EWM25346.1, cds5206 (CDS) Nannochloropsis gaditana

Overview
NameEWM25346.1
Unique Namecds5206
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002465.1:461971..462084 -
Alignment locationCM002465.1:461281..461481 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM25346.1
Product60s ribosomal protein l44
Orig transcript idgnl|cribi|Naga_100005g5.6640.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:461971..462084 -
CM002465.1supercontigCM002465.1:461281..461481 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005829cytosol
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Molecular Function
TermDefinition
GO:0005198structural molecule activity
GO:0003735structural constituent of ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: INTERPRO
TermDefinition
IPR011332Ribosomal_zn-bd
IPR000552Ribosomal_L44e
Homology
BLAST of EWM25346.1 vs. NCBI_GenBank
Match: gi|585107107|gb|EWM25346.1| (60s ribosomal protein l44 [Nannochloropsis gaditana])

HSP 1 Score: 203.371 bits (516), Expect = 3.416e-66
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0
Query:    1 MVCIPKERKTFCKGKKCKKHTVHKVTQYKAGKASNYAQGKRRYDRKQQGYGGQTKPILHKKAKTTKKVTLRLECKECKTKKQLVIKRTKHFELGEKKKATGHQY 104
            MVCIPKERKTFCKGKKCKKHTVHKVTQYKAGKASNYAQGKRRYDRKQQGYGGQTKPILHKKAKTTKKVTLRLECKECKTKKQLVIKRTKHFELGEKKKATGHQY
Sbjct:    1 MVCIPKERKTFCKGKKCKKHTVHKVTQYKAGKASNYAQGKRRYDRKQQGYGGQTKPILHKKAKTTKKVTLRLECKECKTKKQLVIKRTKHFELGEKKKATGHQY 104          
BLAST of EWM25346.1 vs. NCBI_GenBank
Match: gi|224001032|ref|XP_002290188.1| (RL44, ribosomal protein 44 60S large ribosomal subunit [Thalassiosira pseudonana CCMP1335] >gi|220973610|gb|EED91940.1| RL44, ribosomal protein 44 60S large ribosomal subunit [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 168.318 bits (425), Expect = 2.927e-52
Identity = 81/104 (77.88%), Postives = 90/104 (86.54%), Query Frame = 0
Query:    1 MVCIPKERKTFCKGKKCKKHTVHKVTQYKAGKASNYAQGKRRYDRKQQGYGGQTKPILHKKAKTTKKVTLRLECKECKTKKQLVIKRTKHFELGEKKKATGHQY 104
            MV +PKERKTFC GKKC+KH VHKVTQYKAGKASN+AQGKRRYD KQ G+GGQTKP+ HKKAKTT+K+ LRLECK CK KK L +KRTKHFELG KK  +GHQY
Sbjct:    1 MVNVPKERKTFCAGKKCRKHQVHKVTQYKAGKASNFAQGKRRYDSKQMGFGGQTKPVFHKKAKTTRKIVLRLECKTCKQKKHLTLKRTKHFELGAKKAESGHQY 104          
BLAST of EWM25346.1 vs. NCBI_GenBank
Match: gi|397565229|gb|EJK44538.1| (hypothetical protein THAOC_36912 [Thalassiosira oceanica])

HSP 1 Score: 167.933 bits (424), Expect = 4.068e-52
Identity = 81/104 (77.88%), Postives = 90/104 (86.54%), Query Frame = 0
Query:    1 MVCIPKERKTFCKGKKCKKHTVHKVTQYKAGKASNYAQGKRRYDRKQQGYGGQTKPILHKKAKTTKKVTLRLECKECKTKKQLVIKRTKHFELGEKKKATGHQY 104
            MV +PKERKT+C   KC+ H VHKVTQYKAGKASN+AQGKRRYD KQ G+GGQTKP+ HKKAKTT+KV LRLECK+CKTKKQL +KRTKHFELG KK  TGHQY
Sbjct:    1 MVNVPKERKTYCASSKCRNHQVHKVTQYKAGKASNFAQGKRRYDTKQMGFGGQTKPVFHKKAKTTRKVVLRLECKKCKTKKQLTLKRTKHFELGAKKADTGHQY 104          
BLAST of EWM25346.1 vs. NCBI_GenBank
Match: gi|1210517692|dbj|GAX23388.1| (large subunit ribosomal protein L44e [Fistulifera solaris] >gi|1210518066|dbj|GAX22997.1| large subunit ribosomal protein L44e [Fistulifera solaris])

HSP 1 Score: 164.851 bits (416), Expect = 6.987e-51
Identity = 81/104 (77.88%), Postives = 91/104 (87.50%), Query Frame = 0
Query:    1 MVCIPKERKTFCKGKKCKKHTVHKVTQYKAGKASNYAQGKRRYDRKQQGYGGQTKPILHKKAKTTKKVTLRLECKECKTKKQLVIKRTKHFELGEKKKATGHQY 104
            MV +PKERKT+C GK CKKH VHKVTQYKAGKASN+AQGKRRYD KQ G+GGQTKP+ HKKAKTT+K+ LRLECK CKTKKQL +KRTKHFELG+K   TGHQ+
Sbjct:    1 MVNVPKERKTYCAGK-CKKHAVHKVTQYKAGKASNFAQGKRRYDSKQMGFGGQTKPVFHKKAKTTRKIVLRLECKTCKTKKQLCLKRTKHFELGQKAAPTGHQF 103          
BLAST of EWM25346.1 vs. NCBI_GenBank
Match: gi|1072228713|gb|OEU13448.1| (Ribosomal_L44-domain-containing protein [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 164.466 bits (415), Expect = 1.004e-50
Identity = 81/104 (77.88%), Postives = 93/104 (89.42%), Query Frame = 0
Query:    1 MVCIPKERKTFCKGKKCKKHTVHKVTQYKAGKASNYAQGKRRYDRKQQGYGGQTKPILHKKAKTTKKVTLRLECKECKTKKQLVIKRTKHFELGEKKKATGHQY 104
            MV +PKERKT+C GK CKKH++HKVTQYKAGKASN+AQGKRRYD KQ G+GGQTKP+ HKKAKTT+K+ LRLECK+CKTKKQL  KRTKHFELG+K  A+GHQY
Sbjct:    1 MVNVPKERKTYCAGK-CKKHSLHKVTQYKAGKASNFAQGKRRYDSKQMGFGGQTKPVFHKKAKTTRKIVLRLECKKCKTKKQLCHKRTKHFELGQKAAASGHQY 103          
BLAST of EWM25346.1 vs. NCBI_GenBank
Match: gi|673015482|ref|XP_008861702.1| (60S ribosomal protein L44 [Aphanomyces invadans] >gi|574483300|gb|ETW10291.1| 60S ribosomal protein L44 [Aphanomyces invadans])

HSP 1 Score: 162.925 bits (411), Expect = 4.170e-50
Identity = 88/104 (84.62%), Postives = 97/104 (93.27%), Query Frame = 0
Query:    1 MVCIPKERKTFCKGKKCKKHTVHKVTQYKAGKASNYAQGKRRYDRKQQGYGGQTKPILHKKAKTTKKVTLRLECKECKTKKQLVIKRTKHFELGEKKKATGHQY 104
            MV IPKER+TFCKGKKC+KHTVHKVTQYKAGKAS YAQG RRY+ KQQG+GGQTKP+ HKKAKTTKK+TLR+ECKECK KKQL IKRTKHFELGEKKK++GHQY
Sbjct:    1 MVNIPKERRTFCKGKKCRKHTVHKVTQYKAGKASKYAQGARRYNEKQQGFGGQTKPVFHKKAKTTKKITLRMECKECKAKKQLPIKRTKHFELGEKKKSSGHQY 104          
BLAST of EWM25346.1 vs. NCBI_GenBank
Match: gi|219116612|ref|XP_002179101.1| (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >gi|217409868|gb|EEC49799.1| predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 160.614 bits (405), Expect = 3.096e-49
Identity = 81/101 (80.20%), Postives = 89/101 (88.12%), Query Frame = 0
Query:    1 MVCIPKERKTFCKGKKCKKHTVHKVTQYKAGKASNYAQGKRRYDRKQQGYGGQTKPILHKKAKTTKKVTLRLECKECKTKKQLVIKRTKHFELGEKKKATG 101
            MV +PKERKT+C GK CKKH  HKVTQYKAGKASN+AQGKRRYD KQ G+GGQTKP+ HKKAKTT+KV LRLECK+CKTKKQL IKRTKHFELGEK K +G
Sbjct:    1 MVNVPKERKTYCAGK-CKKHAAHKVTQYKAGKASNFAQGKRRYDSKQMGFGGQTKPVFHKKAKTTRKVVLRLECKKCKTKKQLCIKRTKHFELGEKAKQSG 100          
BLAST of EWM25346.1 vs. NCBI_GenBank
Match: gi|695460854|ref|XP_009538087.1| (hypothetical protein PHYSODRAFT_289114 [Phytophthora sojae] >gi|348666363|gb|EGZ06190.1| hypothetical protein PHYSODRAFT_289114 [Phytophthora sojae])

HSP 1 Score: 159.844 bits (403), Expect = 5.996e-49
Identity = 86/104 (82.69%), Postives = 98/104 (94.23%), Query Frame = 0
Query:    1 MVCIPKERKTFCKGKKCKKHTVHKVTQYKAGKASNYAQGKRRYDRKQQGYGGQTKPILHKKAKTTKKVTLRLECKECKTKKQLVIKRTKHFELGEKKKATGHQY 104
            MV +PKER+TFCKGKKC+KHTVHK+TQYKAGKAS YAQG RRY+ KQ+G+GGQTKP+ HKKAKTTKK+TLR+ECKECKTKKQL +KRTKHFELGEKKK+TGHQY
Sbjct:    1 MVNMPKERRTFCKGKKCQKHTVHKITQYKAGKASKYAQGARRYNDKQKGFGGQTKPVFHKKAKTTKKITLRMECKECKTKKQLPMKRTKHFELGEKKKSTGHQY 104          
BLAST of EWM25346.1 vs. NCBI_GenBank
Match: gi|1173956997|gb|OQS03635.1| (60S ribosomal protein L44 [Thraustotheca clavata])

HSP 1 Score: 159.073 bits (401), Expect = 1.365e-48
Identity = 87/104 (83.65%), Postives = 95/104 (91.35%), Query Frame = 0
Query:    1 MVCIPKERKTFCKGKKCKKHTVHKVTQYKAGKASNYAQGKRRYDRKQQGYGGQTKPILHKKAKTTKKVTLRLECKECKTKKQLVIKRTKHFELGEKKKATGHQY 104
            MV IPKER+TFCKGKKC+KHT HKVTQYKAGKAS YAQG RRY+ KQQG+GGQTKP+ HKKAKTTKK+TLR+ECKECKTKKQL IKRTKHFELGEKKK +GH Y
Sbjct:    1 MVNIPKERRTFCKGKKCRKHTTHKVTQYKAGKASKYAQGARRYNEKQQGFGGQTKPVFHKKAKTTKKITLRMECKECKTKKQLPIKRTKHFELGEKKKTSGHTY 104          
BLAST of EWM25346.1 vs. NCBI_GenBank
Match: gi|675211347|ref|XP_008914558.1| (60S ribosomal protein L44 [Phytophthora parasitica INRA-310] >gi|566009255|gb|ETI32166.1| 60S ribosomal protein L44 [Phytophthora parasitica P1569] >gi|567946736|gb|ETK72541.1| 60S ribosomal protein L44 [Phytophthora parasitica] >gi|567975448|gb|ETL25996.1| 60S ribosomal protein L44 [Phytophthora parasitica] >gi|568004895|gb|ETL79205.1| 60S ribosomal protein L44 [Phytophthora parasitica] >gi|568034787|gb|ETM32452.1| 60S ribosomal protein L44 [Phytophthora parasitica] >gi|568085283|gb|ETN00194.1| 60S ribosomal protein L44 [Phytophthora parasitica INRA-310] >gi|570312956|gb|ETO60904.1| 60S ribosomal protein L44 [Phytophthora parasitica P1976] >gi|570936768|gb|ETP02025.1| 60S ribosomal protein L44 [Phytophthora parasitica CJ01A1] >gi|570967066|gb|ETP30185.1| 60S ribosomal protein L44 [Phytophthora parasitica P10297] >gi|970657988|gb|KUF95807.1| 60S ribosomal protein L44 [Phytophthora nicotianae] >gi|970660396|gb|KUF97950.1| hypothetical protein AM588_10008187 [Phytophthora nicotianae] >gi|1214686784|gb|OWZ03314.1| 60S ribosomal protein L44 [Phytophthora megakarya])

HSP 1 Score: 158.303 bits (399), Expect = 2.363e-48
Identity = 85/104 (81.73%), Postives = 97/104 (93.27%), Query Frame = 0
Query:    1 MVCIPKERKTFCKGKKCKKHTVHKVTQYKAGKASNYAQGKRRYDRKQQGYGGQTKPILHKKAKTTKKVTLRLECKECKTKKQLVIKRTKHFELGEKKKATGHQY 104
            MV +PKER+TFCKGKKC+KHTVHK+TQYKAGKAS YAQG RRY+ KQ+G+GGQTKP+ HKKAKTTKK+TLR+ECKECKTKKQL +KRTKHFELGEKKK+ GHQY
Sbjct:    1 MVNMPKERRTFCKGKKCQKHTVHKITQYKAGKASKYAQGARRYNDKQKGFGGQTKPVFHKKAKTTKKITLRMECKECKTKKQLPMKRTKHFELGEKKKSAGHQY 104          
The following BLAST results are available for this feature:
BLAST of EWM25346.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585107107|gb|EWM25346.1|3.416e-66100.0060s ribosomal protein l44 [Nannochloropsis gaditan... [more]
gi|224001032|ref|XP_002290188.1|2.927e-5277.88RL44, ribosomal protein 44 60S large ribosomal sub... [more]
gi|397565229|gb|EJK44538.1|4.068e-5277.88hypothetical protein THAOC_36912 [Thalassiosira oc... [more]
gi|1210517692|dbj|GAX23388.1|6.987e-5177.88large subunit ribosomal protein L44e [Fistulifera ... [more]
gi|1072228713|gb|OEU13448.1|1.004e-5077.88Ribosomal_L44-domain-containing protein [Fragilari... [more]
gi|673015482|ref|XP_008861702.1|4.170e-5084.6260S ribosomal protein L44 [Aphanomyces invadans] >... [more]
gi|219116612|ref|XP_002179101.1|3.096e-4980.20predicted protein, partial [Phaeodactylum tricornu... [more]
gi|695460854|ref|XP_009538087.1|5.996e-4982.69hypothetical protein PHYSODRAFT_289114 [Phytophtho... [more]
gi|1173956997|gb|OQS03635.1|1.365e-4883.6560S ribosomal protein L44 [Thraustotheca clavata][more]
gi|675211347|ref|XP_008914558.1|2.363e-4881.7360S ribosomal protein L44 [Phytophthora parasitica... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5219rna5219Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications