rna5161, rna5161 (mRNA) Nannochloropsis gaditana

Overview
Namerna5161
Unique Namerna5161
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length507
Alignment locationCM002465.1:295836..296726 +

Link to JBrowse

Properties
Property NameValue
Productsplicing factor 3a subunit 2
Orig transcript idgnl|cribi|Naga_100032g12.253.mrna
Orig protein idgnl|cribi|Naga_100032g12.253
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:295836..296726 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100032g12gene4982Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5161rna5161-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25510.1cds5149Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5161 ID=rna5161|Name=rna5161|organism=Nannochloropsis gaditana|type=mRNA|length=507bp
ATGCAGCTCTTCGTGGTGTTGCCCGCTGTTGCCTTTACGGGCAAGTCCCG
CACGGTCTCACTTGAGGCGGGGCCACCTGAGTCAACGACTATTGGGGACT
TAAAGAAAGCTATTCAGGTACGCAGCGCGCAAGCGTACAAAAGCGACATC
AGGGACAGCAGCACCTTCCGTCCGAGTCTCAGGCTCGGCACAAGGAATTG
CAATGCGAGCAGCAGTAATGGAAGCGCCGTGGACAATAAAGAGCGCTTGG
GGGGAATTCCGGCAGCACTGCAGCGCTTGACTTTAGGCGGACGGCATTTG
CGGGACGACCAAACTTTGGCAGATTGTGTCATTAGCGGGAGTGTCTCTTC
TTCTCTGGGGGGCCGCCACGAGTCCTCTGGCGCCTGTCCCTTCATGGACC
TCCAAGAGCAAAGGTGTGCATTCGTGCTGGTCTATCGATGTGTTGTAAGG
AACCCCACCCGTTGCTTGTCTCGCAAGGGGCGGGAGGGGAGTCCCCAGGC
ACCATGA
back to top

protein sequence of rna5161

>rna5161-protein ID=rna5161-protein|Name=rna5161|organism=Nannochloropsis gaditana|type=polypeptide|length=296bp
MSESLANADRRERLRKLALETIDLNKDPYFMRNHLGSYECKLCLTLHNNE
GNYLAHTQGKRHQENLARRAAREAKEQQYRPNKPTMVAARRMMKIGRPGY
KVTKARDLSTRQRSLIFEIDYPQAEEDVQPRHRFMSAFEQRVESTKEREW
QYLLFACEPYETIGFKIPNVEIDKGEGRFLSQWDPKARKFLLQLYFRERG
EGEAGRGASGEGGRGTPMPVASPQNGSSNYQQGFGQEGRMQFEERRTQLP
PPPPPQHYQPQQSLGSFGQRHGHAAGYGYGGGPPPPPPPPPRHGGY
back to top

mRNA from alignment at CM002465.1:295836..296726+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5161 ID=rna5161|Name=rna5161|organism=Nannochloropsis gaditana|type=mRNA|length=891bp|location=Sequence derived from alignment at CM002465.1:295836..296726+ (Nannochloropsis gaditana)
atgTCCGAGTCCCTGGCAAATGCCGACCGGCGGGAGCGCCTGCGGAAGCT
TGCCTTGGAGACCATCGACCTAAACAAGGACCCATACTTTATGCGAAACC
ACCTAGGCTCCTACGAGTGCAAGCTCTGCCTAACCCTGCACAACAACGAG
GGGAACTACCTGGCCCATACGCAGGGGAAACGCCACCAGGAAAACTTGGC
ACggcgggcggcgcgggaAGCGAAAGAGCAGCAGTACCGGCCCAACAAGC
CTACCATGGTGGCGGCCCGACGGATGATGAAAATCGGCCGTCCAGGGTAC
AAGGTGACCAAAGCTCGGGACCTGAGCACGCGGCAGCGGTCCTTGATCTT
CGAGATCGATTACccgcaggcggaggaggacgtgcaaCCGCGGCACCGCT
TCATGTCTGCCTTCGAACAGCGGGTGGAGAGCACCAAGGAGCGGGAGTGG
CAGTACCTATTGTTCGCCTGTGAACCCTACGAGACGATCGGGTTCAAGAT
TCCGAACGTGGAGATCGataagggagaagggaggtttCTCTCTCAGTGGG
ACCCGAAGGCTCGCAAGTTCTTGCTGCAATTGTATTTCcgagagagaggc
gagggagaggcgggaagaggggcaagcggggaaggagggaggggcacacC
CATGCCGGTGGCGTCGCCCCAGAATGGCAGCTCAAATTACCAGCAAGGCT
TCggacaggaggggcggaTGCAATTCGAGGAGAGACGGACACagctgcct
cccccccctccaccgcagCATTACCAACCTCAACAGAGCTTGGGGTCCTT
TGGACAGCGGCATGGCCACGCTGCTGGCTACGGCTATGGGGGAggacctc
cgcccccacctcctcctcctccgcggcacGGTGGGTACTGA
back to top

Coding sequence (CDS) from alignment at CM002465.1:295836..296726+

>rna5161 ID=rna5161|Name=rna5161|organism=Nannochloropsis gaditana|type=CDS|length=891bp|location=Sequence derived from alignment at CM002465.1:295836..296726+ (Nannochloropsis gaditana)
atgTCCGAGTCCCTGGCAAATGCCGACCGGCGGGAGCGCCTGCGGAAGCT
TGCCTTGGAGACCATCGACCTAAACAAGGACCCATACTTTATGCGAAACC
ACCTAGGCTCCTACGAGTGCAAGCTCTGCCTAACCCTGCACAACAACGAG
GGGAACTACCTGGCCCATACGCAGGGGAAACGCCACCAGGAAAACTTGGC
ACggcgggcggcgcgggaAGCGAAAGAGCAGCAGTACCGGCCCAACAAGC
CTACCATGGTGGCGGCCCGACGGATGATGAAAATCGGCCGTCCAGGGTAC
AAGGTGACCAAAGCTCGGGACCTGAGCACGCGGCAGCGGTCCTTGATCTT
CGAGATCGATTACccgcaggcggaggaggacgtgcaaCCGCGGCACCGCT
TCATGTCTGCCTTCGAACAGCGGGTGGAGAGCACCAAGGAGCGGGAGTGG
CAGTACCTATTGTTCGCCTGTGAACCCTACGAGACGATCGGGTTCAAGAT
TCCGAACGTGGAGATCGataagggagaagggaggtttCTCTCTCAGTGGG
ACCCGAAGGCTCGCAAGTTCTTGCTGCAATTGTATTTCcgagagagaggc
gagggagaggcgggaagaggggcaagcggggaaggagggaggggcacacC
CATGCCGGTGGCGTCGCCCCAGAATGGCAGCTCAAATTACCAGCAAGGCT
TCggacaggaggggcggaTGCAATTCGAGGAGAGACGGACACagctgcct
cccccccctccaccgcagCATTACCAACCTCAACAGAGCTTGGGGTCCTT
TGGACAGCGGCATGGCCACGCTGCTGGCTACGGCTATGGGGGAggacctc
cgcccccacctcctcctcctccgcggcacGGTGGGTACTGA
back to top
Synonyms
Publications