EWM25346.1, cds5206 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM25346.1 vs. NCBI_GenBank
Match: gi|585107107|gb|EWM25346.1| (60s ribosomal protein l44 [Nannochloropsis gaditana]) HSP 1 Score: 203.371 bits (516), Expect = 3.416e-66 Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0 Query: 1 MVCIPKERKTFCKGKKCKKHTVHKVTQYKAGKASNYAQGKRRYDRKQQGYGGQTKPILHKKAKTTKKVTLRLECKECKTKKQLVIKRTKHFELGEKKKATGHQY 104 MVCIPKERKTFCKGKKCKKHTVHKVTQYKAGKASNYAQGKRRYDRKQQGYGGQTKPILHKKAKTTKKVTLRLECKECKTKKQLVIKRTKHFELGEKKKATGHQY Sbjct: 1 MVCIPKERKTFCKGKKCKKHTVHKVTQYKAGKASNYAQGKRRYDRKQQGYGGQTKPILHKKAKTTKKVTLRLECKECKTKKQLVIKRTKHFELGEKKKATGHQY 104
BLAST of EWM25346.1 vs. NCBI_GenBank
Match: gi|224001032|ref|XP_002290188.1| (RL44, ribosomal protein 44 60S large ribosomal subunit [Thalassiosira pseudonana CCMP1335] >gi|220973610|gb|EED91940.1| RL44, ribosomal protein 44 60S large ribosomal subunit [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 168.318 bits (425), Expect = 2.927e-52 Identity = 81/104 (77.88%), Postives = 90/104 (86.54%), Query Frame = 0 Query: 1 MVCIPKERKTFCKGKKCKKHTVHKVTQYKAGKASNYAQGKRRYDRKQQGYGGQTKPILHKKAKTTKKVTLRLECKECKTKKQLVIKRTKHFELGEKKKATGHQY 104 MV +PKERKTFC GKKC+KH VHKVTQYKAGKASN+AQGKRRYD KQ G+GGQTKP+ HKKAKTT+K+ LRLECK CK KK L +KRTKHFELG KK +GHQY Sbjct: 1 MVNVPKERKTFCAGKKCRKHQVHKVTQYKAGKASNFAQGKRRYDSKQMGFGGQTKPVFHKKAKTTRKIVLRLECKTCKQKKHLTLKRTKHFELGAKKAESGHQY 104
BLAST of EWM25346.1 vs. NCBI_GenBank
Match: gi|397565229|gb|EJK44538.1| (hypothetical protein THAOC_36912 [Thalassiosira oceanica]) HSP 1 Score: 167.933 bits (424), Expect = 4.068e-52 Identity = 81/104 (77.88%), Postives = 90/104 (86.54%), Query Frame = 0 Query: 1 MVCIPKERKTFCKGKKCKKHTVHKVTQYKAGKASNYAQGKRRYDRKQQGYGGQTKPILHKKAKTTKKVTLRLECKECKTKKQLVIKRTKHFELGEKKKATGHQY 104 MV +PKERKT+C KC+ H VHKVTQYKAGKASN+AQGKRRYD KQ G+GGQTKP+ HKKAKTT+KV LRLECK+CKTKKQL +KRTKHFELG KK TGHQY Sbjct: 1 MVNVPKERKTYCASSKCRNHQVHKVTQYKAGKASNFAQGKRRYDTKQMGFGGQTKPVFHKKAKTTRKVVLRLECKKCKTKKQLTLKRTKHFELGAKKADTGHQY 104
BLAST of EWM25346.1 vs. NCBI_GenBank
Match: gi|1210517692|dbj|GAX23388.1| (large subunit ribosomal protein L44e [Fistulifera solaris] >gi|1210518066|dbj|GAX22997.1| large subunit ribosomal protein L44e [Fistulifera solaris]) HSP 1 Score: 164.851 bits (416), Expect = 6.987e-51 Identity = 81/104 (77.88%), Postives = 91/104 (87.50%), Query Frame = 0 Query: 1 MVCIPKERKTFCKGKKCKKHTVHKVTQYKAGKASNYAQGKRRYDRKQQGYGGQTKPILHKKAKTTKKVTLRLECKECKTKKQLVIKRTKHFELGEKKKATGHQY 104 MV +PKERKT+C GK CKKH VHKVTQYKAGKASN+AQGKRRYD KQ G+GGQTKP+ HKKAKTT+K+ LRLECK CKTKKQL +KRTKHFELG+K TGHQ+ Sbjct: 1 MVNVPKERKTYCAGK-CKKHAVHKVTQYKAGKASNFAQGKRRYDSKQMGFGGQTKPVFHKKAKTTRKIVLRLECKTCKTKKQLCLKRTKHFELGQKAAPTGHQF 103
