EWM25540.1, cds5130 (CDS) Nannochloropsis gaditana

Overview
NameEWM25540.1
Unique Namecds5130
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002465.1:241860..242366 -
Alignment locationCM002465.1:241314..241709 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM25540.1
Productzinc finger ran-binding domain-containing protein 3
Orig transcript idgnl|cribi|Naga_100232g10.7108.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:241860..242366 -
CM002465.1supercontigCM002465.1:241314..241709 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0000166nucleotide binding
GO:0005524ATP binding
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
IPR000330SNF2_N
IPR014001Helicase_ATP-bd
Homology
BLAST of EWM25540.1 vs. NCBI_GenBank
Match: gi|585107310|gb|EWM25540.1| (zinc finger ran-binding domain-containing protein 3 [Nannochloropsis gaditana])

HSP 1 Score: 611.683 bits (1576), Expect = 0.000e+0
Identity = 300/300 (100.00%), Postives = 300/300 (100.00%), Query Frame = 0
Query:    1 MSVPPASGGEPNSDAFRSSLLSDQFYRRLMPFQRDGIAFGIKAQGRVLLADEMGLGKTLQAIGIMLHFHTDFPALVVLPSSVKFSWANELERWTKLNPKRIKMVRSRADVEALRDADVVLVTYGMLSATAPVVEALQRARPHVVVLDESHSIKNQNSLRNQLLSPILKQAKRVILLSGTPALARPVELYPQLSAIAPSLFGTYLEYARRFCNAHQGRFGWDVSGASNVAELHVKLQVSDVSLLGRPRPGRFSSSRFLRVGLAFWEPPRRALDTVKGVVQQAGRRSDRSNECPLLCLCSVY 300
            MSVPPASGGEPNSDAFRSSLLSDQFYRRLMPFQRDGIAFGIKAQGRVLLADEMGLGKTLQAIGIMLHFHTDFPALVVLPSSVKFSWANELERWTKLNPKRIKMVRSRADVEALRDADVVLVTYGMLSATAPVVEALQRARPHVVVLDESHSIKNQNSLRNQLLSPILKQAKRVILLSGTPALARPVELYPQLSAIAPSLFGTYLEYARRFCNAHQGRFGWDVSGASNVAELHVKLQVSDVSLLGRPRPGRFSSSRFLRVGLAFWEPPRRALDTVKGVVQQAGRRSDRSNECPLLCLCSVY
Sbjct:    1 MSVPPASGGEPNSDAFRSSLLSDQFYRRLMPFQRDGIAFGIKAQGRVLLADEMGLGKTLQAIGIMLHFHTDFPALVVLPSSVKFSWANELERWTKLNPKRIKMVRSRADVEALRDADVVLVTYGMLSATAPVVEALQRARPHVVVLDESHSIKNQNSLRNQLLSPILKQAKRVILLSGTPALARPVELYPQLSAIAPSLFGTYLEYARRFCNAHQGRFGWDVSGASNVAELHVKLQVSDVSLLGRPRPGRFSSSRFLRVGLAFWEPPRRALDTVKGVVQQAGRRSDRSNECPLLCLCSVY 300          
BLAST of EWM25540.1 vs. NCBI_GenBank
Match: gi|553179956|ref|XP_005852794.1| (zinc finger ran-binding domain-containing protein 3, partial [Nannochloropsis gaditana CCMP526] >gi|422295740|gb|EKU23039.1| zinc finger ran-binding domain-containing protein 3, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 484.567 bits (1246), Expect = 2.474e-166
Identity = 237/241 (98.34%), Postives = 238/241 (98.76%), Query Frame = 0
Query:    1 MSVPPASGGEPNSDAFRSSLLSDQFYRRLMPFQRDGIAFGIKAQGRVLLADEMGLGKTLQAIGIMLHFHTDFPALVVLPSSVKFSWANELERWTKLNPKRIKMVRSRADVEALRDADVVLVTYGMLSATAPVVEALQRARPHVVVLDESHSIKNQNSLRNQLLSPILKQAKRVILLSGTPALARPVELYPQLSAIAPSLFGTYLEYARRFCNAHQGRFGWDVSGASNVAELHVKLQVSDVS 241
            MSVPPASGGEPNSDAFRSSLLSDQFYRRLMPFQRDGIAFGIKAQGRVLLADEMGLGKTLQAIGIMLHFHTDFPALVVLPSSVKFSWANELERWTKLNPKRIKMVRSRADVEALRDADVVLVTYGMLSATAPVVEALQRARPHVVVLDESHSIKNQNSLRNQLLSPILKQAKRVILLSGTPALARPVELYPQLSAIAPSLFGTYLEYARRFCNAHQGRFGWDVSGASNVAELHVKLQ+   S
Sbjct:    1 MSVPPASGGEPNSDAFRSSLLSDQFYRRLMPFQRDGIAFGIKAQGRVLLADEMGLGKTLQAIGIMLHFHTDFPALVVLPSSVKFSWANELERWTKLNPKRIKMVRSRADVEALRDADVVLVTYGMLSATAPVVEALQRARPHVVVLDESHSIKNQNSLRNQLLSPILKQAKRVILLSGTPALARPVELYPQLSAIAPSLFGTYLEYARRFCNAHQGRFGWDVSGASNVAELHVKLQIVKAS 241          
BLAST of EWM25540.1 vs. NCBI_GenBank
Match: gi|676380483|ref|XP_009033520.1| (hypothetical protein AURANDRAFT_1193, partial [Aureococcus anophagefferens] >gi|323455831|gb|EGB11699.1| hypothetical protein AURANDRAFT_1193, partial [Aureococcus anophagefferens])

HSP 1 Score: 224.557 bits (571), Expect = 1.048e-66
Identity = 105/211 (49.76%), Postives = 156/211 (73.93%), Query Frame = 0
Query:   28 RLMPFQRDGIAFGIKAQGRVLLADEMGLGKTLQAIGIMLHFHTDFPALVVLPSSVKFSWANELERWT-KLNPKRIKMVRSRADVEAL--RDADVVLVTYGMLSATAPVVEALQRARPHVVVLDESHSIKNQNSLRNQLLSPILKQAKRVILLSGTPALARPVELYPQLSAIAPSLFGTYLEYARRFCNAHQGRFGWDVSGASNVAELHVKL 235
            +L+ FQR+G+AFG++A+GRVL+ADEMG GK+ QAI + LH+  ++PAL+V P+S++++WA+ELE+W   L P  I + + R+D EA+  +     +VT  + + ++ V +A++  +  VVV+DESH ++ ++S R +LL PI+K A R++LLSGTPALARPVEL+ Q+ AI    FGTY ++ +R+C   +GRFGWDVSGASNV ELH KL
Sbjct:    4 KLLKFQREGVAFGLRAKGRVLIADEMGCGKSAQAIRLCLHYFAEWPALIVCPASLRYTWAHELEKWLPTLAPSEISVAKGRSDKEAVCRKGIKFCIVTQSLFTESSGVAKAVEDRKFQVVVVDESHGLRTRDSQRTKLLLPIMKAAPRLVLLSGTPALARPVELFSQVHAIDGDAFGTYNKFTKRYCAPFKGRFGWDVSGASNVEELHGKL 214          
BLAST of EWM25540.1 vs. NCBI_GenBank
Match: gi|1126219542|ref|XP_019643922.1| (PREDICTED: DNA annealing helicase and endonuclease ZRANB3-like [Branchiostoma belcheri])

HSP 1 Score: 231.106 bits (588), Expect = 4.838e-65
Identity = 107/215 (49.77%), Postives = 152/215 (70.70%), Query Frame = 0
Query:   28 RLMPFQRDGIAFGIKAQGRVLLADEMGLGKTLQAIGIMLHFHTDFPALVVLPSSVKFSWANELERWT-KLNPKRIKMVRSRADVEALRDADVVLVTYGMLS-ATAPVVEALQRARPHVVVLDESHSIKNQNSLRNQLLSPILKQAKRVILLSGTPALARPVELYPQLSAIAPSLFGTYLEYARRFCNAHQ---GRF-GWDVSGASNVAELHVKLQ 236
            +LMPFQR+G+ F +K  GR L+ DEMGLGKTLQAI +  H+  ++P LVV+PSS+++ W  ELERW   L P  I +V SR D+  +  A V ++ YG++     P+V+AL      V+++DESH +KN+ ++R Q L P++K AKR +LL+GTPALARP EL+PQ+ A+ P  FG++ ++++R+CNAHQ   GRF  WD +GASN+AELH  LQ
Sbjct:   31 KLMPFQREGVKFALKKNGRCLIGDEMGLGKTLQAIAVAYHYRQEWPVLVVVPSSLRYQWVEELERWVPDLEPTHIHVVSSRDDIRNISTAQVTILGYGLIQRQDQPLVKALHDQNFQVIIVDESHYLKNRKAVRTQGLVPLVKNAKRALLLTGTPALARPAELFPQVDALLPGKFGSWTKFSKRYCNAHQVFYGRFPRWDTNGASNLAELHSNLQ 245          
BLAST of EWM25540.1 vs. NCBI_GenBank
Match: gi|961722398|ref|XP_014921461.1| (PREDICTED: DNA annealing helicase and endonuclease ZRANB3, partial [Acinonyx jubatus])

HSP 1 Score: 221.09 bits (562), Expect = 9.464e-65
Identity = 103/237 (43.46%), Postives = 161/237 (67.93%), Query Frame = 0
Query:    2 SVPPASGGEPNSDAFRSSLLSDQFYRRLMPFQRDGIAFGIKAQGRVLLADEMGLGKTLQAIGIMLHFHTDFPALVVLPSSVKFSWANELERWT-KLNPKRIKMVRSRADVEALRDADVVLVTYGMLSATAP-VVEALQRARPHVVVLDESHSIKNQNSLRNQLLSPILKQAKRVILLSGTPALARPVELYPQLSAIAPSLFGTYLEYARRFCNAHQGRFG----WDVSGASNVAELH 232
            S+PP +    N    +   L D+   +L+PFQ+DGIAF ++  GR ++ADEMGLGKT+QAI I   +  ++P L+V+PSS+++ W  E+E+W  +L+P+ I +++++ D+  +  + V ++ YG+L+  A  ++ AL      VV++DESH +K++N+ R+++L PI++ AKR ILL+GTPAL RP EL+ Q+ A+ P  FGT+ EYA+R+CNAH   FG    WD  GASN+ ELH
Sbjct:   11 SLPPQNSCLTNESCKQLDFLPDKLRAKLLPFQKDGIAFALRRDGRCMVADEMGLGKTIQAIAIAYFYKEEWPLLIVVPSSLRYPWTEEMEKWIPELSPEDINVIQNKTDIGRISTSKVTILGYGLLTTDAETLICALNNQNFKVVIVDESHYMKSRNATRSKILLPIVQTAKRAILLTGTPALGRPEELFMQIEALFPQKFGTWTEYAKRYCNAHMRFFGKRPQWDYRGASNLNELH 247          
BLAST of EWM25540.1 vs. NCBI_GenBank
Match: gi|657580259|ref|XP_008294085.1| (PREDICTED: DNA annealing helicase and endonuclease ZRANB3 [Stegastes partitus])

HSP 1 Score: 229.565 bits (584), Expect = 1.368e-64
Identity = 110/223 (49.33%), Postives = 156/223 (69.96%), Query Frame = 0
Query:   19 SLLSDQFYRRLMPFQRDGIAFGIKAQGRVLLADEMGLGKTLQAIGIMLHFHTDFPALVVLPSSVKFSWANELERWT-KLNPKRIKMVRSRADVEALRDADVVLVTYGMLSATA-PVVEALQRARPHVVVLDESHSIKNQNSLRNQLLSPILKQAKRVILLSGTPALARPVELYPQLSAIAPSLFGTYLEYARRFCNAHQGRFG----WDVSGASNVAELHVKL 235
            S L  +  +RLMPFQR+G+ F +   GR ++ADEMGLGKT+QAI +   F  ++P LVV+PSS+K+ W  ELERW  +L P  I +V S++D   +R + V ++ YG+L+  A P+VEAL R R  VVV+DESH +K++N+ R ++L P++K AKR +LL+GTPAL RP EL+ Q+ A+ P  FGT+ +YA+++CNAH   FG    WD  GASN+ ELH +L
Sbjct:   35 SGLPHKLLQRLMPFQREGVEFALSKNGRCMIADEMGLGKTVQAIAVAYAFRQEWPLLVVVPSSLKYPWIEELERWIPELQPGDINLVESKSDTMGIRGSKVTVLGYGLLTTDARPLVEALSRQRFAVVVVDESHYLKSRNAARTKILVPLIKSAKRAVLLTGTPALGRPEELFMQIDALYPKSFGTWTDYAKKYCNAHYRCFGPRRLWDCRGASNLQELHQRL 257          
BLAST of EWM25540.1 vs. NCBI_GenBank
Match: gi|1199361625|ref|XP_021176764.1| (DNA annealing helicase and endonuclease ZRANB3 [Fundulus heteroclitus])

HSP 1 Score: 227.639 bits (579), Expect = 5.856e-64
Identity = 114/241 (47.30%), Postives = 163/241 (67.63%), Query Frame = 0
Query:    4 PPASGGEPNSDAFRSSLLSD---QFYRRLMPFQRDGIAFGIKAQGRVLLADEMGLGKTLQAIGIMLHFHTDFPALVVLPSSVKFSWANELERWT-KLNPKRIKMVRSRADVEALRDADVVLVTYGMLSATA-PVVEALQRARPHVVVLDESHSIKNQNSLRNQLLSPILKQAKRVILLSGTPALARPVELYPQLSAIAPSLFGTYLEYARRFCNAHQGRFG----WDVSGASNVAELHVKL 235
            PP S    + D  RS  LS+   +  +RLMPFQR+G+ F +   GR ++ADEMGLGKT+QAI +   +  ++P LVV+PSS+K+ W  ELERW  +L P+ I +V S++    +  + V ++ YG+L+  A P+VEAL R R  VVVLDESH +K++N+ R ++L P+++ AKR ILL+GTPAL RP EL+ Q+ A+ P  FGT+ +YA+++CNAH   FG    WD  GASN+ ELH +L
Sbjct:    6 PPTS----DCDTRRSKQLSELPPKLLQRLMPFQREGVEFALSKGGRCMIADEMGLGKTVQAIAVACAYRQEWPLLVVVPSSLKYPWIEELERWIPELQPRDINLVESKSHTMGISSSKVTVLGYGLLTTDARPLVEALSRQRFAVVVLDESHYLKSRNAARTKILVPLIQSAKRAILLTGTPALGRPEELFMQIDALYPRRFGTWTDYAKKYCNAHYRYFGHRRQWDCRGASNLKELHQRL 242          
BLAST of EWM25540.1 vs. NCBI_GenBank
Match: gi|942193613|ref|XP_006006236.2| (PREDICTED: DNA annealing helicase and endonuclease ZRANB3-like, partial [Latimeria chalumnae])

HSP 1 Score: 210.69 bits (535), Expect = 1.566e-63
Identity = 96/222 (43.24%), Postives = 155/222 (69.82%), Query Frame = 0
Query:   20 LLSDQFYRRLMPFQRDGIAFGIKAQGRVLLADEMGLGKTLQAIGIMLHFHTDFPALVVLPSSVKFSWANELERWT-KLNPKRIKMVRSRADVEALRDADVVLVTYGMLSATA-PVVEALQRARPHVVVLDESHSIKNQNSLRNQLLSPILKQAKRVILLSGTPALARPVELYPQLSAIAPSLFGTYLEYARRFCNAHQGRFG----WDVSGASNVAELHVKL 235
            LL ++  +RL+PFQR+G+ F ++  GR ++ADEMGLGKT+QAI +   +  ++P L+++PSS+K+ W  E+E+W  +LNP    ++ ++ D+  +  + V ++ YG+L+  A  +V+AL +    VV++DESH +K++N+ R+++L PI++ A R ILL+GTPAL+RP EL+ Q+ A+ P  FGT+  YA+++CNAH   FG    WD  GASN+ ELH +L
Sbjct:   27 LLPEKLRQRLLPFQREGVRFALEKAGRCMIADEMGLGKTIQAIAVACFYREEWPLLIIVPSSLKYPWIEEMEKWVPELNPDDFNLIENKTDIGKIPTSKVTILGYGLLTTDARMLVDALCKQNFEVVIVDESHYMKSRNAARSKILVPIVQNASRAILLTGTPALSRPEELFMQIDALYPRRFGTWSSYAKQYCNAHVRYFGKRVQWDCKGASNLDELHKRL 248          
BLAST of EWM25540.1 vs. NCBI_GenBank
Match: gi|343960649|dbj|BAK61914.1| (zinc finger RAN-binding domain-containing protein 3 [Pan troglodytes])

HSP 1 Score: 218.009 bits (554), Expect = 1.587e-63
Identity = 100/220 (45.45%), Postives = 157/220 (71.36%), Query Frame = 0
Query:   19 SLLSDQFYRRLMPFQRDGIAFGIKAQGRVLLADEMGLGKTLQAIGIMLHFHTDFPALVVLPSSVKFSWANELERWT-KLNPKRIKMVRSRADVEALRDADVVLVTYGMLSATAP-VVEALQRARPHVVVLDESHSIKNQNSLRNQLLSPILKQAKRVILLSGTPALARPVELYPQLSAIAPSLFGTYLEYARRFCNAHQGRFG----WDVSGASNVAELH 232
              L D+   +L+PFQ+DGI F +K  GR ++ADEMGLGKT+QAIGI   +  ++P L+V+PSS+++ W  E+E+W  +L+P+ I +++++ADV  +  + V ++ YG+L+A A  +++AL      VV++DESH +K++N+ R+++L PI+++A+R ILL+GTPAL RP EL+ Q+ A+ P  FG + +YA+R+CNAH   FG    WD  GASN+ ELH
Sbjct:   27 DFLPDRLRAKLLPFQKDGIIFALKRNGRCMVADEMGLGKTIQAIGITYFYKEEWPLLIVVPSSLRYPWTEEIEKWIPELSPEEINVIQNKADVRRMSTSKVTVLGYGLLTADAKTLIDALNNQNFKVVIVDESHYMKSRNATRSRILLPIVQKARRAILLTGTPALGRPEELFMQIEALFPQKFGRWTDYAKRYCNAHIRYFGKRPQWDCRGASNLNELH 246          
BLAST of EWM25540.1 vs. NCBI_GenBank
Match: gi|929263261|ref|XP_014008120.1| (PREDICTED: DNA annealing helicase and endonuclease ZRANB3-like isoform X2 [Salmo salar])

HSP 1 Score: 225.713 bits (574), Expect = 2.239e-63
Identity = 104/223 (46.64%), Postives = 160/223 (71.75%), Query Frame = 0
Query:   19 SLLSDQFYRRLMPFQRDGIAFGIKAQGRVLLADEMGLGKTLQAIGIMLHFHTDFPALVVLPSSVKFSWANELERWT-KLNPKRIKMVRSRADVEALRDADVVLVTYGMLSA-TAPVVEALQRARPHVVVLDESHSIKNQNSLRNQLLSPILKQAKRVILLSGTPALARPVELYPQLSAIAPSLFGTYLEYARRFCNAHQGRFG----WDVSGASNVAELHVKL 235
            S+L D+  +RLMPFQ++G+ F +   GR ++ADEMGLGKT+QAI +   +  ++P L+V+PSS+K+ W  ELERW  +LNP  I +V +++D   +  + V ++ YG+L+    P+VEAL R R +VVV+DESH +K++N+ R+++L P+++ AKR ILL+GTPAL RP EL+ Q+ A+ P +FGT+ +YA+++CNAH   FG    WD  GAS++ +LH +L
Sbjct:   25 SVLPDKLQQRLMPFQKEGVKFALSKNGRCMIADEMGLGKTVQAISVAYAYRQEWPLLIVVPSSLKYPWIEELERWIPELNPGDINLVETKSDTLGISSSKVTVLGYGLLTTEVCPLVEALTRQRFNVVVVDESHYLKSRNAARSKILVPLIQNAKRAILLTGTPALGRPEELFMQIEALYPKMFGTWSDYAKQYCNAHYRFFGNRRQWDCYGASHLEDLHQRL 247          
The following BLAST results are available for this feature:
BLAST of EWM25540.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585107310|gb|EWM25540.1|0.000e+0100.00zinc finger ran-binding domain-containing protein ... [more]
gi|553179956|ref|XP_005852794.1|2.474e-16698.34zinc finger ran-binding domain-containing protein ... [more]
gi|676380483|ref|XP_009033520.1|1.048e-6649.76hypothetical protein AURANDRAFT_1193, partial [Aur... [more]
gi|1126219542|ref|XP_019643922.1|4.838e-6549.77PREDICTED: DNA annealing helicase and endonuclease... [more]
gi|961722398|ref|XP_014921461.1|9.464e-6543.46PREDICTED: DNA annealing helicase and endonuclease... [more]
gi|657580259|ref|XP_008294085.1|1.368e-6449.33PREDICTED: DNA annealing helicase and endonuclease... [more]
gi|1199361625|ref|XP_021176764.1|5.856e-6447.30DNA annealing helicase and endonuclease ZRANB3 [Fu... [more]
gi|942193613|ref|XP_006006236.2|1.566e-6343.24PREDICTED: DNA annealing helicase and endonuclease... [more]
gi|343960649|dbj|BAK61914.1|1.587e-6345.45zinc finger RAN-binding domain-containing protein ... [more]
gi|929263261|ref|XP_014008120.1|2.239e-6346.64PREDICTED: DNA annealing helicase and endonuclease... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5142rna5142Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications