLAAA----LINSLFLEPASTKVMFQRYALEKQNRREETEYKELAKRFGALHGASSLVNLVTVVGGFVHAYYLSLML 266
            S + L  +P   SS  V G G++S  + A  +          + W +P  HN  + R +A+L+ +     + K+    LP      +H + F   FG+V YTTFV G+ M K+LPRQTFG+LQ+KLFP YFA S+  LALQL+T K+L  +  KA    A +L  A    LIN  FLEP ST  M +RY LE +  +E   YK L   FG  HG SSL NL+ +  G  HA YLS  L
Sbjct:    6 SGNMLSPFPAHRSSTQV-GGGLLSPRMSAVSS----------EEWTKPRLHNTATFRTIALLSALLAAGFSSKSPLKLLPAQVLGSVHTISFATWFGTVAYTTFVAGITMFKNLPRQTFGKLQAKLFPKYFALSSFTLALQLITLKSLKAMTGKAAHSSAKALGVALLMTLINQFFLEPKSTSNMMERYELEDKGEQESDRYKTLKANFGKFHGMSSLTNLIGLCAGVAHAVYLSATL 232          
BLAST of EWM25431.1 vs. NCBI_GenBank
Match: gi|1210516923|dbj|GAX24412.1| (hypothetical protein FisN_4Lh547 [Fistulifera solaris])

HSP 1 Score: 149.828 bits (377), Expect = 4.082e-41
Identity = 87/196 (44.39%), Postives = 114/196 (58.16%), Query Frame = 0
Query:   79 QPWIEPAFHNKLSVRILAVLAGI---SIAMKNSGMALPKSAATYIHLLMFGANFGSVMYTTFVLGLVMIKHLPRQTFGRLQSKLFPIYFAWSALALALQLLTGKTL-GLPAKAMRWLAASLAAA----LINSLFLEPASTKVMFQRYALEKQNRREETEYKELAKRFGALHGASSLVNLVTVVGGFVHAYYLSLML 266
            + W +P  HN  + R +A+L+ +     + K+    LP      IH + F   FG+V YTTFV G+ M K+LPRQTFG+LQ+KLFP YFA S+  LALQL+T K+L  +  KA    A +L  A    LIN  +LEP ST  M +RY LE +  +E   YK L   FG  HG SSL NL+ +  G VHA +LS  L
Sbjct:   18 EEWTKPRLHNTATFRTIALLSALLAAGFSSKSPLKLLPAQVLGSIHTISFATWFGTVAYTTFVAGITMFKNLPRQTFGKLQAKLFPKYFALSSFTLALQLITLKSLKAMTGKAAHSSAKALGVALLMTLINQFYLEPKSTSNMMERYELEDKGEQESDRYKTLKASFGKFHGMSSLTNLIGLCAGVVHAVFLSATL 213          
BLAST of EWM25431.1 vs. NCBI_GenBank
Match: gi|223996263|ref|XP_002287805.1| (predicted protein, partial [Thalassiosira pseudonana CCMP1335] >gi|220976921|gb|EED95248.1| predicted protein, partial [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 145.591 bits (366), Expect = 2.821e-40
Identity = 73/142 (51.41%), Postives = 94/142 (66.20%), Query Frame = 0
Query:  120 IHLLMFGANFGSVMYTTFVLGLVMIKHLPRQTFGRLQSKLFPIYFAWSALALALQLLTGKTLG--LPAKAMRWLAASLAAALINSLFLEPASTKVMFQRYALEKQNRREETEYKELAKRFGALHGASSLVNLVTVVGGFVHA 259
            +HLL F   FG+V+YTTFV G+ M K+LPR+ FG LQSKLFP+YF      + +Q+LT  ++   L   +   L  S AA L+N L+LEP ST+VMF RY LE   +R+  EY +LAK FGA HG SSL NLV ++GG VH 
Sbjct:    2 LHLLSFSTWFGTVVYTTFVAGITMFKNLPRRVFGSLQSKLFPLYFQLCTSMIGIQILTLTSMPDILSKVSEVSLGISFAATLLNLLYLEPTSTQVMFDRYDLEDDGKRDSDEYGKLAKSFGAYHGMSSLANLVALIGGIVHG 143          
BLAST of EWM25431.1 vs. NCBI_GenBank
Match: gi|552820016|ref|XP_005845520.1| (hypothetical protein CHLNCDRAFT_136618 [Chlorella variabilis] >gi|307105168|gb|EFN53418.1| hypothetical protein CHLNCDRAFT_136618 [Chlorella variabilis])

HSP 1 Score: 140.198 bits (352), Expect = 3.170e-37
Identity = 81/185 (43.78%), Postives = 116/185 (62.70%), Query Frame = 0
Query:   82 IEPAFHNKLSVRILAVLAGISIAMKNSGMALPKSAATYIHLLMFGANFGSVMYTTFVLGLVMIKHLPRQTFGRLQSKLFPIYFAWSALALALQL--LTGKTLGLPAKAMRWLAASLAAALINSLFLEPASTKVMFQRYALEK-QNRREETEYKELAKRFGALHGASSLVNLVTVVGGFVHAYYLS 263
            +EP+  NK  VR+L + A ++ A + +   LP +   ++HLL +G   GS+++T+FV G+ MI+HLPRQTFGRLQ++LFP YFA SA   A+QL  L       PAK +  +   LA +L++ L +EP +TKVMFQRY LE     R+E     L K FG  HG SSL+NL T++    H ++L+
Sbjct:   36 LEPSTSNKRWVRLLVLSATVAAAARGTAY-LPTAGVAFVHLLAYGIWLGSLVWTSFVAGITMIRHLPRQTFGRLQARLFPKYFALSAACTAIQLGVLLFAAAAPPAKQLVLVGLGLATSLLSLLVVEPITTKVMFQRYELESAAGPRDEAAITALKKSFGNWHGISSLINLGTLITAIGHGWWLA 219          
BLAST of EWM25431.1 vs. NCBI_GenBank
Match: gi|545355028|ref|XP_005643334.1| (hypothetical protein COCSUDRAFT_60092 [Coccomyxa subellipsoidea C-169] >gi|384245295|gb|EIE18790.1| hypothetical protein COCSUDRAFT_60092 [Coccomyxa subellipsoidea C-169])

HSP 1 Score: 132.88 bits (333), Expect = 3.768e-34
Identity = 76/189 (40.21%), Postives = 116/189 (61.38%), Query Frame = 0
Query:   80 PWIEPAFHNKLSVRILAVLAGISIAMKNSGMALPKSAATYIHLLMFGANFGSVMYTTFVLGLVMIKHLPRQTFGRLQSKLFPIYFAWSALALALQLLTGKTLGLPAKAMRWLAASLAAALI----NSLFLEPASTKVMFQRYALEKQ-NRREETEYKELAKRFGALHGASSLVNLVTVVGGFVHAYYLS 263
            P +EP+  NK  VR+  V A + +A +++   LP + A +IHL+ +G   GS ++TTF+ G+ M K+LPRQTFG+LQ+KLFP YFA +  A  LQ+ T    G+P    R  + +L  A +    N L++EP +T +MF+RY LE     ++  + K+L K+FG  HG SSL+NLV +     H ++L+
Sbjct:   45 PMLEPSAFNKNWVRLAWVSAALVVAARSTEF-LPVNVAVFIHLMAWGLWLGSNIWTTFIAGITMFKNLPRQTFGKLQAKLFPQYFAVAIAAGVLQIGT-LAFGVPGGIARTQSITLGVAFVTSLANWLYVEPVATNLMFERYNLENAPGEKDSAKIKQLYKQFGKFHGISSLLNLVALGAVISHGWWLA 231          
BLAST of EWM25431.1 vs. NCBI_GenBank
Match: gi|1004140274|gb|KXZ48274.1| (hypothetical protein GPECTOR_29g51 [Gonium pectorale])

HSP 1 Score: 117.857 bits (294), Expect = 6.234e-28
Identity = 74/193 (38.34%), Postives = 110/193 (56.99%), Query Frame = 0
Query:   82 IEPAFHNKLSVRILAVLAGISIAMKNSGMALPKSAATYIHLLMFGANFGSVMYTTFVLGLVMIKHLPRQTFGRLQSKLFPIYFAWSA----LALA-LQLLTGKTLGLPAKAMRWLAASLAAALINSLFLEPASTKVMFQRYALEKQNRREETEYKELA---KRFGALHGASSLVNLVTVVGGFVHAYYLSLML 266
            ++P+  N   VR L+VL G   A+  +   LP +   ++H+  +    G+ ++ TF +G+ M K+LPRQTFG+LQ+K+FP YFA +A    LAL  L L          +A+  LA SLA  L N L+LEP  T +MFQRY +E    + + +   +A   K+FG  HG SSLVNLV+      H ++L+ +L
Sbjct:   95 LKPSVVNTPVVRALSVL-GAVAAVSATSAVLPSAFGAFLHVTAYAVLLGAQLWNTFFVGITMFKNLPRQTFGKLQAKMFPQYFALTAGANLLALGTLYLAGAAATAPGTRALVALAVSLAGLLANWLYLEPICTGLMFQRYDIENLPEKTDADKDRIAALYKQFGKWHGISSLVNLVSFCVVVAHGWFLATLL 286          
The following BLAST results are available for this feature:
BLAST of EWM25431.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585107192|gb|EWM25431.1|0.000e+0100.00protein of unknown function DUF4149 [Nannochlorops... [more]
gi|219127675|ref|XP_002184056.1|8.372e-5147.87predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|873231225|emb|CEM08876.1|3.818e-4446.03unnamed protein product [Vitrella brassicaformis C... [more]
gi|299117062|emb|CBN73833.1|9.613e-4342.41conserved unknown protein [Ectocarpus siliculosus][more]
gi|1210515006|dbj|GAX25969.1|1.942e-4140.76hypothetical protein FisN_4Hh547 [Fistulifera sola... [more]
gi|1210516923|dbj|GAX24412.1|4.082e-4144.39hypothetical protein FisN_4Lh547 [Fistulifera sola... [more]
gi|223996263|ref|XP_002287805.1|2.821e-4051.41predicted protein, partial [Thalassiosira pseudona... [more]
gi|552820016|ref|XP_005845520.1|3.170e-3743.78hypothetical protein CHLNCDRAFT_136618 [Chlorella ... [more]
gi|545355028|ref|XP_005643334.1|3.768e-3440.21hypothetical protein COCSUDRAFT_60092 [Coccomyxa s... [more]
gi|1004140274|gb|KXZ48274.1|6.234e-2838.34hypothetical protein GPECTOR_29g51 [Gonium pectora... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5222rna5222Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications