EWM25502.1, cds5173 (CDS) Nannochloropsis gaditana

Overview
NameEWM25502.1
Unique Namecds5173
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002465.1:363400..363483 -
Alignment locationCM002465.1:362013..363074 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM25502.1
ProductRibosomal protein L4 domain protein
Orig transcript idgnl|cribi|Naga_100032g40.245.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:363400..363483 -
CM002465.1supercontigCM002465.1:362013..363074 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005829cytosol
GO:0005840ribosome
Vocabulary: Molecular Function
TermDefinition
GO:0005198structural molecule activity
GO:0003723RNA binding
GO:0003735structural constituent of ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: INTERPRO
TermDefinition
IPR013000Ribosomal_L4/L1e_euk/arc_CS
IPR025755Ribos_L4_C_dom
IPR023574Ribosomal_L4_dom
IPR002136Ribosomal_L4/L1e
Homology
BLAST of EWM25502.1 vs. NCBI_GenBank
Match: gi|585107268|gb|EWM25502.1| (Ribosomal protein L4 domain protein [Nannochloropsis gaditana])

HSP 1 Score: 774.622 bits (1999), Expect = 0.000e+0
Identity = 381/381 (100.00%), Postives = 381/381 (100.00%), Query Frame = 0
Query:    1 MAAARPQVSVYNVEGASVAEVPLPAVLTAPIRPDVVNFVFTGLNKNHRQPYAVSEKAGHQTSAESWGTGRAVARIPRVGGGGTQRSGQGAFGNMCRSGRMFAPTKIWRRWHRKINITQKRYAVASALAASAVPALVMARGHWVDGVAEIPFVLDESFAKVDKTAQAVKVLGALGVGPELDKSKDSKKIRSGKGKMRNRRYVLRRGPLVIYSTGEEGVVKAVRNIVGVEAAHVDRLNLLQLAPGGHLGRFCIWTRGAFERLDAVFGTQTEKSQVKLDYVLPRAPMANADLARIINSEEVQSVVRPAVTETVRLPRKKNPLKNLAAMVRMNPYVLVHRRQELKRMAAAAGAKKGGKEKEEKKARKAAGRAFYEQASKEGDIKF 381
            MAAARPQVSVYNVEGASVAEVPLPAVLTAPIRPDVVNFVFTGLNKNHRQPYAVSEKAGHQTSAESWGTGRAVARIPRVGGGGTQRSGQGAFGNMCRSGRMFAPTKIWRRWHRKINITQKRYAVASALAASAVPALVMARGHWVDGVAEIPFVLDESFAKVDKTAQAVKVLGALGVGPELDKSKDSKKIRSGKGKMRNRRYVLRRGPLVIYSTGEEGVVKAVRNIVGVEAAHVDRLNLLQLAPGGHLGRFCIWTRGAFERLDAVFGTQTEKSQVKLDYVLPRAPMANADLARIINSEEVQSVVRPAVTETVRLPRKKNPLKNLAAMVRMNPYVLVHRRQELKRMAAAAGAKKGGKEKEEKKARKAAGRAFYEQASKEGDIKF
Sbjct:    1 MAAARPQVSVYNVEGASVAEVPLPAVLTAPIRPDVVNFVFTGLNKNHRQPYAVSEKAGHQTSAESWGTGRAVARIPRVGGGGTQRSGQGAFGNMCRSGRMFAPTKIWRRWHRKINITQKRYAVASALAASAVPALVMARGHWVDGVAEIPFVLDESFAKVDKTAQAVKVLGALGVGPELDKSKDSKKIRSGKGKMRNRRYVLRRGPLVIYSTGEEGVVKAVRNIVGVEAAHVDRLNLLQLAPGGHLGRFCIWTRGAFERLDAVFGTQTEKSQVKLDYVLPRAPMANADLARIINSEEVQSVVRPAVTETVRLPRKKNPLKNLAAMVRMNPYVLVHRRQELKRMAAAAGAKKGGKEKEEKKARKAAGRAFYEQASKEGDIKF 381          
BLAST of EWM25502.1 vs. NCBI_GenBank
Match: gi|302832173|ref|XP_002947651.1| (component of cytosolic 80S ribosome and 60S large subunit [Volvox carteri f. nagariensis] >gi|300266999|gb|EFJ51184.1| component of cytosolic 80S ribosome and 60S large subunit [Volvox carteri f. nagariensis])

HSP 1 Score: 464.537 bits (1194), Expect = 4.146e-160
Identity = 233/394 (59.14%), Postives = 292/394 (74.11%), Query Frame = 0
Query:    1 MAAARPQVSVYNVEGASVAE-VPLPAVLTAPIRPDVVNFVFTGLNKNHRQPYAVSEKAGHQTSAESWGTGRAVARIPRVGGGGTQRSGQGAFGNMCRSGRMFAPTKIWRRWHRKINITQKRYAVASALAASAVPALVMARGHWVDGVAEIPFVLDESFAKVDKTAQAVKVLGALGVGPELDKSKDSKKIRSGKGKMRNRRYVLRRGPLVIYSTGEEGVVKAVRNIVGVEAAHVDRLNLLQLAPGGHLGRFCIWTRGAFERLDAVFGTQTEKSQVKLDYVLPRAPMANADLARIINSEEVQSVVRPAVTETVR-LPRKKNPLKNLAAMVRMNPYVLVHRRQELKRMAAAAGAKKGG--KEKEEK------------KARKAAGRAFYEQASKEGD 378
            MAAARP VSV N+E    AE   LPAV TAPIRPD+V  + T + KN RQ YAV  KAGHQT+AESWGTGRAV+RIPRV GGGT R+GQGAFGNMCR GRMFAPTK+WRRWHRK+N+ QKRYAV SALAASA+P+LVMARGH ++ V E+P VL ++   + KT++A+++L  +G  P+++KSKDSK +RSGKGK+RNRRYV+R+GPLV+++  +EG+ KA RN+ GVE   VDRLNLLQLAPGGHLGRFCIW++ AFE+LD +FGT T +S+VK  + +PR+ M N DL RIINS+E+QS VRPA     +  P KKNPL+NL A++++NPY  V RR E+        AKKG    EK EK            KA KA G+AFY++   + D
Sbjct:    1 MAAARPLVSVINIETGEAAEQTALPAVFTAPIRPDIVRTIHTNMAKNKRQAYAVFMKAGHQTAAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKVWRRWHRKVNVNQKRYAVCSALAASALPSLVMARGHRIEQVPEVPLVLSDAVEGLKKTSKALEILKKIGALPDVEKSKDSKSLRSGKGKLRNRRYVMRKGPLVVFAN-DEGISKAFRNLPGVEVTSVDRLNLLQLAPGGHLGRFCIWSKSAFEKLDKIFGTATSESEVKKGFKVPRSVMTNGDLTRIINSDEIQSAVRPAKAAGPKHAPLKKNPLRNLGALLKLNPYAKVARRIEI-----TCSAKKGAVRAEKLEKIAKGIATGAKKDKAVKAIGKAFYKKMLVDSD 388          
BLAST of EWM25502.1 vs. NCBI_GenBank
Match: gi|1026767236|gb|OAE27561.1| (hypothetical protein AXG93_2779s1090 [Marchantia polymorpha subsp. ruderalis])

HSP 1 Score: 462.996 bits (1190), Expect = 1.640e-159
Identity = 233/387 (60.21%), Postives = 287/387 (74.16%), Query Frame = 0
Query:    2 AAARPQVSVYNVEGASV-AEVPLPAVLTAPIRPDVVNFVFTGLNKNHRQPYAVSEKAGHQTSAESWGTGRAVARIPRVGGGGTQRSGQGAFGNMCRSGRMFAPTKIWRRWHRKINITQKRYAVASALAASAVPALVMARGHWVDGVAEIPFVLDESFAKVDKTAQAVKVLGALGVGPELDKSKDSKKIRSGKGKMRNRRYVLRRGPLVIYSTGEEGVVKAVRNIVGVEAAHVDRLNLLQLAPGGHLGRFCIWTRGAFERLDAVFGTQTEKSQVKLDYVLPRAPMANADLARIINSEEVQSVVRPAVTETVRLPRKKNPLKNLAAMVRMNPYVLVHRRQEL----KRMAAAAGAKKGGK-----EKEEKKARKAAGRAFYEQASKEGD 378
            AAARP VS+  ++G S  A   LP+VL APIR D+V FV   + KN RQPYAVS+KAGHQTSAESWGTGRAV+RIPRV GGGT R+GQGAFGNMCR GRMFAPTKIWR+WHRK+NI QKRYAV SALAASA+PAL++ARGH ++ V E+P VL ++   ++KT+ AVK+L  +G   +++K K S  IR+GKGKMRNRRY+ RRGPLV+Y T    +VKA RNI GVE A VDRLN+LQLAPGGHLGRF IWT+ AFE+LD++FG+  EKS VK  Y LPR+ M N+DLARIINS+E+QS+VRP  TE  R   KKNPLKNL AM+++NPY    RR EL    +R+ A A   K  +     E   K++ K +G A+Y+    + D
Sbjct:    3 AAARPLVSIQALDGESGGASTTLPSVLLAPIRKDIVEFVHANIAKNKRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRKWHRKVNINQKRYAVCSALAASAIPALLLARGHKIEKVPEVPLVLSDTVESIEKTSAAVKILKKIGAMDDIEKVKKSHNIRAGKGKMRNRRYISRRGPLVVYGTEGAKLVKAFRNIPGVEVASVDRLNILQLAPGGHLGRFIIWTKSAFEKLDSIFGSFEEKSAVKKGYRLPRSMMGNSDLARIINSDEIQSIVRPKKTEMKRRVLKKNPLKNLGAMLKLNPYAKTARRMELIAQEQRVKAKADKLKVKRATPQVEGATKESVKKSGEAWYQTMISDSD 389          
BLAST of EWM25502.1 vs. NCBI_GenBank
Match: gi|1004149057|gb|KXZ57029.1| (hypothetical protein GPECTOR_1g93 [Gonium pectorale])

HSP 1 Score: 460.685 bits (1184), Expect = 1.294e-158
Identity = 226/383 (59.01%), Postives = 293/383 (76.50%), Query Frame = 0
Query:    1 MAAARPQVSVYNVE-GASVAEVPLPAVLTAPIRPDVVNFVFTGLNKNHRQPYAVSEKAGHQTSAESWGTGRAVARIPRVGGGGTQRSGQGAFGNMCRSGRMFAPTKIWRRWHRKINITQKRYAVASALAASAVPALVMARGHWVDGVAEIPFVLDESFAKVDKTAQAVKVLGALGVGPELDKSKDSKKIRSGKGKMRNRRYVLRRGPLVIYSTGEEGVVKAVRNIVGVEAAHVDRLNLLQLAPGGHLGRFCIWTRGAFERLDAVFGTQTEKSQVKLDYVLPRAPMANADLARIINSEEVQSVVRPAVTETVR-LPRKKNPLKNLAAMVRMNPYVLVHRRQELKRMAAAAGAKKGGKEK---------EEKKARKAAGRAFYEQ 372
            MAAARP VS+ ++E G +  +  LPAV TAPIRPD+V  + T + KN RQ YAV  KAGHQT+AESWGTGRAV+RIPRV GGGT R+GQGAFGNMCR GRMFAPTK+WRRWHRK+N+ QKRYAV SALAASA+P+LV+ARGH ++ V E+P VL ++   V KT++A+++L  +G  P+++KSKDSK +R+GKGKMRNRRYV+R+GPLV+++  +EG+ KA RN+ GVE   VDRLNLLQLAPGGHLGRFCIW++ AFERLD +FGT T +S+VK  + +PR+ MAN DLAR+INS+E+QS V+PA     +  P KKNPL+NL A++++NPY  V RR E+ R A  A  +    EK         ++ KA KA G+AF+++
Sbjct:    1 MAAARPLVSIIDIETGEAGEQSALPAVFTAPIRPDIVRTIHTNIAKNKRQAYAVFMKAGHQTAAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKVWRRWHRKVNVNQKRYAVCSALAASALPSLVLARGHRIEQVPEVPLVLSDAVEGVKKTSKALEILKKVGALPDVEKSKDSKALRAGKGKMRNRRYVMRKGPLVVFAN-DEGISKAFRNLPGVEVTSVDRLNLLQLAPGGHLGRFCIWSKSAFERLDKIFGTTTTESEVKKGFKVPRSVMANGDLARLINSDEIQSAVKPAKAAGPKHAPLKKNPLRNLGALLKLNPYAKVARRVEITRSAKKAAVRAEKLEKIAKGVPTGAKKDKAVKAIGKAFHKK 382          
BLAST of EWM25502.1 vs. NCBI_GenBank
Match: gi|325183777|emb|CCA18236.1| (hypothetical protein LOC100194262 [Albugo laibachii Nc14])

HSP 1 Score: 456.447 bits (1173), Expect = 3.619e-157
Identity = 233/386 (60.36%), Postives = 294/386 (76.17%), Query Frame = 0
Query:    1 MAAARPQVSVYNVEGASV---AEVPLPAVLTAPIRPDVVNFVFTGLNKNHRQPYAVSEKAGHQTSAESWGTGRAVARIPRVGGGGTQRSGQGAFGNMCRSGRMFAPTKIWRRWHRKINITQKRYAVASALAASAVPALVMARGHWVDGVAEIPFVLDESFAKVDKTAQAVKVLGALGVGPELDKSKDSKKIRSGKGKMRNRRYVLRRGPLVIYSTGEEGVVKAVRNIVGVEAAHVDRLNLLQLAPGGHLGRFCIWTRGAFERLDAVFGTQTEKSQVKLDYVLPRAPMANADLARIINSEEVQSVVRPAVTETVRLPRKKNPLKNLAAMVRMNPYVLVHRRQELK-------RMAAAAGAKKGGKEKEEKKARKAAGRAFYEQASKE 376
            +AA RP VSVY+++  +V   ++V LP V TAPIRPDVV FV T + KN+RQPYAVS  AGHQ SAESWGTGRAV+RIPR+ GGGTQR+GQGAFGNMCRSGRMFAPT+IWR+WHRKIN+ Q+RYAVASALAASA+P+LV ARGH ++ +AEIP VLD+    + KT+ AVK+L  +G   +++K KDSKKIR+G+GK RNRRYV+RRGPL++Y++   G+ KA RNI GVE AHV+RLNLLQLAPGGHLGRF IWT+ AFE+LDA++GT ++KS  K+DY LPR  M NA+L RIINS+E+QS++RP + E  R  +KKNPLKNL  MV++NPY LV RR EL+       + A    AK+  K       R+   RA + + S +
Sbjct:    4 LAACRPVVSVYSIDADTVKVSSQVVLPTVFTAPIRPDVVKFVHTNMAKNNRQPYAVSRGAGHQHSAESWGTGRAVSRIPRIQGGGTQRAGQGAFGNMCRSGRMFAPTRIWRKWHRKINVNQRRYAVASALAASALPSLVTARGHRIEKLAEIPCVLDDMVESLQKTSHAVKLLSKIGADEDIEKVKDSKKIRTGRGKSRNRRYVMRRGPLIVYAS-PNGLEKAFRNIPGVELAHVERLNLLQLAPGGHLGRFVIWTKTAFEKLDALYGTYSKKSSAKVDYTLPRHLMNNANLGRIINSDEIQSIIRPGIYEKHRRCQKKNPLKNLGVMVKLNPYTLVARRAELRAQALRKEKKAEILAAKRNKKTALNNPKRREQSRALFTKNSAD 388          
BLAST of EWM25502.1 vs. NCBI_GenBank
Match: gi|976913726|gb|KVH99969.1| (60S ribosomal protein L4, C-terminal domain-containing protein [Cynara cardunculus var. scolymus])

HSP 1 Score: 456.447 bits (1173), Expect = 4.968e-157
Identity = 229/392 (58.42%), Postives = 286/392 (72.96%), Query Frame = 0
Query:    2 AAARPQVSVYNVEG---ASVAEVPLPAVLTAPIRPDVVNFVFTGLNKNHRQPYAVSEKAGHQTSAESWGTGRAVARIPRVGGGGTQRSGQGAFGNMCRSGRMFAPTKIWRRWHRKINITQKRYAVASALAASAVPALVMARGHWVDGVAEIPFVLDESFAKVDKTAQAVKVLGALGVGPELDKSKDSKKIRSGKGKMRNRRYVLRRGPLVIYSTGEEGVVKAVRNIVGVEAAHVDRLNLLQLAPGGHLGRFCIWTRGAFERLDAVFGTQTEKSQVKLDYVLPRAPMANADLARIINSEEVQSVVRPAVTETVRLPRKKNPLKNLAAMVRMNPYVLVHRRQELKRMAAAAGAKKGGK------------EKEEKKARKAAGRAFYEQASKEGD 378
            AAARP V++ +++       A +PLP V+ A IRPD+VNFV + ++KN RQPYAVS KAGHQTSAESWGTGRAV+RIPRV GGGT R+GQGAFGNMCR GRMFAPT+IWRRWHRKIN+ QKRYAV SA+AAS+VP+LVMARGH ++ V E+P V+ +S   V+KT  A+KVL  +G   + +K+KDS  IR GKGKMRNRRY+ R+GPL++Y T    +VKA RNI GVE A+V+RLNLL+LAPGGHLGRF IWT+ AFE+LD+++G+  + S+ K  YVLPRA MANADLARIINS+EVQSVV+P   E  R P KKNPLKNL  M+R+NPY      +  KRMA  A  ++                KEE    KAA +++Y+    + D
Sbjct:    3 AAARPLVTIQHIDSDMATDGASLPLPDVMKASIRPDIVNFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTRIWRRWHRKINVNQKRYAVVSAIAASSVPSLVMARGHRIESVPELPLVVSDSAEGVEKTQNAIKVLKQIGAYSDAEKAKDSVGIRPGKGKMRNRRYISRKGPLIVYGTEGAKLVKAFRNIPGVEIANVERLNLLKLAPGGHLGRFIIWTKSAFEKLDSIYGSFDKTSEKKKGYVLPRAKMANADLARIINSDEVQSVVKPIKKEVKRAPMKKNPLKNLNTMLRLNPYA-----KTAKRMAVLAEEQRKKAKKEKLDKKRKPITKEEATKIKAASKSWYKTMISDSD 389          
BLAST of EWM25502.1 vs. NCBI_GenBank
Match: gi|635365734|emb|CCI45903.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 454.907 bits (1169), Expect = 1.403e-156
Identity = 233/386 (60.36%), Postives = 293/386 (75.91%), Query Frame = 0
Query:    1 MAAARPQVSVYNVEGASV---AEVPLPAVLTAPIRPDVVNFVFTGLNKNHRQPYAVSEKAGHQTSAESWGTGRAVARIPRVGGGGTQRSGQGAFGNMCRSGRMFAPTKIWRRWHRKINITQKRYAVASALAASAVPALVMARGHWVDGVAEIPFVLDESFAKVDKTAQAVKVLGALGVGPELDKSKDSKKIRSGKGKMRNRRYVLRRGPLVIYSTGEEGVVKAVRNIVGVEAAHVDRLNLLQLAPGGHLGRFCIWTRGAFERLDAVFGTQTEKSQVKLDYVLPRAPMANADLARIINSEEVQSVVRPAVTETVRLPRKKNPLKNLAAMVRMNPYVLVHRRQELK-------RMAAAAGAKKGGKEKEEKKARKAAGRAFYEQASKE 376
            +AA RP VSVY+++  +V   ++V LP V TAPIRPDVVNFV T + KN RQ YAVS  AGHQ SAESWGTGRAV+RIPRV GGGTQR+GQGAFGNMCRSGRMFAPT+IWR+WHRKIN+ Q+RYAVASALAASA+P+LV ARGH ++ ++EIP VLD+    + KT+QAVK+L  +G   +++K KDSKKIR+G+GK RNRRYV+RRGPL++Y++   G+ KA RNI GVE AHV+RLNLLQLAPGGHLGRF IWT+ AFE+LD ++GT ++KS +K+DY LPR  M NA+L RIINS+E+QS+VRP +    R  +KKNPLKNL  MV++NPY LV RR EL+       + A    AK+  K       R+   RA + + S +
Sbjct:    4 LAACRPVVSVYSIDADTVKVSSQVVLPTVFTAPIRPDVVNFVHTNMAKNKRQAYAVSRGAGHQHSAESWGTGRAVSRIPRVQGGGTQRAGQGAFGNMCRSGRMFAPTRIWRKWHRKINVNQRRYAVASALAASALPSLVTARGHRIEKLSEIPCVLDDMVESLQKTSQAVKLLAKIGADEDIEKVKDSKKIRTGRGKSRNRRYVMRRGPLIVYAS-PNGLEKAFRNIPGVEVAHVERLNLLQLAPGGHLGRFVIWTKTAFEKLDTLYGTYSKKSNMKVDYTLPRHLMNNANLGRIINSDEIQSIVRPGIYHKHRRCQKKNPLKNLGVMVKLNPYTLVARRTELRAQALRKEKKAEILAAKRNKKSTVNDPKRREQSRALFAKNSAD 388          
BLAST of EWM25502.1 vs. NCBI_GenBank
Match: gi|669159434|ref|XP_008615279.1| (50S ribosomal protein L4e [Saprolegnia diclina VS20] >gi|530733196|gb|EQC31438.1| 50S ribosomal protein L4e [Saprolegnia diclina VS20])

HSP 1 Score: 453.751 bits (1166), Expect = 3.268e-156
Identity = 230/386 (59.59%), Postives = 291/386 (75.39%), Query Frame = 0
Query:    1 MAAARPQVSVYNVEGASV---AEVPLPAVLTAPIRPDVVNFVFTGLNKNHRQPYAVSEKAGHQTSAESWGTGRAVARIPRVGGGGTQRSGQGAFGNMCRSGRMFAPTKIWRRWHRKINITQKRYAVASALAASAVPALVMARGHWVDGVAEIPFVLDESFAKVDKTAQAVKVLGALGVGPELDKSKDSKKIRSGKGKMRNRRYVLRRGPLVIYSTGEEGVVKAVRNIVGVEAAHVDRLNLLQLAPGGHLGRFCIWTRGAFERLDAVFGTQTEKSQVKLDYVLPRAPMANADLARIINSEEVQSVVRPAVTETVRLPRKKNPLKNLAAMVRMNPYVLVHRRQELK-------RMAAAAGAKKGGKEKEEKKARKAAGRAFYEQASKE 376
            MAAARP VSV ++   +V   +++ LPAVLTAPIRPDVV FV T +NKN+RQ YAVS KAGHQ SAESWGTGRAVARIPR+ GGGTQR+GQGAFGNMCRSGRMFAPT+IWR+WHRKIN+ Q+R+AVASALAASAVP+LV+ARGH ++ V+EIP VLD+S     KTA A+K+L  +G   +++K KDSKKIR+G+GK RNRRY L++GPL +Y+    G+ KA RNI G+E   V+RLNLL LAPGGH+GRF +WT+ AFE+LD ++GT T+KS VK DY LPR  M NA+L R+INS+E+QSV+R  + +  R   KKNPLKNL AMV++NPY LV RR EL+       +  A   AK+  K  +    RKA  +A + + + +
Sbjct:    1 MAAARPVVSVLSIADEAVKVVSQIALPAVLTAPIRPDVVTFVHTQMNKNNRQAYAVSRKAGHQHSAESWGTGRAVARIPRISGGGTQRAGQGAFGNMCRSGRMFAPTRIWRKWHRKINVNQRRFAVASALAASAVPSLVLARGHRIEQVSEIPLVLDDSVESTQKTAAAMKILAKIGAHADVEKVKDSKKIRTGRGKSRNRRYSLKKGPLFVYAHA-NGIEKAFRNIPGIELVPVERLNLLSLAPGGHVGRFIVWTKSAFEQLDTIYGTYTKKSAVKSDYTLPRHVMTNANLGRLINSDEIQSVIRAGIYKNTRRAHKKNPLKNLGAMVKLNPYTLVARRAELRAEALRKEKKGALVAAKRNIKSTKNDPKRKAQSKALFAKNASD 385          
BLAST of EWM25502.1 vs. NCBI_GenBank
Match: gi|508700407|gb|EOX92303.1| (Ribosomal protein L4/L1 family [Theobroma cacao])

HSP 1 Score: 452.595 bits (1163), Expect = 2.000e-155
Identity = 228/388 (58.76%), Postives = 285/388 (73.45%), Query Frame = 0
Query:    2 AAARPQVSVYNVEGASVAEV----PLPAVLTAPIRPDVVNFVFTGLNKNHRQPYAVSEKAGHQTSAESWGTGRAVARIPRVGGGGTQRSGQGAFGNMCRSGRMFAPTKIWRRWHRKINITQKRYAVASALAASAVPALVMARGHWVDGVAEIPFVLDESFAKVDKTAQAVKVLGALGVGPELDKSKDSKKIRSGKGKMRNRRYVLRRGPLVIYSTGEEGVVKAVRNIVGVEAAHVDRLNLLQLAPGGHLGRFCIWTRGAFERLDAVFGTQTEKSQVKLDYVLPRAPMANADLARIINSEEVQSVVRPAVTETVRLPRKKNPLKNLAAMVRMNPYVLVHRR-------QELKRMAAAAGAKKGGKEKEEKKARKAAGRAFYEQASKEGD 378
            AA RP V+V  +EG    +     PLP V+ A IRPDVV+ V   ++KN RQPYAVS++AGHQTSAESWGTGRAV+RIPRV GGGT R+GQGAFGNMCR GRMFAPTKIWRRWHRKIN+  KRYAV SA++ASA+P+LVMARGH ++ V E+P V+ +S   V+KT+ A+KVL  +G   E++K+KDS+ IR GKGKMRNRRY+ R+GPL++Y T    +VKA RNI GVE A+V+RLNLL+LAPGGHLGRF IWT+ AFE+LD+++GT  + S+ K  YVLPR  M NADLARIINS+EVQSVV+P   +  R P KKNPLKNL AM+++NPY    RR       Q +K        K+    KEE  A K+AG+A+Y+    + D
Sbjct:    4 AAVRPLVNVQTLEGDMATDAAPTAPLPDVMKAAIRPDVVSHVHDNISKNKRQPYAVSKRAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNLKRYAVVSAISASAIPSLVMARGHRIESVPELPLVISDSAEGVEKTSAAIKVLKQIGAYAEVEKAKDSQAIRPGKGKMRNRRYISRKGPLIVYGTEGAKLVKAFRNIPGVEIANVERLNLLKLAPGGHLGRFVIWTKSAFEKLDSIYGTFDKPSEKKKGYVLPRPKMVNADLARIINSDEVQSVVKPIKKDVKRAPMKKNPLKNLNAMLKLNPYAKTARRMSLLAEAQRVKAKKEKLDKKRKPISKEEAVAIKSAGKAWYQTMISDSD 391          
BLAST of EWM25502.1 vs. NCBI_GenBank
Match: gi|1201319100|gb|OVA18185.1| (Ribosomal protein L4/L1e [Macleaya cordata])

HSP 1 Score: 449.129 bits (1154), Expect = 4.304e-154
Identity = 234/388 (60.31%), Postives = 289/388 (74.48%), Query Frame = 0
Query:    2 AAARPQVSVYNVEGASVAE----VPLPAVLTAPIRPDVVNFVFTGLNKNHRQPYAVSEKAGHQTSAESWGTGRAVARIPRVGGGGTQRSGQGAFGNMCRSGRMFAPTKIWRRWHRKINITQKRYAVASALAASAVPALVMARGHWVDGVAEIPFVLDESFAKVDKTAQAVKVLGALGVGPELDKSKDSKKIRSGKGKMRNRRYVLRRGPLVIYSTGEEGVVKAVRNIVGVEAAHVDRLNLLQLAPGGHLGRFCIWTRGAFERLDAVFGTQTEKSQVKLDYVLPRAPMANADLARIINSEEVQSVVRPAVTETVRLPRKKNPLKNLAAMVRMNPYVLVHRR-------QELKRMAAAAGAKKGGKEKEEKKARKAAGRAFYEQASKEGD 378
            AAARP V+V+ ++G    +    +PLP V+ A IRPD+VNFV   ++KNHRQPYAVS KAGHQTSAESWGTGRAV+RIPRV GGGT R+GQGAFGNMCR GRMFAPT+IWRRWHRKIN+ QKRYAV SALAASAVP+LV+ARGH V+ V EIP V+ +S   V+KT+ A+K L  +G  P+ +K+KDS  IR GKGKMRNRRY+ R+GPL++Y T    +VKA RNI GVE A+V+RLNLL+LAPGGHLGRF IWT+ AFE+LD+V+G+  ++S+ K  YVLPR+ M NADLARIINS+EVQSVVRP   ++ R P KKNPLKNL  ++R+NPY    RR       Q +K        K+    KEE    KAAG+A+Y+    + D
Sbjct:    4 AAARPLVTVHALDGDMATDGGNTLPLPDVMKASIRPDIVNFVHANMSKNHRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTRIWRRWHRKINVNQKRYAVVSALAASAVPSLVLARGHRVESVPEIPLVVGDSAEGVEKTSAAIKFLKQVGAYPDAEKAKDSHSIRPGKGKMRNRRYINRKGPLIVYGTEGSKIVKAFRNIPGVEVANVERLNLLKLAPGGHLGRFIIWTKSAFEKLDSVYGSFEKQSEKKKGYVLPRSKMVNADLARIINSDEVQSVVRPIKKDSKRAPMKKNPLKNLNTLLRLNPYAKTARRMALLAEAQRVKAKKEKLEKKRTNIPKEEVAKIKAAGKAWYQTMISDSD 391          
The following BLAST results are available for this feature:
BLAST of EWM25502.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585107268|gb|EWM25502.1|0.000e+0100.00Ribosomal protein L4 domain protein [Nannochlorops... [more]
gi|302832173|ref|XP_002947651.1|4.146e-16059.14component of cytosolic 80S ribosome and 60S large ... [more]
gi|1026767236|gb|OAE27561.1|1.640e-15960.21hypothetical protein AXG93_2779s1090 [Marchantia p... [more]
gi|1004149057|gb|KXZ57029.1|1.294e-15859.01hypothetical protein GPECTOR_1g93 [Gonium pectoral... [more]
gi|325183777|emb|CCA18236.1|3.619e-15760.36hypothetical protein LOC100194262 [Albugo laibachi... [more]
gi|976913726|gb|KVH99969.1|4.968e-15758.4260S ribosomal protein L4, C-terminal domain-contai... [more]
gi|635365734|emb|CCI45903.1|1.403e-15660.36unnamed protein product [Albugo candida][more]
gi|669159434|ref|XP_008615279.1|3.268e-15659.5950S ribosomal protein L4e [Saprolegnia diclina VS2... [more]
gi|508700407|gb|EOX92303.1|2.000e-15558.76Ribosomal protein L4/L1 family [Theobroma cacao][more]
gi|1201319100|gb|OVA18185.1|4.304e-15460.31Ribosomal protein L4/L1e [Macleaya cordata][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5185rna5185Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications