rna5164, rna5164 (mRNA) Nannochloropsis gaditana

Overview
Namerna5164
Unique Namerna5164
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length807
Alignment locationCM002465.1:303371..304604 -

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Properties
Property NameValue
Productgnat family
Orig transcript idgnl|cribi|Naga_100032g17.260.mrna
Orig protein idgnl|cribi|Naga_100032g17.260
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:303371..304604 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100032g17gene4985Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25517.1cds5152Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5164rna5164-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5164 ID=rna5164|Name=rna5164|organism=Nannochloropsis gaditana|type=mRNA|length=807bp
ATGCCCGTGCCAACAGATGGCAATTTAGCGGCGATGCAATCCCGGTGGCC
TGAGGTCGATCTACGAGTGCTGTCGTCGCACTTGAGACTTGCTAAAGATG
ACTTGGATGATGCTATACGGCACTATGAAGGTTTTTTGGCATGGCGTTCG
GCATTAGGGCCTGTTAGTATCGCGTCGGTCGAAGACAATTTGCGGGCAAA
CAATGGCAAAGGTCCTTTCATGTTGACGCTGGAATACGAGCCTGAGGAAG
CTGGAAAGCATCCACCGATCATTATGATGCAAGGAATGATTAAAGGTACT
CGCGCAGAAATGGTCAAGCAGGGGGGGGGGTTCCGCATGCCGGACGCCGA
CTACAGAGCCGCAGTCTTCGACGTTCTCCACCAGTACTATCCCTGGATGG
AAAGCAGTCAAGTCATATTTTTGGATCCTTTGTACGTGGTCAAGATGGCC
TTGTGGGGCATGGGAAAGATTTTTGGGCCGTCGTGGAAGGAGAAATTTGT
GGTCGGGTCGAAGGCGGCGTGGCCCGAAGGAGTGAAGGACCCGGACGTGG
AGAAGTACATGGAGACGACGCCAGGAGGCAGGGCCCTGGGCTGGGAGGCC
GACGGAACAATCAGATATGATATGGAGGAGTACATTGAAAGGCGCAAGGA
GTGGGTGAGCACCAATGTATGTCTAAACGATCATATCCTTCAGGACACTG
TCTTAAGAAAGGGAAATTTGGGCAGAGGGAGCAGACGAGCGGGAGCTATG
CGGTGCAGAACGGCAGGGTCCAAGCCCCATGAGTCCGTTAAAACGTGGAA
AGCATGA
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protein sequence of rna5164

>rna5164-protein ID=rna5164-protein|Name=rna5164|organism=Nannochloropsis gaditana|type=polypeptide|length=302bp
MFRNHSCDSSCRITGEMGWKSEENGSKRQRRRNGAVDFKLPSLILLLPVL
QLLPLVASLQLQHSTCLRSSLTAIYSASSRGCRASSSTSIKSGSLNIFPA
AVTSSAPNLSLPRTLSQIEIRRATVRDFPAIASTRKTIIFVPKQGGGNGA
GVVRRALENASSQEEREMLSKIPYLVTGQAIAFIAIGKPKISLGGSGSSR
VIGTVDVFERDREGPSLPRRLFLKNMIVDPDFRRQGLARRLLARTEDHAR
EVGIKEIHLEVLANNEAAKALYEEQGFEYTRGPLDSLWRLLKIGKVTMTK
RL
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mRNA from alignment at CM002465.1:303371..304604-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5164 ID=rna5164|Name=rna5164|organism=Nannochloropsis gaditana|type=mRNA|length=1234bp|location=Sequence derived from alignment at CM002465.1:303371..304604- (Nannochloropsis gaditana)
GCCTCCGGTCACGTACTAAGCATGGAACTGCGTGAAAATGTAGAGAACGA
CACGACGTATTGCTGCGAGGACCATATTGTTGTCGCGTGCAATGGTACGA
CCAACCAAAACTGGTAAAGGATTAAAAAAGAGATCACCTTGGAACTCGCC
AGGTACTACATGCCTGTTCTCGCTTCCAGAAAACATCGCCCACGCGTATC
TTGACCGCTAATAAGAAGTCATGTTCCGCAATCACAGTTGTGACTCGTCT
TGCAGAATTACAGGGGAGATGGGATGGAAAAGTGAAGAGAATGGCAGCAA
ACGACAAAGAAGAAGAAATGGCGCTGTCGATTTCAAGCTGCCCTCCCTGA
TACTCCTACTCCCGGTGCTGCAGCTACTCCCTCTTGTCGCATCCCTCCAA
CTACAACATTCGACATGTCTCCGCTCCTCTCTCACCGCGATTTATAGCGC
CAGCAGTAGGGGCTGCAGGGCTAGTAGTAGCACCAGCATCAAGAGTGGCA
GCCTGAACATTTTTCCCGCCGCCGTTACCTCCTCTGCACCTAACCTCTCC
CTACCCAGGACCCTCAGCCAGATTGAAATTCGGCGAGCAACTGTCAGGGA
TTTCCCGGCCATAGCTAGTACTCGCAAAACTATCATCTTCGTGCCTAAAC
AGGGCGGTGGAAATGGTGCAGGCGTTGTCCGCCGGGCATTGGAAAATGCA
AGCTCCCAGGAAGAGCGGGAGATGCTGTCCAAAATCCCTTACCTTGTCAC
CGGACAGGCCATCGCCTTCATCGCCATAGGGAAGCCAAAGATTTCCTTGG
GAGGAAGCGGGTCTTCCCGCGTGATCGGTACTGTCGATGTCTTCGAACGT
GACCGGGAGGGTCCGTCCTTACCGCGCCGCCTGTTCCTGAAAAATATGAT
TGTGGACCCTGACTTCCGGAGGCAGGGCCTTGCGAGAAGACTCCTCGCGC
GTACGGAGGACCACGCCAGGGAAGTTGGAATCAAGGAGATCCACTTGGAG
GTGCTGGCCAACAACGAGGCAGCCAAGGCTCTGTACGAGGAGCAAGGGTT
CGAGTACACGCGTGGCCCCCTTGACTCCCTTTGGCGTCTCCTGAAGATCG
GTAAAGTAACCATGACTAAGCGGTTGTGAACACTATGAAGGCAAAAGCAA
AAACCTTGTGGGAGGAAAGAGAAGGCGGTGGTCGCATTTGTCGACGAAGC
CCTCTCGAGGGCCCCAGTTGTGTGTGATCTTTCT
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Coding sequence (CDS) from alignment at CM002465.1:303371..304604-

>rna5164 ID=rna5164|Name=rna5164|organism=Nannochloropsis gaditana|type=CDS|length=909bp|location=Sequence derived from alignment at CM002465.1:303371..304604- (Nannochloropsis gaditana)
ATGTTCCGCAATCACAGTTGTGACTCGTCTTGCAGAATTACAGGGGAGAT
GGGATGGAAAAGTGAAGAGAATGGCAGCAAACGACAAAGAAGAAGAAATG
GCGCTGTCGATTTCAAGCTGCCCTCCCTGATACTCCTACTCCCGGTGCTG
CAGCTACTCCCTCTTGTCGCATCCCTCCAACTACAACATTCGACATGTCT
CCGCTCCTCTCTCACCGCGATTTATAGCGCCAGCAGTAGGGGCTGCAGGG
CTAGTAGTAGCACCAGCATCAAGAGTGGCAGCCTGAACATTTTTCCCGCC
GCCGTTACCTCCTCTGCACCTAACCTCTCCCTACCCAGGACCCTCAGCCA
GATTGAAATTCGGCGAGCAACTGTCAGGGATTTCCCGGCCATAGCTAGTA
CTCGCAAAACTATCATCTTCGTGCCTAAACAGGGCGGTGGAAATGGTGCA
GGCGTTGTCCGCCGGGCATTGGAAAATGCAAGCTCCCAGGAAGAGCGGGA
GATGCTGTCCAAAATCCCTTACCTTGTCACCGGACAGGCCATCGCCTTCA
TCGCCATAGGGAAGCCAAAGATTTCCTTGGGAGGAAGCGGGTCTTCCCGC
GTGATCGGTACTGTCGATGTCTTCGAACGTGACCGGGAGGGTCCGTCCTT
ACCGCGCCGCCTGTTCCTGAAAAATATGATTGTGGACCCTGACTTCCGGA
GGCAGGGCCTTGCGAGAAGACTCCTCGCGCGTACGGAGGACCACGCCAGG
GAAGTTGGAATCAAGGAGATCCACTTGGAGGTGCTGGCCAACAACGAGGC
AGCCAAGGCTCTGTACGAGGAGCAAGGGTTCGAGTACACGCGTGGCCCCC
TTGACTCCCTTTGGCGTCTCCTGAAGATCGGTAAAGTAACCATGACTAAG
CGGTTGTGA
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Synonyms
Publications