EWM25540.1, cds5130 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM25540.1 vs. NCBI_GenBank
Match: gi|585107310|gb|EWM25540.1| (zinc finger ran-binding domain-containing protein 3 [Nannochloropsis gaditana]) HSP 1 Score: 611.683 bits (1576), Expect = 0.000e+0 Identity = 300/300 (100.00%), Postives = 300/300 (100.00%), Query Frame = 0 Query: 1 MSVPPASGGEPNSDAFRSSLLSDQFYRRLMPFQRDGIAFGIKAQGRVLLADEMGLGKTLQAIGIMLHFHTDFPALVVLPSSVKFSWANELERWTKLNPKRIKMVRSRADVEALRDADVVLVTYGMLSATAPVVEALQRARPHVVVLDESHSIKNQNSLRNQLLSPILKQAKRVILLSGTPALARPVELYPQLSAIAPSLFGTYLEYARRFCNAHQGRFGWDVSGASNVAELHVKLQVSDVSLLGRPRPGRFSSSRFLRVGLAFWEPPRRALDTVKGVVQQAGRRSDRSNECPLLCLCSVY 300 MSVPPASGGEPNSDAFRSSLLSDQFYRRLMPFQRDGIAFGIKAQGRVLLADEMGLGKTLQAIGIMLHFHTDFPALVVLPSSVKFSWANELERWTKLNPKRIKMVRSRADVEALRDADVVLVTYGMLSATAPVVEALQRARPHVVVLDESHSIKNQNSLRNQLLSPILKQAKRVILLSGTPALARPVELYPQLSAIAPSLFGTYLEYARRFCNAHQGRFGWDVSGASNVAELHVKLQVSDVSLLGRPRPGRFSSSRFLRVGLAFWEPPRRALDTVKGVVQQAGRRSDRSNECPLLCLCSVY Sbjct: 1 MSVPPASGGEPNSDAFRSSLLSDQFYRRLMPFQRDGIAFGIKAQGRVLLADEMGLGKTLQAIGIMLHFHTDFPALVVLPSSVKFSWANELERWTKLNPKRIKMVRSRADVEALRDADVVLVTYGMLSATAPVVEALQRARPHVVVLDESHSIKNQNSLRNQLLSPILKQAKRVILLSGTPALARPVELYPQLSAIAPSLFGTYLEYARRFCNAHQGRFGWDVSGASNVAELHVKLQVSDVSLLGRPRPGRFSSSRFLRVGLAFWEPPRRALDTVKGVVQQAGRRSDRSNECPLLCLCSVY 300
BLAST of EWM25540.1 vs. NCBI_GenBank
Match: gi|553179956|ref|XP_005852794.1| (zinc finger ran-binding domain-containing protein 3, partial [Nannochloropsis gaditana CCMP526] >gi|422295740|gb|EKU23039.1| zinc finger ran-binding domain-containing protein 3, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 484.567 bits (1246), Expect = 2.474e-166 Identity = 237/241 (98.34%), Postives = 238/241 (98.76%), Query Frame = 0 Query: 1 MSVPPASGGEPNSDAFRSSLLSDQFYRRLMPFQRDGIAFGIKAQGRVLLADEMGLGKTLQAIGIMLHFHTDFPALVVLPSSVKFSWANELERWTKLNPKRIKMVRSRADVEALRDADVVLVTYGMLSATAPVVEALQRARPHVVVLDESHSIKNQNSLRNQLLSPILKQAKRVILLSGTPALARPVELYPQLSAIAPSLFGTYLEYARRFCNAHQGRFGWDVSGASNVAELHVKLQVSDVS 241 MSVPPASGGEPNSDAFRSSLLSDQFYRRLMPFQRDGIAFGIKAQGRVLLADEMGLGKTLQAIGIMLHFHTDFPALVVLPSSVKFSWANELERWTKLNPKRIKMVRSRADVEALRDADVVLVTYGMLSATAPVVEALQRARPHVVVLDESHSIKNQNSLRNQLLSPILKQAKRVILLSGTPALARPVELYPQLSAIAPSLFGTYLEYARRFCNAHQGRFGWDVSGASNVAELHVKLQ+ S Sbjct: 1 MSVPPASGGEPNSDAFRSSLLSDQFYRRLMPFQRDGIAFGIKAQGRVLLADEMGLGKTLQAIGIMLHFHTDFPALVVLPSSVKFSWANELERWTKLNPKRIKMVRSRADVEALRDADVVLVTYGMLSATAPVVEALQRARPHVVVLDESHSIKNQNSLRNQLLSPILKQAKRVILLSGTPALARPVELYPQLSAIAPSLFGTYLEYARRFCNAHQGRFGWDVSGASNVAELHVKLQIVKAS 241
BLAST of EWM25540.1 vs. NCBI_GenBank
Match: gi|676380483|ref|XP_009033520.1| (hypothetical protein AURANDRAFT_1193, partial [Aureococcus anophagefferens] >gi|323455831|gb|EGB11699.1| hypothetical protein AURANDRAFT_1193, partial [Aureococcus anophagefferens]) HSP 1 Score: 224.557 bits (571), Expect = 1.048e-66 Identity = 105/211 (49.76%), Postives = 156/211 (73.93%), Query Frame = 0 Query: 28 RLMPFQRDGIAFGIKAQGRVLLADEMGLGKTLQAIGIMLHFHTDFPALVVLPSSVKFSWANELERWT-KLNPKRIKMVRSRADVEAL--RDADVVLVTYGMLSATAPVVEALQRARPHVVVLDESHSIKNQNSLRNQLLSPILKQAKRVILLSGTPALARPVELYPQLSAIAPSLFGTYLEYARRFCNAHQGRFGWDVSGASNVAELHVKL 235 +L+ FQR+G+AFG++A+GRVL+ADEMG GK+ QAI + LH+ ++PAL+V P+S++++WA+ELE+W L P I + + R+D EA+ + +VT + + ++ V +A++ + VVV+DESH ++ ++S R +LL PI+K A R++LLSGTPALARPVEL+ Q+ AI FGTY ++ +R+C +GRFGWDVSGASNV ELH KL Sbjct: 4 KLLKFQREGVAFGLRAKGRVLIADEMGCGKSAQAIRLCLHYFAEWPALIVCPASLRYTWAHELEKWLPTLAPSEISVAKGRSDKEAVCRKGIKFCIVTQSLFTESSGVAKAVEDRKFQVVVVDESHGLRTRDSQRTKLLLPIMKAAPRLVLLSGTPALARPVELFSQVHAIDGDAFGTYNKFTKRYCAPFKGRFGWDVSGASNVEELHGKL 214
BLAST of EWM25540.1 vs. NCBI_GenBank
Match: gi|1126219542|ref|XP_019643922.1| (PREDICTED: DNA annealing helicase and endonuclease ZRANB3-like [Branchiostoma belcheri]) HSP 1 Score: 231.106 bits (588), Expect = 4.838e-65 Identity = 107/215 (49.77%), Postives = 152/215 (70.70%), Query Frame = 0 Query: 28 RLMPFQRDGIAFGIKAQGRVLLADEMGLGKTLQAIGIMLHFHTDFPALVVLPSSVKFSWANELERWT-KLNPKRIKMVRSRADVEALRDADVVLVTYGMLS-ATAPVVEALQRARPHVVVLDESHSIKNQNSLRNQLLSPILKQAKRVILLSGTPALARPVELYPQLSAIAPSLFGTYLEYARRFCNAHQ---GRF-GWDVSGASNVAELHVKLQ 236 +LMPFQR+G+ F +K GR L+ DEMGLGKTLQAI + H+ ++P LVV+PSS+++ W ELERW L P I +V SR D+ + A V ++ YG++ P+V+AL V+++DESH +KN+ ++R Q L P++K AKR +LL+GTPALARP EL+PQ+ A+ P FG++ ++++R+CNAHQ GRF WD +GASN+AELH LQ Sbjct: 31 KLMPFQREGVKFALKKNGRCLIGDEMGLGKTLQAIAVAYHYRQEWPVLVVVPSSLRYQWVEELERWVPDLEPTHIHVVSSRDDIRNISTAQVTILGYGLIQRQDQPLVKALHDQNFQVIIVDESHYLKNRKAVRTQGLVPLVKNAKRALLLTGTPALARPAELFPQVDALLPGKFGSWTKFSKRYCNAHQVFYGRFPRWDTNGASNLAELHSNLQ 245
BLAST of EWM25540.1 vs. NCBI_GenBank
Match: gi|961722398|ref|XP_014921461.1| (PREDICTED: DNA annealing helicase and endonuclease ZRANB3, partial [Acinonyx jubatus]) HSP 1 Score: 221.09 bits (562), Expect = 9.464e-65 Identity = 103/237 (43.46%), Postives = 161/237 (67.93%), Query Frame = 0 Query: 2 SVPPASGGEPNSDAFRSSLLSDQFYRRLMPFQRDGIAFGIKAQGRVLLADEMGLGKTLQAIGIMLHFHTDFPALVVLPSSVKFSWANELERWT-KLNPKRIKMVRSRADVEALRDADVVLVTYGMLSATAP-VVEALQRARPHVVVLDESHSIKNQNSLRNQLLSPILKQAKRVILLSGTPALARPVELYPQLSAIAPSLFGTYLEYARRFCNAHQGRFG----WDVSGASNVAELH 232 S+PP + N + L D+ +L+PFQ+DGIAF ++ GR ++ADEMGLGKT+QAI I + ++P L+V+PSS+++ W E+E+W +L+P+ I +++++ D+ + + V ++ YG+L+ A ++ AL VV++DESH +K++N+ R+++L PI++ AKR ILL+GTPAL RP EL+ Q+ A+ P FGT+ EYA+R+CNAH FG WD GASN+ ELH Sbjct: 11 SLPPQNSCLTNESCKQLDFLPDKLRAKLLPFQKDGIAFALRRDGRCMVADEMGLGKTIQAIAIAYFYKEEWPLLIVVPSSLRYPWTEEMEKWIPELSPEDINVIQNKTDIGRISTSKVTILGYGLLTTDAETLICALNNQNFKVVIVDESHYMKSRNATRSKILLPIVQTAKRAILLTGTPALGRPEELFMQIEALFPQKFGTWTEYAKRYCNAHMRFFGKRPQWDYRGASNLNELH 247
BLAST of EWM25540.1 vs. NCBI_GenBank
Match: gi|657580259|ref|XP_008294085.1| (PREDICTED: DNA annealing helicase and endonuclease ZRANB3 [Stegastes partitus]) HSP 1 Score: 229.565 bits (584), Expect = 1.368e-64 Identity = 110/223 (49.33%), Postives = 156/223 (69.96%), Query Frame = 0 Query: 19 SLLSDQFYRRLMPFQRDGIAFGIKAQGRVLLADEMGLGKTLQAIGIMLHFHTDFPALVVLPSSVKFSWANELERWT-KLNPKRIKMVRSRADVEALRDADVVLVTYGMLSATA-PVVEALQRARPHVVVLDESHSIKNQNSLRNQLLSPILKQAKRVILLSGTPALARPVELYPQLSAIAPSLFGTYLEYARRFCNAHQGRFG----WDVSGASNVAELHVKL 235 S L + +RLMPFQR+G+ F + GR ++ADEMGLGKT+QAI + F ++P LVV+PSS+K+ W ELERW +L P I +V S++D +R + V ++ YG+L+ A P+VEAL R R VVV+DESH +K++N+ R ++L P++K AKR +LL+GTPAL RP EL+ Q+ A+ P FGT+ +YA+++CNAH FG WD GASN+ ELH +L Sbjct: 35 SGLPHKLLQRLMPFQREGVEFALSKNGRCMIADEMGLGKTVQAIAVAYAFRQEWPLLVVVPSSLKYPWIEELERWIPELQPGDINLVESKSDTMGIRGSKVTVLGYGLLTTDARPLVEALSRQRFAVVVVDESHYLKSRNAARTKILVPLIKSAKRAVLLTGTPALGRPEELFMQIDALYPKSFGTWTDYAKKYCNAHYRCFGPRRLWDCRGASNLQELHQRL 257
BLAST of EWM25540.1 vs. NCBI_GenBank
Match: gi|1199361625|ref|XP_021176764.1| (DNA annealing helicase and endonuclease ZRANB3 [Fundulus heteroclitus]) HSP 1 Score: 227.639 bits (579), Expect = 5.856e-64 Identity = 114/241 (47.30%), Postives = 163/241 (67.63%), Query Frame = 0 Query: 4 PPASGGEPNSDAFRSSLLSD---QFYRRLMPFQRDGIAFGIKAQGRVLLADEMGLGKTLQAIGIMLHFHTDFPALVVLPSSVKFSWANELERWT-KLNPKRIKMVRSRADVEALRDADVVLVTYGMLSATA-PVVEALQRARPHVVVLDESHSIKNQNSLRNQLLSPILKQAKRVILLSGTPALARPVELYPQLSAIAPSLFGTYLEYARRFCNAHQGRFG----WDVSGASNVAELHVKL 235 PP S + D RS LS+ + +RLMPFQR+G+ F + GR ++ADEMGLGKT+QAI + + ++P LVV+PSS+K+ W ELERW +L P+ I +V S++ + + V ++ YG+L+ A P+VEAL R R VVVLDESH +K++N+ R ++L P+++ AKR ILL+GTPAL RP EL+ Q+ A+ P FGT+ +YA+++CNAH FG WD GASN+ ELH +L Sbjct: 6 PPTS----DCDTRRSKQLSELPPKLLQRLMPFQREGVEFALSKGGRCMIADEMGLGKTVQAIAVACAYRQEWPLLVVVPSSLKYPWIEELERWIPELQPRDINLVESKSHTMGISSSKVTVLGYGLLTTDARPLVEALSRQRFAVVVLDESHYLKSRNAARTKILVPLIQSAKRAILLTGTPALGRPEELFMQIDALYPRRFGTWTDYAKKYCNAHYRYFGHRRQWDCRGASNLKELHQRL 242
BLAST of EWM25540.1 vs. NCBI_GenBank
Match: gi|942193613|ref|XP_006006236.2| (PREDICTED: DNA annealing helicase and endonuclease ZRANB3-like, partial [Latimeria chalumnae]) HSP 1 Score: 210.69 bits (535), Expect = 1.566e-63 Identity = 96/222 (43.24%), Postives = 155/222 (69.82%), Query Frame = 0 Query: 20 LLSDQFYRRLMPFQRDGIAFGIKAQGRVLLADEMGLGKTLQAIGIMLHFHTDFPALVVLPSSVKFSWANELERWT-KLNPKRIKMVRSRADVEALRDADVVLVTYGMLSATA-PVVEALQRARPHVVVLDESHSIKNQNSLRNQLLSPILKQAKRVILLSGTPALARPVELYPQLSAIAPSLFGTYLEYARRFCNAHQGRFG----WDVSGASNVAELHVKL 235 LL ++ +RL+PFQR+G+ F ++ GR ++ADEMGLGKT+QAI + + ++P L+++PSS+K+ W E+E+W +LNP ++ ++ D+ + + V ++ YG+L+ A +V+AL + VV++DESH +K++N+ R+++L PI++ A R ILL+GTPAL+RP EL+ Q+ A+ P FGT+ YA+++CNAH FG WD GASN+ ELH +L Sbjct: 27 LLPEKLRQRLLPFQREGVRFALEKAGRCMIADEMGLGKTIQAIAVACFYREEWPLLIIVPSSLKYPWIEEMEKWVPELNPDDFNLIENKTDIGKIPTSKVTILGYGLLTTDARMLVDALCKQNFEVVIVDESHYMKSRNAARSKILVPIVQNASRAILLTGTPALSRPEELFMQIDALYPRRFGTWSSYAKQYCNAHVRYFGKRVQWDCKGASNLDELHKRL 248
BLAST of EWM25540.1 vs. NCBI_GenBank
Match: gi|343960649|dbj|BAK61914.1| (zinc finger RAN-binding domain-containing protein 3 [Pan troglodytes]) HSP 1 Score: 218.009 bits (554), Expect = 1.587e-63 Identity = 100/220 (45.45%), Postives = 157/220 (71.36%), Query Frame = 0 Query: 19 SLLSDQFYRRLMPFQRDGIAFGIKAQGRVLLADEMGLGKTLQAIGIMLHFHTDFPALVVLPSSVKFSWANELERWT-KLNPKRIKMVRSRADVEALRDADVVLVTYGMLSATAP-VVEALQRARPHVVVLDESHSIKNQNSLRNQLLSPILKQAKRVILLSGTPALARPVELYPQLSAIAPSLFGTYLEYARRFCNAHQGRFG----WDVSGASNVAELH 232 L D+ +L+PFQ+DGI F +K GR ++ADEMGLGKT+QAIGI + ++P L+V+PSS+++ W E+E+W +L+P+ I +++++ADV + + V ++ YG+L+A A +++AL VV++DESH +K++N+ R+++L PI+++A+R ILL+GTPAL RP EL+ Q+ A+ P FG + +YA+R+CNAH FG WD GASN+ ELH Sbjct: 27 DFLPDRLRAKLLPFQKDGIIFALKRNGRCMVADEMGLGKTIQAIGITYFYKEEWPLLIVVPSSLRYPWTEEIEKWIPELSPEEINVIQNKADVRRMSTSKVTVLGYGLLTADAKTLIDALNNQNFKVVIVDESHYMKSRNATRSRILLPIVQKARRAILLTGTPALGRPEELFMQIEALFPQKFGRWTDYAKRYCNAHIRYFGKRPQWDCRGASNLNELH 246
BLAST of EWM25540.1 vs. NCBI_GenBank
Match: gi|929263261|ref|XP_014008120.1| (PREDICTED: DNA annealing helicase and endonuclease ZRANB3-like isoform X2 [Salmo salar]) HSP 1 Score: 225.713 bits (574), Expect = 2.239e-63 Identity = 104/223 (46.64%), Postives = 160/223 (71.75%), Query Frame = 0 Query: 19 SLLSDQFYRRLMPFQRDGIAFGIKAQGRVLLADEMGLGKTLQAIGIMLHFHTDFPALVVLPSSVKFSWANELERWT-KLNPKRIKMVRSRADVEALRDADVVLVTYGMLSA-TAPVVEALQRARPHVVVLDESHSIKNQNSLRNQLLSPILKQAKRVILLSGTPALARPVELYPQLSAIAPSLFGTYLEYARRFCNAHQGRFG----WDVSGASNVAELHVKL 235 S+L D+ +RLMPFQ++G+ F + GR ++ADEMGLGKT+QAI + + ++P L+V+PSS+K+ W ELERW +LNP I +V +++D + + V ++ YG+L+ P+VEAL R R +VVV+DESH +K++N+ R+++L P+++ AKR ILL+GTPAL RP EL+ Q+ A+ P +FGT+ +YA+++CNAH FG WD GAS++ +LH +L Sbjct: 25 SVLPDKLQQRLMPFQKEGVKFALSKNGRCMIADEMGLGKTVQAISVAYAYRQEWPLLIVVPSSLKYPWIEELERWIPELNPGDINLVETKSDTLGISSSKVTVLGYGLLTTEVCPLVEALTRQRFNVVVVDESHYLKSRNAARSKILVPLIQNAKRAILLTGTPALGRPEELFMQIEALYPKMFGTWSDYAKQYCNAHYRFFGNRRQWDCYGASHLEDLHQRL 247 The following BLAST results are available for this feature:
BLAST of EWM25540.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|