BLAST of EWM25346.1 vs. NCBI_GenBank
Match: gi|1072228713|gb|OEU13448.1| (Ribosomal_L44-domain-containing protein [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 164.466 bits (415), Expect = 1.004e-50 Identity = 81/104 (77.88%), Postives = 93/104 (89.42%), Query Frame = 0 Query: 1 MVCIPKERKTFCKGKKCKKHTVHKVTQYKAGKASNYAQGKRRYDRKQQGYGGQTKPILHKKAKTTKKVTLRLECKECKTKKQLVIKRTKHFELGEKKKATGHQY 104 MV +PKERKT+C GK CKKH++HKVTQYKAGKASN+AQGKRRYD KQ G+GGQTKP+ HKKAKTT+K+ LRLECK+CKTKKQL KRTKHFELG+K A+GHQY Sbjct: 1 MVNVPKERKTYCAGK-CKKHSLHKVTQYKAGKASNFAQGKRRYDSKQMGFGGQTKPVFHKKAKTTRKIVLRLECKKCKTKKQLCHKRTKHFELGQKAAASGHQY 103
BLAST of EWM25346.1 vs. NCBI_GenBank
Match: gi|673015482|ref|XP_008861702.1| (60S ribosomal protein L44 [Aphanomyces invadans] >gi|574483300|gb|ETW10291.1| 60S ribosomal protein L44 [Aphanomyces invadans]) HSP 1 Score: 162.925 bits (411), Expect = 4.170e-50 Identity = 88/104 (84.62%), Postives = 97/104 (93.27%), Query Frame = 0 Query: 1 MVCIPKERKTFCKGKKCKKHTVHKVTQYKAGKASNYAQGKRRYDRKQQGYGGQTKPILHKKAKTTKKVTLRLECKECKTKKQLVIKRTKHFELGEKKKATGHQY 104 MV IPKER+TFCKGKKC+KHTVHKVTQYKAGKAS YAQG RRY+ KQQG+GGQTKP+ HKKAKTTKK+TLR+ECKECK KKQL IKRTKHFELGEKKK++GHQY Sbjct: 1 MVNIPKERRTFCKGKKCRKHTVHKVTQYKAGKASKYAQGARRYNEKQQGFGGQTKPVFHKKAKTTKKITLRMECKECKAKKQLPIKRTKHFELGEKKKSSGHQY 104
BLAST of EWM25346.1 vs. NCBI_GenBank
Match: gi|219116612|ref|XP_002179101.1| (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >gi|217409868|gb|EEC49799.1| predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 160.614 bits (405), Expect = 3.096e-49 Identity = 81/101 (80.20%), Postives = 89/101 (88.12%), Query Frame = 0 Query: 1 MVCIPKERKTFCKGKKCKKHTVHKVTQYKAGKASNYAQGKRRYDRKQQGYGGQTKPILHKKAKTTKKVTLRLECKECKTKKQLVIKRTKHFELGEKKKATG 101 MV +PKERKT+C GK CKKH HKVTQYKAGKASN+AQGKRRYD KQ G+GGQTKP+ HKKAKTT+KV LRLECK+CKTKKQL IKRTKHFELGEK K +G Sbjct: 1 MVNVPKERKTYCAGK-CKKHAAHKVTQYKAGKASNFAQGKRRYDSKQMGFGGQTKPVFHKKAKTTRKVVLRLECKKCKTKKQLCIKRTKHFELGEKAKQSG 100
BLAST of EWM25346.1 vs. NCBI_GenBank
Match: gi|695460854|ref|XP_009538087.1| (hypothetical protein PHYSODRAFT_289114 [Phytophthora sojae] >gi|348666363|gb|EGZ06190.1| hypothetical protein PHYSODRAFT_289114 [Phytophthora sojae]) HSP 1 Score: 159.844 bits (403), Expect = 5.996e-49 Identity = 86/104 (82.69%), Postives = 98/104 (94.23%), Query Frame = 0 Query: 1 MVCIPKERKTFCKGKKCKKHTVHKVTQYKAGKASNYAQGKRRYDRKQQGYGGQTKPILHKKAKTTKKVTLRLECKECKTKKQLVIKRTKHFELGEKKKATGHQY 104 MV +PKER+TFCKGKKC+KHTVHK+TQYKAGKAS YAQG RRY+ KQ+G+GGQTKP+ HKKAKTTKK+TLR+ECKECKTKKQL +KRTKHFELGEKKK+TGHQY Sbjct: 1 MVNMPKERRTFCKGKKCQKHTVHKITQYKAGKASKYAQGARRYNDKQKGFGGQTKPVFHKKAKTTKKITLRMECKECKTKKQLPMKRTKHFELGEKKKSTGHQY 104
BLAST of EWM25346.1 vs. NCBI_GenBank
Match: gi|1173956997|gb|OQS03635.1| (60S ribosomal protein L44 [Thraustotheca clavata]) HSP 1 Score: 159.073 bits (401), Expect = 1.365e-48 Identity = 87/104 (83.65%), Postives = 95/104 (91.35%), Query Frame = 0 Query: 1 MVCIPKERKTFCKGKKCKKHTVHKVTQYKAGKASNYAQGKRRYDRKQQGYGGQTKPILHKKAKTTKKVTLRLECKECKTKKQLVIKRTKHFELGEKKKATGHQY 104 MV IPKER+TFCKGKKC+KHT HKVTQYKAGKAS YAQG RRY+ KQQG+GGQTKP+ HKKAKTTKK+TLR+ECKECKTKKQL IKRTKHFELGEKKK +GH Y Sbjct: 1 MVNIPKERRTFCKGKKCRKHTTHKVTQYKAGKASKYAQGARRYNEKQQGFGGQTKPVFHKKAKTTKKITLRMECKECKTKKQLPIKRTKHFELGEKKKTSGHTY 104
BLAST of EWM25346.1 vs. NCBI_GenBank
Match: gi|675211347|ref|XP_008914558.1| (60S ribosomal protein L44 [Phytophthora parasitica INRA-310] >gi|566009255|gb|ETI32166.1| 60S ribosomal protein L44 [Phytophthora parasitica P1569] >gi|567946736|gb|ETK72541.1| 60S ribosomal protein L44 [Phytophthora parasitica] >gi|567975448|gb|ETL25996.1| 60S ribosomal protein L44 [Phytophthora parasitica] >gi|568004895|gb|ETL79205.1| 60S ribosomal protein L44 [Phytophthora parasitica] >gi|568034787|gb|ETM32452.1| 60S ribosomal protein L44 [Phytophthora parasitica] >gi|568085283|gb|ETN00194.1| 60S ribosomal protein L44 [Phytophthora parasitica INRA-310] >gi|570312956|gb|ETO60904.1| 60S ribosomal protein L44 [Phytophthora parasitica P1976] >gi|570936768|gb|ETP02025.1| 60S ribosomal protein L44 [Phytophthora parasitica CJ01A1] >gi|570967066|gb|ETP30185.1| 60S ribosomal protein L44 [Phytophthora parasitica P10297] >gi|970657988|gb|KUF95807.1| 60S ribosomal protein L44 [Phytophthora nicotianae] >gi|970660396|gb|KUF97950.1| hypothetical protein AM588_10008187 [Phytophthora nicotianae] >gi|1214686784|gb|OWZ03314.1| 60S ribosomal protein L44 [Phytophthora megakarya]) HSP 1 Score: 158.303 bits (399), Expect = 2.363e-48 Identity = 85/104 (81.73%), Postives = 97/104 (93.27%), Query Frame = 0 Query: 1 MVCIPKERKTFCKGKKCKKHTVHKVTQYKAGKASNYAQGKRRYDRKQQGYGGQTKPILHKKAKTTKKVTLRLECKECKTKKQLVIKRTKHFELGEKKKATGHQY 104 MV +PKER+TFCKGKKC+KHTVHK+TQYKAGKAS YAQG RRY+ KQ+G+GGQTKP+ HKKAKTTKK+TLR+ECKECKTKKQL +KRTKHFELGEKKK+ GHQY Sbjct: 1 MVNMPKERRTFCKGKKCQKHTVHKITQYKAGKASKYAQGARRYNDKQKGFGGQTKPVFHKKAKTTKKITLRMECKECKTKKQLPMKRTKHFELGEKKKSAGHQY 104 The following BLAST results are available for this feature:
BLAST of EWM25346.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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