EWM25510.1, cds5149 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM25510.1 vs. NCBI_GenBank
Match: gi|585107276|gb|EWM25510.1| (splicing factor 3a subunit 2 [Nannochloropsis gaditana]) HSP 1 Score: 608.986 bits (1569), Expect = 0.000e+0 Identity = 296/296 (100.00%), Postives = 296/296 (100.00%), Query Frame = 0 Query: 1 MSESLANADRRERLRKLALETIDLNKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQENLARRAAREAKEQQYRPNKPTMVAARRMMKIGRPGYKVTKARDLSTRQRSLIFEIDYPQAEEDVQPRHRFMSAFEQRVESTKEREWQYLLFACEPYETIGFKIPNVEIDKGEGRFLSQWDPKARKFLLQLYFRERGEGEAGRGASGEGGRGTPMPVASPQNGSSNYQQGFGQEGRMQFEERRTQLPPPPPPQHYQPQQSLGSFGQRHGHAAGYGYGGGPPPPPPPPPRHGGY 296 MSESLANADRRERLRKLALETIDLNKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQENLARRAAREAKEQQYRPNKPTMVAARRMMKIGRPGYKVTKARDLSTRQRSLIFEIDYPQAEEDVQPRHRFMSAFEQRVESTKEREWQYLLFACEPYETIGFKIPNVEIDKGEGRFLSQWDPKARKFLLQLYFRERGEGEAGRGASGEGGRGTPMPVASPQNGSSNYQQGFGQEGRMQFEERRTQLPPPPPPQHYQPQQSLGSFGQRHGHAAGYGYGGGPPPPPPPPPRHGGY Sbjct: 1 MSESLANADRRERLRKLALETIDLNKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQENLARRAAREAKEQQYRPNKPTMVAARRMMKIGRPGYKVTKARDLSTRQRSLIFEIDYPQAEEDVQPRHRFMSAFEQRVESTKEREWQYLLFACEPYETIGFKIPNVEIDKGEGRFLSQWDPKARKFLLQLYFRERGEGEAGRGASGEGGRGTPMPVASPQNGSSNYQQGFGQEGRMQFEERRTQLPPPPPPQHYQPQQSLGSFGQRHGHAAGYGYGGGPPPPPPPPPRHGGY 296
BLAST of EWM25510.1 vs. NCBI_GenBank
Match: gi|299473576|emb|CBN77971.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 306.605 bits (784), Expect = 6.506e-101 Identity = 142/198 (71.72%), Postives = 167/198 (84.34%), Query Frame = 0 Query: 1 MSESLANADRRERLRKLALETIDLNKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQENLARRAAREAKEQQYRPNKPTMVAARRMMKIGRPGYKVTKARDLSTRQRSLIFEIDYPQAEEDVQPRHRFMSAFEQRVESTKEREWQYLLFACEPYETIGFKIPNVEIDKGEGRFLSQWDPKARKFLLQLYFRE 198 MSE A DRRERLRKLA ET+DLNKDPYFMRNHLG YECKLCLTLHNNEGNYLAHTQGKRHQ+NLARRAA EAK +P V R ++KIGRPGYKVTKARDLS+ QRSL+FE+DYP+AE+ QPRHRFMSA+EQ+VE+ ++ +QYLLFAC+PYETIGFK+PN++IDK EGRF + W+ +A+KF LQLYF + Sbjct: 96 MSEGQAAVDRRERLRKLAQETVDLNKDPYFMRNHLGKYECKLCLTLHNNEGNYLAHTQGKRHQQNLARRAAMEAKNALVKPQPAITVQTRNVIKIGRPGYKVTKARDLSSNQRSLLFEVDYPEAEDGAQPRHRFMSAYEQKVEAP-DKGYQYLLFACDPYETIGFKVPNLKIDKQEGRFFTNWEKEAKKFTLQLYFED 292
BLAST of EWM25510.1 vs. NCBI_GenBank
Match: gi|676389171|ref|XP_009037864.1| (hypothetical protein AURANDRAFT_28099 [Aureococcus anophagefferens] >gi|323451351|gb|EGB07228.1| hypothetical protein AURANDRAFT_28099 [Aureococcus anophagefferens]) HSP 1 Score: 289.271 bits (739), Expect = 6.721e-95 Identity = 136/209 (65.07%), Postives = 162/209 (77.51%), Query Frame = 0 Query: 2 SESLANADRRERLRKLALETIDLNKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQENLARRAAREAKEQQYRPNKPTMVAARRMMKIGRPGYKVTKARDLSTRQRSLIFEIDYPQAEEDVQPRHRFMSAFEQRVESTKEREWQYLLFACEPYETIGFKIPNVEIDKGEGRFLSQWDPKARKFLLQLYFRERGEGEAGRGASG 210 S AN DRRERLRKLALET+DLNKDPYFMRNHLG+YECKLCLTLHN EGNYLAHTQGKRHQ+NLARRA +EA++ P V R +KIGRPGYKVTK+RD +T QR L+FE+DYP+A++ QPRHRFMSA+EQRVE ++ +QYLLFACEPYETIGFKIPN ++DK +GRF + WD +KF L L F + + + AS Sbjct: 18 SSEQANVDRRERLRKLALETVDLNKDPYFMRNHLGTYECKLCLTLHNTEGNYLAHTQGKRHQQNLARRAFKEARDAPIAPAATRYVEKRHTIKIGRPGYKVTKSRDAATSQRCLLFEVDYPEADDASQPRHRFMSAYEQRVEPP-DKAYQYLLFACEPYETIGFKIPNHDVDKDQGRFFTNWDVVGKKFTLSLQFDDDAKPAPAQAASA 225
BLAST of EWM25510.1 vs. NCBI_GenBank
Match: gi|551552858|ref|XP_005763774.1| (hypothetical protein EMIHUDRAFT_357810 [Emiliania huxleyi CCMP1516] >gi|485613258|gb|EOD11345.1| hypothetical protein EMIHUDRAFT_357810 [Emiliania huxleyi CCMP1516]) HSP 1 Score: 285.419 bits (729), Expect = 2.215e-93 Identity = 137/205 (66.83%), Postives = 162/205 (79.02%), Query Frame = 0 Query: 2 SESLANADRRERLRKLALETIDLNKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQENLARRAAREAKEQQYRPNKPT-MVAARRMMKIGRPGYKVTKARDLSTRQRSLIFEIDYPQAEEDVQPRHRFMSAFEQRVESTKEREWQYLLFACEPYETIGFKIPNVEIDKGEGRFLSQWDPKARKFLLQLYFRERGEGEAG 205 S+ A DRRERLR+LAL+T+DL KDPYFM+NHLGSYECKLCLTLHNNEGNYLAHTQGKRHQ+NLARRAA+EA P + V AR+ +KIGRPGY+VTK D T+QRSL+FE+DYP+ EE +QPRHRFMSAFEQRVE ++EWQYLL A EPYET+ FKIPN EIDK G+F S W+ + + F +QLYF+ GEG G Sbjct: 19 SDIQAKVDRRERLRQLALQTVDLMKDPYFMKNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQQNLARRAAKEALNNPTLPQANSRTVKARKTVKIGRPGYRVTKQLDPETQQRSLLFEVDYPEIEESLQPRHRFMSAFEQRVEPP-DKEWQYLLVAAEPYETVAFKIPNTEIDKAHGKFHSAWNDETKTFTVQLYFKAGGEGPHG 222
BLAST of EWM25510.1 vs. NCBI_GenBank
Match: gi|1067085317|ref|XP_018026577.1| (PREDICTED: splicing factor 3A subunit 2-like [Hyalella azteca] >gi|1067085319|ref|XP_018026578.1| PREDICTED: splicing factor 3A subunit 2-like [Hyalella azteca]) HSP 1 Score: 272.322 bits (695), Expect = 3.843e-86 Identity = 136/229 (59.39%), Postives = 169/229 (73.80%), Query Frame = 0 Query: 2 SESLANADRRERLRKLALETIDLNKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQENLARRAAREAKEQQYRPN-KPTMVAARRMMKIGRPGYKVTKARDLSTRQRSLIFEIDYPQAEEDVQPRHRFMSAFEQRVESTKEREWQYLLFACEPYETIGFKIPNVEIDKGEGRFLSQWDPKARKFLLQLYFRERGEGEAGR-------GASGEGGRGTPMPVAS 222 S S +N DRRERLR+LALETIDLNKDPYFM+NHLGSYECKLCLTLHNNEG+YLAHTQGK+HQ NLARRAA+EAKE +P + V ++ +KIGRPGY+VTK RD Q+SL+F++DYP+ E + PRHRFMSA+EQ+VE +R+WQYLLFA EPYETI FK+P+ E+DKGE RF + W+ + ++F LQ F+ + + S GG G P P AS Sbjct: 18 SWSESNKDRRERLRQLALETIDLNKDPYFMKNHLGSYECKLCLTLHNNEGSYLAHTQGKKHQTNLARRAAKEAKEAPTQPAPEKARVELKKFVKIGRPGYRVTKQRDPENGQQSLLFQVDYPEIGEGIAPRHRFMSAYEQKVEPP-DRKWQYLLFAAEPYETIAFKVPSREVDKGENRFWTLWNKETKQFFLQFSFKIDPKAKLVPPGPPPPITISSSGGPGHPPPAAS 245
BLAST of EWM25510.1 vs. NCBI_GenBank
Match: gi|928014226|ref|XP_013876667.1| (PREDICTED: splicing factor 3A subunit 2 [Austrofundulus limnaeus] >gi|928014229|ref|XP_013876673.1| PREDICTED: splicing factor 3A subunit 2 [Austrofundulus limnaeus]) HSP 1 Score: 266.544 bits (680), Expect = 3.491e-85 Identity = 130/197 (65.99%), Postives = 158/197 (80.20%), Query Frame = 0 Query: 2 SESLANADRRERLRKLALETIDLNKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQENLARRAAREAKEQQYRPN-KPTMVAARRMMKIGRPGYKVTKARDLSTRQRSLIFEIDYPQAEEDVQPRHRFMSAFEQRVESTKEREWQYLLFACEPYETIGFKIPNVEIDKGEGRFLSQWDPKARKFLLQLYFR 197 S S +N DRRERLR+LALETID+NKDPYFM+NHLGSYECKLCLTLHNNEG+YLAHTQGK+HQ NLARRAA+EAKE +P V ++ +KIGRPGYKVTK RD T Q+SL+F+IDYP+ E + PRHRFMSA+EQR+E +R WQYLLFA EPYETI FK+P+ EIDK E RF + W+ + ++F LQ +F+ Sbjct: 18 SASESNRDRRERLRQLALETIDINKDPYFMKNHLGSYECKLCLTLHNNEGSYLAHTQGKKHQTNLARRAAKEAKESPAQPAPAKVKVEVKKFVKIGRPGYKVTKQRDPETGQQSLLFQIDYPEIAEGIGPRHRFMSAYEQRIEPP-DRRWQYLLFAAEPYETIAFKVPSREIDKAENRFWTHWNKETKQFFLQFHFK 213
BLAST of EWM25510.1 vs. NCBI_GenBank
Match: gi|662217681|ref|XP_008482833.1| (PREDICTED: splicing factor 3A subunit 2 [Diaphorina citri]) HSP 1 Score: 264.233 bits (674), Expect = 2.253e-84 Identity = 135/231 (58.44%), Postives = 166/231 (71.86%), Query Frame = 0 Query: 2 SESLANADRRERLRKLALETIDLNKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQENLARRAAREAKE--QQYRPNKPTMVAARRMMKIGRPGYKVTKARDLSTRQRSLIFEIDYPQAEEDVQPRHRFMSAFEQRVESTKEREWQYLLFACEPYETIGFKIPNVEIDKGEGRFLSQWDPKARKFLLQLYFR-ERGEGEAGRGASGEGGRGTPMPVASPQNGSSN 229 S S +N DRRERLR+LALETIDLNKDPYFM+NHLGSYECKLCLTLHNNEG+YLAHTQGK+HQ NLARRAA+EAK+ QQ P KP V ++ +KIGRPGY+VTK RD S Q+SL+F++DYP+ +DV PRHRFMSA+EQR+E +R+WQYLLFA EPYETI FK+P+ E+DKG+ +F + W+ ++F LQ FR E + R P Sbjct: 18 SWSESNRDRRERLRQLALETIDLNKDPYFMKNHLGSYECKLCLTLHNNEGSYLAHTQGKKHQANLARRAAKEAKDAPQQPAPEKPR-VEPKKFVKIGRPGYRVTKQRDPSNGQQSLLFQVDYPEIADDVFPRHRFMSAYEQRIEPP-DRKWQYLLFAAEPYETIAFKVPSREVDKGDTKFWTHWNKDTKQFFLQFSFRNESKPSFRPPPSPSPAIRNNLPPPPMLPPPPPP 246
BLAST of EWM25510.1 vs. NCBI_GenBank
Match: gi|116787560|gb|ABK24557.1| (unknown [Picea sitchensis]) HSP 1 Score: 261.536 bits (667), Expect = 4.194e-83 Identity = 129/198 (65.15%), Postives = 155/198 (78.28%), Query Frame = 0 Query: 21 TIDLNKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQENLARRAAREAKE--QQYRPNKPTMVAARRMMKIGRPGYKVTKARDLSTRQRSLIFEIDYPQAEEDVQPRHRFMSAFEQRVESTKEREWQYLLFACEPYETIGFKIPNVEIDKGEGRFLSQWDPKARKFLLQLYFRERGEGEAGRGASGEGGRGT 216 TIDL KDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQ NLA+RAAREAK+ Q +PNK VA RR +KIGRPGY+VTK D T+QRSL+F+I+YP+ EE +PRHRFMS+FEQRV++ +R +Q+LLFA EPYE I FK+P++EIDK +F S WDP + F LQLYF+ + EA +GA+ GT Sbjct: 35 TIDLAKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQTNLAKRAAREAKDAPAQPQPNK-RKVAPRRSVKIGRPGYRVTKQFDPETKQRSLLFQIEYPEIEEGSKPRHRFMSSFEQRVQAWDKR-YQFLLFAAEPYEIIAFKVPSIEIDKSTSKFFSHWDPDTKMFTLQLYFKVK-PMEANKGAAPATASGT 229
BLAST of EWM25510.1 vs. NCBI_GenBank
Match: gi|116788201|gb|ABK24792.1| (unknown [Picea sitchensis]) HSP 1 Score: 262.307 bits (669), Expect = 1.162e-82 Identity = 129/198 (65.15%), Postives = 155/198 (78.28%), Query Frame = 0 Query: 21 TIDLNKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQENLARRAAREAKE--QQYRPNKPTMVAARRMMKIGRPGYKVTKARDLSTRQRSLIFEIDYPQAEEDVQPRHRFMSAFEQRVESTKEREWQYLLFACEPYETIGFKIPNVEIDKGEGRFLSQWDPKARKFLLQLYFRERGEGEAGRGASGEGGRGT 216 TIDL KDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQ NLA+RAAREAK+ Q +PNK VA RR +KIGRPGY+VTK D T+QRSL+F+I+YP+ EE +PRHRFMS+FEQRV++ +R +Q+LLFA EPYE I FK+P++EIDK +F S WDP + F LQLYF+ + EA +GA+ GT Sbjct: 35 TIDLAKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQTNLAKRAAREAKDAPAQPQPNK-RKVAPRRSVKIGRPGYRVTKQFDPETKQRSLLFQIEYPEIEEGSKPRHRFMSSFEQRVQAWDKR-YQFLLFAAEPYEIIAFKVPSIEIDKSTSKFFSHWDPDTKMFTLQLYFKVK-PMEANKGAAPATASGT 229
BLAST of EWM25510.1 vs. NCBI_GenBank
Match: gi|1191649517|gb|OTG01490.1| (putative hydroxyproline-rich glycoprotein family protein [Helianthus annuus]) HSP 1 Score: 258.455 bits (659), Expect = 9.874e-82 Identity = 128/201 (63.68%), Postives = 155/201 (77.11%), Query Frame = 0 Query: 21 TIDLNKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQENLARRAAREAKE--QQYRPNKPTMVAARRMMKIGRPGYKVTKARDLSTRQRSLIFEIDYPQAEEDVQPRHRFMSAFEQRVESTKEREWQYLLFACEPYETIGFKIPNVEIDKGEGRFLSQWDPKARKFLLQLYFRERGEGEAGRGASGEGGRGTPMP 219 TIDL KDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQ NLA+RAAREAK+ Q P+K T+ R+ +KIGRPGY+VTK D T+QRSL+F+I+YP+ E+ +PRHRFMS+FEQRVES +R +QYLLFA EPYETIGFK+P+ EIDK +F + WDP ++ F LQLYF+ + + E + S GT P Sbjct: 35 TIDLAKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQTNLAKRAAREAKDAPAQPLPHKRTL-NLRKSVKIGRPGYRVTKQYDPETKQRSLLFQIEYPEIEDLTKPRHRFMSSFEQRVESFDKR-YQYLLFAAEPYETIGFKVPSTEIDKSTPKFFNHWDPDSKMFTLQLYFKVK-QPETNKPPSAAAANGTSAP 232 The following BLAST results are available for this feature:
BLAST of EWM25510.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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