rna5185, rna5185 (mRNA) Nannochloropsis gaditana

Overview
Namerna5185
Unique Namerna5185
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1062
Alignment locationCM002465.1:361783..363597 -

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Properties
Property NameValue
ProductRibosomal protein L4 domain protein
Orig transcript idgnl|cribi|Naga_100032g40.245.mrna
Orig protein idgnl|cribi|Naga_100032g40.245
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:361783..363597 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100032g40gene5005Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5185rna5185-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25502.1cds5173Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5185 ID=rna5185|Name=rna5185|organism=Nannochloropsis gaditana|type=mRNA|length=1062bp
ATGCATCGAGACGGAGCGAGGCCAGGCCCTTCCTGGACGTCTCCTGCGCA
CACATTGCTTTCACATCCTCGCATTCACGCCAGTGCACCCTCCCCCCCCC
CAGGCAGGCCCTGTATGCCCGAACGGAAGGCCGTCGTACCCTTCTGCTTC
CTCTCTGCGTCCCTCGCCATCTCTTCTGCCCTCCCGCCCCTTGCGTCCGC
TGTCAGAGCATTCTTCGTCTCTCCAGCCCCCACGGCCTCGTCCTCACCCA
GCGTCATCGTCAGCTCGGTCCCACCCGATAGCCGCATCTGCATGTCTGCT
GCCTTCCCCGTCGCCTCCTCCCCCCTGACCCCCGCTTCTTCCACCGCACC
CTCCCCTGACCAACGGTCTCGCAGGCTAAAAATCCTGTGTCTGCACGGAT
ACCTCCAATCCGCCTCCATTTTCCGGGGAAAACTCGGATCGCTTCGCAAG
GGGCTCAAGTCCAAGGCCGACTTTGTCTTCCTGGACGCACCCTTTCTCGC
ACAGGCACGCCCGTCGGAGGATCTTTTGAATGCGTGGACCGACCAAACGC
CCGAGGGGTCGCTGCAGCCTCGCCCTAGCAAAGCGTTGCACTACACGGGA
GTGGCAGAGACGACGATTCCCTTCCTCAAGCAGGCCCTGGCCGAGCACGC
GCCCGACGGTCTCTTGGCATTCTCGCAAGGAGCGACGGCGGCGGCGATCC
TCCTCGCGGCCCTGCAAAGAGACGAAAGGGAGGGGAAAGGGCAGAAGGAG
GGGGTAAGCCTGCCAAAATTTGCGATCTTGGTGGGCGGTTTCTTCCCCCG
GGACGAGGCAGTGGGACAGGGCGTGAAGGAGGGTGCGCCCAGGCTCCCGA
CGATGTTTGTGGGGGGCGCGGCGGATCAACTGGTGCCACTGACGCGGACC
AGGGAGCTGATGGCGTGTTGGGACGAGGCGGAGAAGGGGTGGATCACATT
GCATGAGCATGGAGGGGGGCATTTCGTCCCCACGTGGAAAGGGGAGTTCA
AGGAAGATGTAGTCAGGTTTGTCGACCGATTTACATCGGGCGAAGGGATC
AAGGGTCGGTAG
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protein sequence of rna5185

>rna5185-protein ID=rna5185-protein|Name=rna5185|organism=Nannochloropsis gaditana|type=polypeptide|length=381bp
MAAARPQVSVYNVEGASVAEVPLPAVLTAPIRPDVVNFVFTGLNKNHRQP
YAVSEKAGHQTSAESWGTGRAVARIPRVGGGGTQRSGQGAFGNMCRSGRM
FAPTKIWRRWHRKINITQKRYAVASALAASAVPALVMARGHWVDGVAEIP
FVLDESFAKVDKTAQAVKVLGALGVGPELDKSKDSKKIRSGKGKMRNRRY
VLRRGPLVIYSTGEEGVVKAVRNIVGVEAAHVDRLNLLQLAPGGHLGRFC
IWTRGAFERLDAVFGTQTEKSQVKLDYVLPRAPMANADLARIINSEEVQS
VVRPAVTETVRLPRKKNPLKNLAAMVRMNPYVLVHRRQELKRMAAAAGAK
KGGKEKEEKKARKAAGRAFYEQASKEGDIKF
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mRNA from alignment at CM002465.1:361783..363597-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5185 ID=rna5185|Name=rna5185|organism=Nannochloropsis gaditana|type=mRNA|length=1815bp|location=Sequence derived from alignment at CM002465.1:361783..363597- (Nannochloropsis gaditana)
AACTTACGGCAGCCACTGATGCTTCTATCGCCTCCTACTCGCTTCTCTTT
TGACGGACACACCTTATTTACACCTCGTTTTTAAAATTAGATTTGTGCAC
ATACGTACAGCATTATGGCTGCCGCACGACCCCAGGTCTCCGTCTACAAT
GTTGAAGGTGCTTCCGTGGCGGAAGTACCCCTTCCCGCCGTGCTCACGGT
GAGTGAAGACAAGAGAAAGAGGAATGTGGATGGTGGCGAGTCCACTTCTT
ACTAGTTGTGCGTCGATCATACGTAATGTATGGTTTAACTTGTTCATAAT
CTATAATTGCAACGATTCCTTTCATGCGCTTGGAAGAGTTATGCCTCTCC
GCGCTTTTTTTACGGCTTTTTATCAAGCACGCTCCTCTATGTCTTGTATG
GCGCTTCTTTATTGAGACTTGTGATGAAAAATTCACGGTCTCTTTGCTTG
CATGCGAGTGTGCTACCATCACATGCCGTGCCAATTGTCAAACCTCCCGT
ACTTTATCCTCCCTTGGCCCCAGGCTCCCATCCGTCCCGACGTGGTCAAT
TTCGTCTTCACCGGTCTGAACAAGAACCACCGCCAGCCCTACGCCGTATC
CGAGAAGGCTGGCCACCAAACCTCAGCCGAATCGTGGGGCACAGGTCGTG
CCGTGGCACGAATCCCCCGTGTGGGTGGAGGCGGCACCCAACGGTCCGGG
CAAGGTGCCTTCGGGAACATGTGCCGGAGCGGACGCATGTTCGCACCTAC
GAAGATCTGGCGCCGCTGGCACCGCAAGATCAACATCACCCAGAAGCGGT
ATGCCGTGGCTTCGGCGCTGGCGGCTTCGGCCGTGCCGGCGTTGGTCATG
GCCCGCGGCCACTGGGTGGATGGAGTGGCGGAGATCCCTTTCGTGTTGGA
CGAATCCTTCGCCAAGGTGGACAAGACGGCGCAGGCGGTCAAGGTCTTGG
GCGCCCTGGGTGTGGGCCCGGAGCTGGACAAGAGCAAGGACTCGAAGAAG
ATCCGCTCTGGGAAAGGGAAGATGCGAAACCGGCGGTACGTTCTGCGCCG
AGGCCCCCTGGTCATCTACTCAACAGGGGAGGAAGGAGTGGTCAAGGCCG
TGCGCAACATCGTGGGGGTGGAGGCCGCCCATGTGGACCGACTGAACCTG
CTCCAGCTGGCCCCCGGAGGCCACTTGGGTCGCTTTTGCATCTGGACTCG
GGGTGCGTTCGAGCGCTTGGACGCCGTCTTCGGGACGCAGACCGAGAAGA
GCCAAGTCAAGCTCGACTACGTGCTGCCCCGCGCCCCCATGGCCAACGCA
GACTTGGCCCGTATCATCAACAGCGAGGAGGTGCAATCCGTGGTGCGACC
TGCGGTGACAGAGACGGTGCGGCTGCCCCGCAAGAAGAACCCACTCAAGA
ACCTCGCCGCCATGGTCCGTATGAATCCTTACGTGCTGGTGCACCGTCGT
CAAGAGCTTAAGCGCATGGCCGCTGCGGCTGGCGCGAAGAAAGGAGGGAA
GGAGAAGGAGGAGAAGAAGGCGAGGAAGGCGGCGGGTCGGGCTTTCTACG
AGCAGGCCTCTAAGGAAGGGGATATCAAGTTCTAAGCGGGGCGGGGGGAT
GGGTGGGGGGGAGACAAGGACTGGTGGGCGGTAGGCAGTGATGTAAGACG
AGGAGGTGAGGCTTCGACGAACGTGCCCCTGCCTCATAATGGTCACGTCT
AGCCAGGTCACCTCGTCTCAAAAGAGGGCCCCGTGCATCAAAAGGAATGA
AAGGATTTCTCAGGCACGTGTCAGGAGCGTGAGTCCTAGAGCATTCGCCA
GTATCTAGTTTCTGT
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Coding sequence (CDS) from alignment at CM002465.1:361783..363597-

>rna5185 ID=rna5185|Name=rna5185|organism=Nannochloropsis gaditana|type=CDS|length=2292bp|location=Sequence derived from alignment at CM002465.1:361783..363597- (Nannochloropsis gaditana)
GCTCCCATCCGTCCCGACGTGGTCAATTTCGTCTTCACCGGTCTGAACAA
GAACCACCGCCAGCCCTACGCCGTATCCGAGAAGGCTGGCCACCAAACCT
CAGCCGAATCGTGGGGCACAGGTCGTGCCGTGGCACGAATCCCCCGTGTG
GGTGGAGGCGGCACCCAACGGTCCGGGCAAGGTGCCTTCGGGAACATGTG
CCGGAGCGGACGCATGTTCGCACCTACGAAGATCTGGCGCCGCTGGCACC
GCAAGATCAACATCACCCAGAAGCGGTATGCCGTGGCTTCGGCGCTGGCG
GCTTCGGCCGTGCCGGCGTTGGTCATGGCCCGCGGCCACTGGGTGGATGG
AGTGGCGGAGATCCCTTTCGTGTTGGACGAATCCTTCGCCAAGGTGGACA
AGACGGCGCAGGCGGTCAAGGTCTTGGGCGCCCTGGGTGTGGGCCCGGAG
CTGGACAAGAGCAAGGACTCGAAGAAGATCCGCTCTGGGAAAGGGAAGAT
GCGAAACCGGCGGTACGTTCTGCGCCGAGGCCCCCTGGTCATCTACTCAA
CAGGGGAGGAAGGAGTGGTCAAGGCCGTGCGCAACATCGTGGGGGTGGAG
GCCGCCCATGTGGACCGACTGAACCTGCTCCAGCTGGCCCCCGGAGGCCA
CTTGGGTCGCTTTTGCATCTGGACTCGGGGTGCGTTCGAGCGCTTGGACG
CCGTCTTCGGGACGCAGACCGAGAAGAGCCAAGTCAAGCTCGACTACGTG
CTGCCCCGCGCCCCCATGGCCAACGCAGACTTGGCCCGTATCATCAACAG
CGAGGAGGTGCAATCCGTGGTGCGACCTGCGGTGACAGAGACGGTGCGGC
TGCCCCGCAAGAAGAACCCACTCAAGAACCTCGCCGCCATGGTCCGTATG
AATCCTTACGTGCTGGTGCACCGTCGTCAAGAGCTTAAGCGCATGGCCGC
TGCGGCTGGCGCGAAGAAAGGAGGGAAGGAGAAGGAGGAGAAGAAGGCGA
GGAAGGCGGCGGGTCGGGCTTTCTACGAGCAGGCCTCTAAGGAAGGGGAT
ATCAAGTTCTAAATGGCTGCCGCACGACCCCAGGTCTCCGTCTACAATGT
TGAAGGTGCTTCCGTGGCGGAAGTACCCCTTCCCGCCGTGCTCACGGCTC
CCATCCGTCCCGACGTGGTCAATTTCGTCTTCACCGGTCTGAACAAGAAC
CACCGCCAGCCCTACGCCGTATCCGAGAAGGCTGGCCACCAAACCTCAGC
CGAATCGTGGGGCACAGGTCGTGCCGTGGCACGAATCCCCCGTGTGGGTG
GAGGCGGCACCCAACGGTCCGGGCAAGGTGCCTTCGGGAACATGTGCCGG
AGCGGACGCATGTTCGCACCTACGAAGATCTGGCGCCGCTGGCACCGCAA
GATCAACATCACCCAGAAGCGGTATGCCGTGGCTTCGGCGCTGGCGGCTT
CGGCCGTGCCGGCGTTGGTCATGGCCCGCGGCCACTGGGTGGATGGAGTG
GCGGAGATCCCTTTCGTGTTGGACGAATCCTTCGCCAAGGTGGACAAGAC
GGCGCAGGCGGTCAAGGTCTTGGGCGCCCTGGGTGTGGGCCCGGAGCTGG
ACAAGAGCAAGGACTCGAAGAAGATCCGCTCTGGGAAAGGGAAGATGCGA
AACCGGCGGTACGTTCTGCGCCGAGGCCCCCTGGTCATCTACTCAACAGG
GGAGGAAGGAGTGGTCAAGGCCGTGCGCAACATCGTGGGGGTGGAGGCCG
CCCATGTGGACCGACTGAACCTGCTCCAGCTGGCCCCCGGAGGCCACTTG
GGTCGCTTTTGCATCTGGACTCGGGGTGCGTTCGAGCGCTTGGACGCCGT
CTTCGGGACGCAGACCGAGAAGAGCCAAGTCAAGCTCGACTACGTGCTGC
CCCGCGCCCCCATGGCCAACGCAGACTTGGCCCGTATCATCAACAGCGAG
GAGGTGCAATCCGTGGTGCGACCTGCGGTGACAGAGACGGTGCGGCTGCC
CCGCAAGAAGAACCCACTCAAGAACCTCGCCGCCATGGTCCGTATGAATC
CTTACGTGCTGGTGCACCGTCGTCAAGAGCTTAAGCGCATGGCCGCTGCG
GCTGGCGCGAAGAAAGGAGGGAAGGAGAAGGAGGAGAAGAAGGCGAGGAA
GGCGGCGGGTCGGGCTTTCTACGAGCAGGCCTCTAAGGAAGGGGATATCA
AGTTCTAAATGGCTGCCGCACGACCCCAGGTCTCCGTCTACAATGTTGAA
GGTGCTTCCGTGGCGGAAGTACCCCTTCCCGCCGTGCTCACG
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Synonyms
Publications