rna5142, rna5142 (mRNA) Nannochloropsis gaditana

Overview
Namerna5142
Unique Namerna5142
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1840
Alignment locationCM002465.1:241243..242610 -

Link to JBrowse

Properties
Property NameValue
Productzinc finger ran-binding domain-containing protein 3
Orig transcript idgnl|cribi|Naga_100232g10.7108.mrna
Orig protein idgnl|cribi|Naga_100232g10.7108
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:241243..242610 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100232g10gene4963Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5142rna5142-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25540.1cds5130Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5142 ID=rna5142|Name=rna5142|organism=Nannochloropsis gaditana|type=mRNA|length=1840bp
ATGTCGCGAGGGCGGGGCACTCGACAGCCGACGCAGCGCCCCCCCCCGCA
GGAAGAGGGAGGATGGAATGGGGGCAGGAGGGCCGGTGTGTCGGGGAGCC
GGGAGGGGAAGAAAGGGGAAGGGCGAAAGAGGGAGGCGCCCACCGGCTTC
GGCGAAAGGGCACCTAGAGCCAGCGTCCGGTTCCCCAGGTCGAGGGGGGG
ATTCAGGGAAGATGGAAGCGAAGAGAGCGCGTGGGAGCGATTGAAAGCCA
GGGTAGGGATTACAGACGATAGACGGGGAGGAGAAGAAGGGGGGGCGGAG
GGAGGGAGGAGGGGCATAGGTATGTCTTTCGCGGTGTCTGCAAACACAGA
GCGGGTCCGGGTGGCCTATGGACCAGCTGGAGGGGAAGACGGAAGGCGGG
GGGCTGGAGCCGTGAATTTCAGCATGGAGGAATTTTATGCGTTGGTGGAT
GGACAGAGACTTGAACTCGTGAACACGCCATTTGAGGGGCTAGGGCCCTT
CCTTGAGCTCGACGGGAGCGAGCCCGCGGCGGCCACCTCCCCTTTCTCCC
TGTGCCTGCAGGTGCTGCTGGGGTGCGAAGCCTTCGTGCAGCAGTGGGCG
GACTTGAGGGGGTGGGAAAGGAAGCTGCTCGCAGAGGCGGAGCACTTGCA
CCTGCCTTTGGCGCAATCACTTCGGAAAGAGATTGGGAAGATATGGTGGA
AGGGGGAAGGAGCCGTGGAGGGCGGGACGGAGGGTCAAGGAGGGGAGAGG
GGGGAGGAGAGGAGGAAGCCATGTTTCGAGCGGTACGTCAAGTATCCAGC
GCTGGAAAATGGCCCCTCAGGGACCAAGGTTATTCCACCTTATGTGCCGC
ATGCCTTCGCACCACGAGCCAACGTCCCCACCCATGCAGGCTGGCCTCCT
GCACCCACTGAAAAATGCCCAGTCCCCACCAATGCCGAGGCCAGCACCTG
TACCAGTGCCAGCAGTGGGATGGAGAAGGATAGTGTGAGGACAGCGGGGA
AGGGCATGGGGGGAATCCACATATCCCCGCATGGTGCGATTTCACCCCCA
GGCTCGACCCCTGCGTCTTCGATCCCTTTGCTGTGCAGCTTCTGCAAACG
CCCCATCTCGGATCCCTCCCTCCTTCGTGACCACACCCTCCGCCTTTCCA
TGGCACATCACAGCCAGAGCTTCGCCTCCGTCACCACCGCTGGGGGCCGC
GACCGAGTGGATCGGATCGGTAGCGGCCCTCGGCAGCCCTACTGCTCCTA
TGCGTGCGGACAGGAAATTCTTCTGCGAGCCGGCTCCTCTTCGCTCATAC
GACGGCAACTTTTTGCTTTGGAACGAGGGGTCTGTCAACTCTGTGGCTGC
GACTGCCACGCGTTGTTCCAGCAAGTAAAAAGCTTGCCCCCCCCCGAGCG
TGTGCAGCTTTTCATGCGTCTCGAACACGCTTTCACATGTCTGGACAAGG
CGGCCATTACGGATCCTCGCGAGGGGCACTTTTGGCAGGTCGATCACGTC
TTACCCGTCGTGGAAGGGGGAGGAGCCTGCGGGTTGGAGAATCTACGTAC
CTTGTGCACCCCCTGCCATGCCCGAGAAACCACGCGTTTACGGATGCGAT
TGAGAGAGGGGAGGAACCAGGAGGCGGCCAAAGGCACCCGAGACATCCGG
TCTTTTGCGCGGAACGCGGAAGGAAAGAAAGCGTGTGGGAGACTTTGAGC
GTTGTTGCTGAAAGTGTGCGCAAAAAGGTAGCAGGGAACATTAGAAGCGA
AGAACGAGAAAGAAAGTAGGAAGGCTGGGCTTGTATGATAACTTGTGGCA
ACCAGGCCCTGTAAAAGTACCCTGTGACTCAACCCCCCGC
back to top

protein sequence of rna5142

>rna5142-protein ID=rna5142-protein|Name=rna5142|organism=Nannochloropsis gaditana|type=polypeptide|length=300bp
MSVPPASGGEPNSDAFRSSLLSDQFYRRLMPFQRDGIAFGIKAQGRVLLA
DEMGLGKTLQAIGIMLHFHTDFPALVVLPSSVKFSWANELERWTKLNPKR
IKMVRSRADVEALRDADVVLVTYGMLSATAPVVEALQRARPHVVVLDESH
SIKNQNSLRNQLLSPILKQAKRVILLSGTPALARPVELYPQLSAIAPSLF
GTYLEYARRFCNAHQGRFGWDVSGASNVAELHVKLQVSDVSLLGRPRPGR
FSSSRFLRVGLAFWEPPRRALDTVKGVVQQAGRRSDRSNECPLLCLCSVY
back to top

mRNA from alignment at CM002465.1:241243..242610-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5142 ID=rna5142|Name=rna5142|organism=Nannochloropsis gaditana|type=mRNA|length=1368bp|location=Sequence derived from alignment at CM002465.1:241243..242610- (Nannochloropsis gaditana)
CAAGATCGATGTATGAGCACAATTCACAATCCTGGCTGTTTTAATAAATA
TTGTCGTGTCAGTGGTCTCTAGTCGATGCATGTACCCAGTTTTTCGTCAG
TCAACCTCCCCTGCTTGCTTCCCTCTGAACCAGTTTACTTTCTGAGCAAG
GGACATGCCGCCTCGTGCTAGCCCATAAATGTCACAGCAAAGACGCTCTG
TGGCTCCCATTTTTCAAGAATCACGACTTCGGTAGGCCTTCAATATGTCC
GTACCACCTGCGTCGGGCGGAGAGCCCAACTCGGACGCGTTTCGCTCCAG
CTTGTTGAGTGATCAATTCTACCGACGGCTTATGCCCTTCCAACGAGATG
GCATTGCTTTTGGAATCAAAGCTCAAGGCCGCGTGCTGCTGGCTGATGAA
ATGGGCCTGGGAAAAACGCTTCAAGCGATCGGGATCATGCTTCATTTCCA
CACGGACTTTCCGGCTCTAGTGGTCTTGCCTTCCTCTGTTAAATTCAGCT
GGGCGAACGAATTGGAGCGATGGACAAAACTCAACCCCAAGAGGATCAAA
ATGGTGCGGTCTCGTGCGGACGTGGAGGCCTTACGCGACGCGGACGTGGT
GCTTGTGACCTACGGCATGCTCTCTGCGACCGCGCCTGTGGTGGAAGCGT
TACAGAGGGCCCGGCCCCATGTCGTGGTATTGGACGAGTCGCACTCCATC
AAGAACCAGAACTCGCTGCGAAACCAGCTGCTGTCGCCGATCTTAAAACA
GGTGATTCTTCTGCTTTAATAATACTTCACTTGGTCTTGAGGCGATAATA
TCGGCGCGCTGGGGAAGGCAATGGAGGGATAGCATGCGCTTCGGTTCCTT
CTCACCTTTTCTTCTTTCAATCCACTCCCCTTCCCTCCCTCTGCTCTTCA
GGCCAAGCGCGTCATCCTCCTTTCAGGCACGCCCGCCTTAGCGCGACCTG
TGGAGCTTTACCCTCAGCTCTCTGCCATCGCCCCTTCTCTCTTCGGGACC
TACCTAGAGTACGCCCGCCGGTTCTGCAACGCCCACCAGGGACGCTTTGG
GTGGGACGTCAGCGGTGCCTCCAACGTGGCAGAATTGCACGTCAAGCTTC
AGGTGAGTGACGTGTCATTACTTGGTCGGCCACGGCCGGGGCGCTTTTCC
TCTTCCAGGTTCCTCCGTGTCGGCTTGGCTTTCTGGGAACCCCCTCGGCG
AGCCCTCGACACGGTGAAAGGGGTCGTTCAACAAGCCGGGCGGCGCAGCG
ATCGGAGTAACGAGTGTCCTCTCCTTTGTCTGTGCAGCGTCTATTGATCT
TCAGGGTCTCGTGGAGGTGTCAGGGTTGGGTTTGGACCTCTTCGTTCGTT
CCACTCCTTCCTTCCCCC
back to top

Coding sequence (CDS) from alignment at CM002465.1:241243..242610-

>rna5142 ID=rna5142|Name=rna5142|organism=Nannochloropsis gaditana|type=CDS|length=1806bp|location=Sequence derived from alignment at CM002465.1:241243..242610- (Nannochloropsis gaditana)
GCCAAGCGCGTCATCCTCCTTTCAGGCACGCCCGCCTTAGCGCGACCTGT
GGAGCTTTACCCTCAGCTCTCTGCCATCGCCCCTTCTCTCTTCGGGACCT
ACCTAGAGTACGCCCGCCGGTTCTGCAACGCCCACCAGGGACGCTTTGGG
TGGGACGTCAGCGGTGCCTCCAACGTGGCAGAATTGCACGTCAAGCTTCA
GGTGAGTGACGTGTCATTACTTGGTCGGCCACGGCCGGGGCGCTTTTCCT
CTTCCAGGTTCCTCCGTGTCGGCTTGGCTTTCTGGGAACCCCCTCGGCGA
GCCCTCGACACGGTGAAAGGGGTCGTTCAACAAGCCGGGCGGCGCAGCGA
TCGGAGTAACGAGTGTCCTCTCCTTTGTCTGTGCAGCGTCTATTGAATGT
CCGTACCACCTGCGTCGGGCGGAGAGCCCAACTCGGACGCGTTTCGCTCC
AGCTTGTTGAGTGATCAATTCTACCGACGGCTTATGCCCTTCCAACGAGA
TGGCATTGCTTTTGGAATCAAAGCTCAAGGCCGCGTGCTGCTGGCTGATG
AAATGGGCCTGGGAAAAACGCTTCAAGCGATCGGGATCATGCTTCATTTC
CACACGGACTTTCCGGCTCTAGTGGTCTTGCCTTCCTCTGTTAAATTCAG
CTGGGCGAACGAATTGGAGCGATGGACAAAACTCAACCCCAAGAGGATCA
AAATGGTGCGGTCTCGTGCGGACGTGGAGGCCTTACGCGACGCGGACGTG
GTGCTTGTGACCTACGGCATGCTCTCTGCGACCGCGCCTGTGGTGGAAGC
GTTACAGAGGGCCCGGCCCCATGTCGTGGTATTGGACGAGTCGCACTCCA
TCAAGAACCAGAACTCGCTGCGAAACCAGCTGCTGTCGCCGATCTTAAAA
CAGGCCAAGCGCGTCATCCTCCTTTCAGGCACGCCCGCCTTAGCGCGACC
TGTGGAGCTTTACCCTCAGCTCTCTGCCATCGCCCCTTCTCTCTTCGGGA
CCTACCTAGAGTACGCCCGCCGGTTCTGCAACGCCCACCAGGGACGCTTT
GGGTGGGACGTCAGCGGTGCCTCCAACGTGGCAGAATTGCACGTCAAGCT
TCAGGTGAGTGACGTGTCATTACTTGGTCGGCCACGGCCGGGGCGCTTTT
CCTCTTCCAGGTTCCTCCGTGTCGGCTTGGCTTTCTGGGAACCCCCTCGG
CGAGCCCTCGACACGGTGAAAGGGGTCGTTCAACAAGCCGGGCGGCGCAG
CGATCGGAGTAACGAGTGTCCTCTCCTTTGTCTGTGCAGCGTCTATTGAA
TGTCCGTACCACCTGCGTCGGGCGGAGAGCCCAACTCGGACGCGTTTCGC
TCCAGCTTGTTGAGTGATCAATTCTACCGACGGCTTATGCCCTTCCAACG
AGATGGCATTGCTTTTGGAATCAAAGCTCAAGGCCGCGTGCTGCTGGCTG
ATGAAATGGGCCTGGGAAAAACGCTTCAAGCGATCGGGATCATGCTTCAT
TTCCACACGGACTTTCCGGCTCTAGTGGTCTTGCCTTCCTCTGTTAAATT
CAGCTGGGCGAACGAATTGGAGCGATGGACAAAACTCAACCCCAAGAGGA
TCAAAATGGTGCGGTCTCGTGCGGACGTGGAGGCCTTACGCGACGCGGAC
GTGGTGCTTGTGACCTACGGCATGCTCTCTGCGACCGCGCCTGTGGTGGA
AGCGTTACAGAGGGCCCGGCCCCATGTCGTGGTATTGGACGAGTCGCACT
CCATCAAGAACCAGAACTCGCTGCGAAACCAGCTGCTGTCGCCGATCTTA
AAACAG
back to top
Synonyms
Publications