EWM25510.1, cds5149 (CDS) Nannochloropsis gaditana

Overview
NameEWM25510.1
Unique Namecds5149
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002465.1:295836..296726 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM25510.1
Productsplicing factor 3a subunit 2
Orig transcript idgnl|cribi|Naga_100032g12.253.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:295836..296726 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0016043cellular component organization
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0003676nucleic acid binding
GO:0008270zinc ion binding
Vocabulary: INTERPRO
TermDefinition
IPR000690Znf_C2H2_matrin
IPR019134Cactin_C
IPR003604Znf_U1
Homology
BLAST of EWM25510.1 vs. NCBI_GenBank
Match: gi|585107276|gb|EWM25510.1| (splicing factor 3a subunit 2 [Nannochloropsis gaditana])

HSP 1 Score: 608.986 bits (1569), Expect = 0.000e+0
Identity = 296/296 (100.00%), Postives = 296/296 (100.00%), Query Frame = 0
Query:    1 MSESLANADRRERLRKLALETIDLNKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQENLARRAAREAKEQQYRPNKPTMVAARRMMKIGRPGYKVTKARDLSTRQRSLIFEIDYPQAEEDVQPRHRFMSAFEQRVESTKEREWQYLLFACEPYETIGFKIPNVEIDKGEGRFLSQWDPKARKFLLQLYFRERGEGEAGRGASGEGGRGTPMPVASPQNGSSNYQQGFGQEGRMQFEERRTQLPPPPPPQHYQPQQSLGSFGQRHGHAAGYGYGGGPPPPPPPPPRHGGY 296
            MSESLANADRRERLRKLALETIDLNKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQENLARRAAREAKEQQYRPNKPTMVAARRMMKIGRPGYKVTKARDLSTRQRSLIFEIDYPQAEEDVQPRHRFMSAFEQRVESTKEREWQYLLFACEPYETIGFKIPNVEIDKGEGRFLSQWDPKARKFLLQLYFRERGEGEAGRGASGEGGRGTPMPVASPQNGSSNYQQGFGQEGRMQFEERRTQLPPPPPPQHYQPQQSLGSFGQRHGHAAGYGYGGGPPPPPPPPPRHGGY
Sbjct:    1 MSESLANADRRERLRKLALETIDLNKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQENLARRAAREAKEQQYRPNKPTMVAARRMMKIGRPGYKVTKARDLSTRQRSLIFEIDYPQAEEDVQPRHRFMSAFEQRVESTKEREWQYLLFACEPYETIGFKIPNVEIDKGEGRFLSQWDPKARKFLLQLYFRERGEGEAGRGASGEGGRGTPMPVASPQNGSSNYQQGFGQEGRMQFEERRTQLPPPPPPQHYQPQQSLGSFGQRHGHAAGYGYGGGPPPPPPPPPRHGGY 296          
BLAST of EWM25510.1 vs. NCBI_GenBank
Match: gi|299473576|emb|CBN77971.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 306.605 bits (784), Expect = 6.506e-101
Identity = 142/198 (71.72%), Postives = 167/198 (84.34%), Query Frame = 0
Query:    1 MSESLANADRRERLRKLALETIDLNKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQENLARRAAREAKEQQYRPNKPTMVAARRMMKIGRPGYKVTKARDLSTRQRSLIFEIDYPQAEEDVQPRHRFMSAFEQRVESTKEREWQYLLFACEPYETIGFKIPNVEIDKGEGRFLSQWDPKARKFLLQLYFRE 198
            MSE  A  DRRERLRKLA ET+DLNKDPYFMRNHLG YECKLCLTLHNNEGNYLAHTQGKRHQ+NLARRAA EAK    +P     V  R ++KIGRPGYKVTKARDLS+ QRSL+FE+DYP+AE+  QPRHRFMSA+EQ+VE+  ++ +QYLLFAC+PYETIGFK+PN++IDK EGRF + W+ +A+KF LQLYF +
Sbjct:   96 MSEGQAAVDRRERLRKLAQETVDLNKDPYFMRNHLGKYECKLCLTLHNNEGNYLAHTQGKRHQQNLARRAAMEAKNALVKPQPAITVQTRNVIKIGRPGYKVTKARDLSSNQRSLLFEVDYPEAEDGAQPRHRFMSAYEQKVEAP-DKGYQYLLFACDPYETIGFKVPNLKIDKQEGRFFTNWEKEAKKFTLQLYFED 292          
BLAST of EWM25510.1 vs. NCBI_GenBank
Match: gi|676389171|ref|XP_009037864.1| (hypothetical protein AURANDRAFT_28099 [Aureococcus anophagefferens] >gi|323451351|gb|EGB07228.1| hypothetical protein AURANDRAFT_28099 [Aureococcus anophagefferens])

HSP 1 Score: 289.271 bits (739), Expect = 6.721e-95
Identity = 136/209 (65.07%), Postives = 162/209 (77.51%), Query Frame = 0
Query:    2 SESLANADRRERLRKLALETIDLNKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQENLARRAAREAKEQQYRPNKPTMVAARRMMKIGRPGYKVTKARDLSTRQRSLIFEIDYPQAEEDVQPRHRFMSAFEQRVESTKEREWQYLLFACEPYETIGFKIPNVEIDKGEGRFLSQWDPKARKFLLQLYFRERGEGEAGRGASG 210
            S   AN DRRERLRKLALET+DLNKDPYFMRNHLG+YECKLCLTLHN EGNYLAHTQGKRHQ+NLARRA +EA++    P     V  R  +KIGRPGYKVTK+RD +T QR L+FE+DYP+A++  QPRHRFMSA+EQRVE   ++ +QYLLFACEPYETIGFKIPN ++DK +GRF + WD   +KF L L F +  +    + AS 
Sbjct:   18 SSEQANVDRRERLRKLALETVDLNKDPYFMRNHLGTYECKLCLTLHNTEGNYLAHTQGKRHQQNLARRAFKEARDAPIAPAATRYVEKRHTIKIGRPGYKVTKSRDAATSQRCLLFEVDYPEADDASQPRHRFMSAYEQRVEPP-DKAYQYLLFACEPYETIGFKIPNHDVDKDQGRFFTNWDVVGKKFTLSLQFDDDAKPAPAQAASA 225          
BLAST of EWM25510.1 vs. NCBI_GenBank
Match: gi|551552858|ref|XP_005763774.1| (hypothetical protein EMIHUDRAFT_357810 [Emiliania huxleyi CCMP1516] >gi|485613258|gb|EOD11345.1| hypothetical protein EMIHUDRAFT_357810 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 285.419 bits (729), Expect = 2.215e-93
Identity = 137/205 (66.83%), Postives = 162/205 (79.02%), Query Frame = 0
Query:    2 SESLANADRRERLRKLALETIDLNKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQENLARRAAREAKEQQYRPNKPT-MVAARRMMKIGRPGYKVTKARDLSTRQRSLIFEIDYPQAEEDVQPRHRFMSAFEQRVESTKEREWQYLLFACEPYETIGFKIPNVEIDKGEGRFLSQWDPKARKFLLQLYFRERGEGEAG 205
            S+  A  DRRERLR+LAL+T+DL KDPYFM+NHLGSYECKLCLTLHNNEGNYLAHTQGKRHQ+NLARRAA+EA      P   +  V AR+ +KIGRPGY+VTK  D  T+QRSL+FE+DYP+ EE +QPRHRFMSAFEQRVE   ++EWQYLL A EPYET+ FKIPN EIDK  G+F S W+ + + F +QLYF+  GEG  G
Sbjct:   19 SDIQAKVDRRERLRQLALQTVDLMKDPYFMKNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQQNLARRAAKEALNNPTLPQANSRTVKARKTVKIGRPGYRVTKQLDPETQQRSLLFEVDYPEIEESLQPRHRFMSAFEQRVEPP-DKEWQYLLVAAEPYETVAFKIPNTEIDKAHGKFHSAWNDETKTFTVQLYFKAGGEGPHG 222          
BLAST of EWM25510.1 vs. NCBI_GenBank
Match: gi|1067085317|ref|XP_018026577.1| (PREDICTED: splicing factor 3A subunit 2-like [Hyalella azteca] >gi|1067085319|ref|XP_018026578.1| PREDICTED: splicing factor 3A subunit 2-like [Hyalella azteca])

HSP 1 Score: 272.322 bits (695), Expect = 3.843e-86
Identity = 136/229 (59.39%), Postives = 169/229 (73.80%), Query Frame = 0
Query:    2 SESLANADRRERLRKLALETIDLNKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQENLARRAAREAKEQQYRPN-KPTMVAARRMMKIGRPGYKVTKARDLSTRQRSLIFEIDYPQAEEDVQPRHRFMSAFEQRVESTKEREWQYLLFACEPYETIGFKIPNVEIDKGEGRFLSQWDPKARKFLLQLYFRERGEGEAGR-------GASGEGGRGTPMPVAS 222
            S S +N DRRERLR+LALETIDLNKDPYFM+NHLGSYECKLCLTLHNNEG+YLAHTQGK+HQ NLARRAA+EAKE   +P  +   V  ++ +KIGRPGY+VTK RD    Q+SL+F++DYP+  E + PRHRFMSA+EQ+VE   +R+WQYLLFA EPYETI FK+P+ E+DKGE RF + W+ + ++F LQ  F+   + +            S  GG G P P AS
Sbjct:   18 SWSESNKDRRERLRQLALETIDLNKDPYFMKNHLGSYECKLCLTLHNNEGSYLAHTQGKKHQTNLARRAAKEAKEAPTQPAPEKARVELKKFVKIGRPGYRVTKQRDPENGQQSLLFQVDYPEIGEGIAPRHRFMSAYEQKVEPP-DRKWQYLLFAAEPYETIAFKVPSREVDKGENRFWTLWNKETKQFFLQFSFKIDPKAKLVPPGPPPPITISSSGGPGHPPPAAS 245          
BLAST of EWM25510.1 vs. NCBI_GenBank
Match: gi|928014226|ref|XP_013876667.1| (PREDICTED: splicing factor 3A subunit 2 [Austrofundulus limnaeus] >gi|928014229|ref|XP_013876673.1| PREDICTED: splicing factor 3A subunit 2 [Austrofundulus limnaeus])

HSP 1 Score: 266.544 bits (680), Expect = 3.491e-85
Identity = 130/197 (65.99%), Postives = 158/197 (80.20%), Query Frame = 0
Query:    2 SESLANADRRERLRKLALETIDLNKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQENLARRAAREAKEQQYRPN-KPTMVAARRMMKIGRPGYKVTKARDLSTRQRSLIFEIDYPQAEEDVQPRHRFMSAFEQRVESTKEREWQYLLFACEPYETIGFKIPNVEIDKGEGRFLSQWDPKARKFLLQLYFR 197
            S S +N DRRERLR+LALETID+NKDPYFM+NHLGSYECKLCLTLHNNEG+YLAHTQGK+HQ NLARRAA+EAKE   +P      V  ++ +KIGRPGYKVTK RD  T Q+SL+F+IDYP+  E + PRHRFMSA+EQR+E   +R WQYLLFA EPYETI FK+P+ EIDK E RF + W+ + ++F LQ +F+
Sbjct:   18 SASESNRDRRERLRQLALETIDINKDPYFMKNHLGSYECKLCLTLHNNEGSYLAHTQGKKHQTNLARRAAKEAKESPAQPAPAKVKVEVKKFVKIGRPGYKVTKQRDPETGQQSLLFQIDYPEIAEGIGPRHRFMSAYEQRIEPP-DRRWQYLLFAAEPYETIAFKVPSREIDKAENRFWTHWNKETKQFFLQFHFK 213          
BLAST of EWM25510.1 vs. NCBI_GenBank
Match: gi|662217681|ref|XP_008482833.1| (PREDICTED: splicing factor 3A subunit 2 [Diaphorina citri])

HSP 1 Score: 264.233 bits (674), Expect = 2.253e-84
Identity = 135/231 (58.44%), Postives = 166/231 (71.86%), Query Frame = 0
Query:    2 SESLANADRRERLRKLALETIDLNKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQENLARRAAREAKE--QQYRPNKPTMVAARRMMKIGRPGYKVTKARDLSTRQRSLIFEIDYPQAEEDVQPRHRFMSAFEQRVESTKEREWQYLLFACEPYETIGFKIPNVEIDKGEGRFLSQWDPKARKFLLQLYFR-ERGEGEAGRGASGEGGRGTPMPVASPQNGSSN 229
            S S +N DRRERLR+LALETIDLNKDPYFM+NHLGSYECKLCLTLHNNEG+YLAHTQGK+HQ NLARRAA+EAK+  QQ  P KP  V  ++ +KIGRPGY+VTK RD S  Q+SL+F++DYP+  +DV PRHRFMSA+EQR+E   +R+WQYLLFA EPYETI FK+P+ E+DKG+ +F + W+   ++F LQ  FR E         +     R    P          
Sbjct:   18 SWSESNRDRRERLRQLALETIDLNKDPYFMKNHLGSYECKLCLTLHNNEGSYLAHTQGKKHQANLARRAAKEAKDAPQQPAPEKPR-VEPKKFVKIGRPGYRVTKQRDPSNGQQSLLFQVDYPEIADDVFPRHRFMSAYEQRIEPP-DRKWQYLLFAAEPYETIAFKVPSREVDKGDTKFWTHWNKDTKQFFLQFSFRNESKPSFRPPPSPSPAIRNNLPPPPMLPPPPPP 246          
BLAST of EWM25510.1 vs. NCBI_GenBank
Match: gi|116787560|gb|ABK24557.1| (unknown [Picea sitchensis])

HSP 1 Score: 261.536 bits (667), Expect = 4.194e-83
Identity = 129/198 (65.15%), Postives = 155/198 (78.28%), Query Frame = 0
Query:   21 TIDLNKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQENLARRAAREAKE--QQYRPNKPTMVAARRMMKIGRPGYKVTKARDLSTRQRSLIFEIDYPQAEEDVQPRHRFMSAFEQRVESTKEREWQYLLFACEPYETIGFKIPNVEIDKGEGRFLSQWDPKARKFLLQLYFRERGEGEAGRGASGEGGRGT 216
            TIDL KDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQ NLA+RAAREAK+   Q +PNK   VA RR +KIGRPGY+VTK  D  T+QRSL+F+I+YP+ EE  +PRHRFMS+FEQRV++  +R +Q+LLFA EPYE I FK+P++EIDK   +F S WDP  + F LQLYF+ +   EA +GA+     GT
Sbjct:   35 TIDLAKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQTNLAKRAAREAKDAPAQPQPNK-RKVAPRRSVKIGRPGYRVTKQFDPETKQRSLLFQIEYPEIEEGSKPRHRFMSSFEQRVQAWDKR-YQFLLFAAEPYEIIAFKVPSIEIDKSTSKFFSHWDPDTKMFTLQLYFKVK-PMEANKGAAPATASGT 229          
BLAST of EWM25510.1 vs. NCBI_GenBank
Match: gi|116788201|gb|ABK24792.1| (unknown [Picea sitchensis])

HSP 1 Score: 262.307 bits (669), Expect = 1.162e-82
Identity = 129/198 (65.15%), Postives = 155/198 (78.28%), Query Frame = 0
Query:   21 TIDLNKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQENLARRAAREAKE--QQYRPNKPTMVAARRMMKIGRPGYKVTKARDLSTRQRSLIFEIDYPQAEEDVQPRHRFMSAFEQRVESTKEREWQYLLFACEPYETIGFKIPNVEIDKGEGRFLSQWDPKARKFLLQLYFRERGEGEAGRGASGEGGRGT 216
            TIDL KDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQ NLA+RAAREAK+   Q +PNK   VA RR +KIGRPGY+VTK  D  T+QRSL+F+I+YP+ EE  +PRHRFMS+FEQRV++  +R +Q+LLFA EPYE I FK+P++EIDK   +F S WDP  + F LQLYF+ +   EA +GA+     GT
Sbjct:   35 TIDLAKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQTNLAKRAAREAKDAPAQPQPNK-RKVAPRRSVKIGRPGYRVTKQFDPETKQRSLLFQIEYPEIEEGSKPRHRFMSSFEQRVQAWDKR-YQFLLFAAEPYEIIAFKVPSIEIDKSTSKFFSHWDPDTKMFTLQLYFKVK-PMEANKGAAPATASGT 229          
BLAST of EWM25510.1 vs. NCBI_GenBank
Match: gi|1191649517|gb|OTG01490.1| (putative hydroxyproline-rich glycoprotein family protein [Helianthus annuus])

HSP 1 Score: 258.455 bits (659), Expect = 9.874e-82
Identity = 128/201 (63.68%), Postives = 155/201 (77.11%), Query Frame = 0
Query:   21 TIDLNKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQENLARRAAREAKE--QQYRPNKPTMVAARRMMKIGRPGYKVTKARDLSTRQRSLIFEIDYPQAEEDVQPRHRFMSAFEQRVESTKEREWQYLLFACEPYETIGFKIPNVEIDKGEGRFLSQWDPKARKFLLQLYFRERGEGEAGRGASGEGGRGTPMP 219
            TIDL KDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQ NLA+RAAREAK+   Q  P+K T+   R+ +KIGRPGY+VTK  D  T+QRSL+F+I+YP+ E+  +PRHRFMS+FEQRVES  +R +QYLLFA EPYETIGFK+P+ EIDK   +F + WDP ++ F LQLYF+ + + E  +  S     GT  P
Sbjct:   35 TIDLAKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQTNLAKRAAREAKDAPAQPLPHKRTL-NLRKSVKIGRPGYRVTKQYDPETKQRSLLFQIEYPEIEDLTKPRHRFMSSFEQRVESFDKR-YQYLLFAAEPYETIGFKVPSTEIDKSTPKFFNHWDPDSKMFTLQLYFKVK-QPETNKPPSAAAANGTSAP 232          
The following BLAST results are available for this feature:
BLAST of EWM25510.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585107276|gb|EWM25510.1|0.000e+0100.00splicing factor 3a subunit 2 [Nannochloropsis gadi... [more]
gi|299473576|emb|CBN77971.1|6.506e-10171.72conserved unknown protein [Ectocarpus siliculosus][more]
gi|676389171|ref|XP_009037864.1|6.721e-9565.07hypothetical protein AURANDRAFT_28099 [Aureococcus... [more]
gi|551552858|ref|XP_005763774.1|2.215e-9366.83hypothetical protein EMIHUDRAFT_357810 [Emiliania ... [more]
gi|1067085317|ref|XP_018026577.1|3.843e-8659.39PREDICTED: splicing factor 3A subunit 2-like [Hyal... [more]
gi|928014226|ref|XP_013876667.1|3.491e-8565.99PREDICTED: splicing factor 3A subunit 2 [Austrofun... [more]
gi|662217681|ref|XP_008482833.1|2.253e-8458.44PREDICTED: splicing factor 3A subunit 2 [Diaphorin... [more]
gi|116787560|gb|ABK24557.1|4.194e-8365.15unknown [Picea sitchensis][more]
gi|116788201|gb|ABK24792.1|1.162e-8265.15unknown [Picea sitchensis][more]
gi|1191649517|gb|OTG01490.1|9.874e-8263.68putative hydroxyproline-rich glycoprotein family p... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5161rna5161Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications