rna5141, rna5141 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna5141
Unique Name	rna5141
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1921
Alignment location	CM002465.1:237321..239160 -

Link to JBrowse

Properties


Property Name	Value
Product	zinc finger ran-binding domain-containing protein 3
Orig transcript id	gnl\|cribi\|Naga_100130g1.10547.mrna
Orig protein id	gnl\|cribi\|Naga_100130g1.10547
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002465.1	supercontig	CM002465.1:237321..239160 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100130g1	gene4962	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25544.1	cds5129	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna5141	rna5141-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002465.1:237321..239160-
coding sequence from alignment at CM002465.1:237321..239160-

mRNA sequence

>rna5141 ID=rna5141|Name=rna5141|organism=Nannochloropsis gaditana|type=mRNA|length=1921bp
ACTTCTTCTGGATCTAACATGCAACTTACCACGGATCTGTACATATGCCC
AGACACAGATTAGAAACACGCGTAGATATAGACTAGGAACCCGCGTATCG
ACTGGCTTTTGAGGGTTCTCAACCCTCAAAGTATCGAAGCTGCTCTATGG
GCACATCCTCAACACTAAGATCTACCACCGGCCAGGAGCCACCCATGGGC
GGGCGCACTAAATTTGGATTCGCGCTGATCGTGCTGGACCTGACCATCTT
ACAAGGAGCTGCATTGGGATTGGGGTCATGTACTCACGCAACTGGATTTG
GGTACGCTGGCCCTGCGTCCTCGTTTTACCCCCAAGGATCTCAGGGGGAA
GCGTACTTGCCGTACACGACCCGCGCACTCCCCCGCCGCCCCCTGCGAAC
TTTCCCTACTTTTCCCGATACACCCTCGGGCCTGGCCGACGACATTGCTA
CCAGTGTGGCAAGGATGATAGAGGAGGACGCACGGCATCGTCAGCTAGAA
GCGGAAGCGGCGGCCTCGGTCTCAACCTCAATGTCCCTGCCACGGGCAAG
TCCCTCTCCCATATCACCGGGCCCCAGCCTCATCACATCAGCCCCCCGAC
TCCGCGTCGACCTTCAACTGGACGACATACATGACTTGTCCGAGGATTGG
TCCTGTGCGGTCAGTCATCGCTATTTGCCTTTATACGAGAAGGTGCTGCT
GAACTTACGAAATCATGGGTACCACCGTGTCGTGGCTGTGTTTGGGCGGA
GGGAAGAAGCCAGCTTTGTAGAAAAACGCTTGAGGCAAGGAGGTGCGTTG
GATGAGCTGCAGATAGAGTATTTGTCGAGGCCAAGACAAGAAAGCGAGGA
ATACGCTGAATTTGAGGGTAAGAAGCGCCGGGCCCCGTCCTTTCCCCTCG
GCGGCAGCGCCAAAAGCTTTCCCAAAACAAAGCGCATTGACATTGGGAAC
AAGCCTGAAATGGTCGTCTTTTTCGTCCCACAAAATGCGGCGGGGAGTTT
GGCGGAGGTGTCCGAGTTCCAGCGACTCACTGCCATTGCGACATTGCGGG
GGGCCCCTGTAGTGCTCGTGAATCCAGCCCTGACCGCCTACTCGCACCTC
CCGCAAGGCGGCATGGGGGAGCACGTCCGGCCCATGATCATGTCGGACTT
TGTCCCCTGTTTCCAGGCTGCGGCCTACCGTTACAAATACAACCCCTACC
TGTCGTACTCCATCGTCAGAAGAGGGGGAGAGGCGGGATGGGAACGGGGA
CCATGGGGAGTCTTTGCCCACGACGCCCGGCTGCCGGGGTCAGGGTGGGC
GTACTTGGAGTCCAGATTTGAAGAGCCGTATCGGTTGGAGGTGGAAAGTA
GGTACTTCGATTCCTGTTTTTACATTCAAAAGACGGCAGGGCCGCGGGGG
GGACGGTCCCGGGTGGGGGAAAACCCGTTTCAAGAAGTCAATGCCGTTCC
TTCTTCCAGGCACGACTATTAGAGGAAAGTCGAGGGAAGGAGAAGGAAGC
GTGTGTGACTGTGTGGGTAATGTGAATGCTGTGTAGTTTTGGGGCGGGCT
GGAGAGATGGAAGAGGAAAAAGAGAGACACTGCGTGACTCGCAGTGACAG
GTGTGACGTTTTCGAGCGGTGCGGGAAGGAGAGGCGCTGCATACCACGCA
GTGATAGATATTTTCAGGTGATCGTTGGGGAGGAGAGAGCCCGGTAAATC
AAGGCTCAAGGAGACATATTCCCCCAGGAATAAGAGCCAAAGAGAGTGAC
CGCTGTCTGGCGTTGCATAGAATAGCGAAGTAAACGAAAGCACTGCGTAT
GTAAGCCCAACATAACGGCTGTCAAACGATAAGGAGAGCCGGTTTGACAG
CGGGGGGTTGAGTCACAGGGTACTTTTACAGGGCCTGGTTGCCACAAGTT
ATCATACAAGCCCAGCCTTCC

protein sequence of rna5141

>rna5141-protein ID=rna5141-protein|Name=rna5141|organism=Nannochloropsis gaditana|type=polypeptide|length=565bp
MSRGRGTRQPTQRPPPQEEGGWNGGRRAGVSGSREGKKGEGRKREAPTGF
GERAPRASVRFPRSRGGFREDGSEESAWERLKARVGITDDRRGGEEGGAE
GGRRGIGMSFAVSANTERVRVAYGPAGGEDGRRGAGAVNFSMEEFYALVD
GQRLELVNTPFEGLGPFLELDGSEPAAATSPFSLCLQVLLGCEAFVQQWA
DLRGWERKLLAEAEHLHLPLAQSLRKEIGKIWWKGEGAVEGGTEGQGGER
GEERRKPCFERYVKYPALENGPSGTKVIPPYVPHAFAPRANVPTHAGWPP
APTEKCPVPTNAEASTCTSASSGMEKDSVRTAGKGMGGIHISPHGAISPP
GSTPASSIPLLCSFCKRPISDPSLLRDHTLRLSMAHHSQSFASVTTAGGR
DRVDRIGSGPRQPYCSYACGQEILLRAGSSSLIRRQLFALERGVCQLCGC
DCHALFQQVKSLPPPERVQLFMRLEHAFTCLDKAAITDPREGHFWQVDHV
LPVVEGGGACGLENLRTLCTPCHARETTRLRMRLREGRNQEAAKGTRDIR
SFARNAEGKKACGRL

mRNA from alignment at CM002465.1:237321..239160-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna5141 ID=rna5141|Name=rna5141|organism=Nannochloropsis gaditana|type=mRNA|length=1840bp|location=Sequence derived from alignment at CM002465.1:237321..239160- (Nannochloropsis gaditana)
ATGTCGCGAGGGCGGGGCACTCGACAGCCGACGCAGCGCCCCCCCCCGCA
GGAAGAGGGAGGATGGAATGGGGGCAGGAGGGCCGGTGTGTCGGGGAGCC
GGGAGGGGAAGAAAGGGGAAGGGCGAAAGAGGGAGGCGCCCACCGGCTTC
GGCGAAAGGGCACCTAGAGCCAGCGTCCGGTTCCCCAGGTCGAGGGGGGG
ATTCAGGGAAGATGGAAGCGAAGAGAGCGCGTGGGAGCGATTGAAAGCCA
GGGTAGGGATTACAGACGATAGACGGGGAGGAGAAGAAGGGGGGGCGGAG
GGAGGGAGGAGGGGCATAGGTATGTCTTTCGCGGTGTCTGCAAACACAGA
GCGGGTCCGGGTGGCCTATGGACCAGCTGGAGGGGAAGACGGAAGGCGGG
GGGCTGGAGCCGTGAATTTCAGCATGGAGGAATTTTATGCGTTGGTGGAT
GGACAGAGACTTGAACTCGTGAACACGCCATTTGAGGGGCTAGGGCCCTT
CCTTGAGCTCGACGGGAGCGAGCCCGCGGCGGCCACCTCCCCTTTCTCCC
TGTGCCTGCAGGTGCTGCTGGGGTGCGAAGCCTTCGTGCAGCAGTGGGCG
GACTTGAGGGGGTGGGAAAGGAAGCTGCTCGCAGAGGCGGAGCACTTGCA
CCTGCCTTTGGCGCAATCACTTCGGAAAGAGATTGGGAAGATATGGTGGA
AGGGGGAAGGAGCCGTGGAGGGCGGGACGGAGGGTCAAGGAGGGGAGAGG
GGGGAGGAGAGGAGGAAGCCATGTTTCGAGCGGTACGTCAAGTATCCAGC
GCTGGAAAATGGCCCCTCAGGGACCAAGGTTATTCCACCTTATGTGCCGC
ATGCCTTCGCACCACGAGCCAACGTCCCCACCCATGCAGGCTGGCCTCCT
GCACCCACTGAAAAATGCCCAGTCCCCACCAATGCCGAGGCCAGCACCTG
TACCAGTGCCAGCAGTGGGATGGAGAAGGATAGTGTGAGGACAGCGGGGA
AGGGCATGGGGGGAATCCACATATCCCCGCATGGTGCGATTTCACCCCCA
GGCTCGACCCCTGCGTCTTCGATCCCTTTGCTGTGCAGCTTCTGCAAACG
CCCCATCTCGGATCCCTCCCTCCTTCGTGACCACACCCTCCGCCTTTCCA
TGGCACATCACAGCCAGAGCTTCGCCTCCGTCACCACCGCTGGGGGCCGC
GACCGAGTGGATCGGATCGGTAGCGGCCCTCGGCAGCCCTACTGCTCCTA
TGCGTGCGGACAGGAAATTCTTCTGCGAGCCGGCTCCTCTTCGCTCATAC
GACGGCAACTTTTTGCTTTGGAACGAGGGGTCTGTCAACTCTGTGGCTGC
GACTGCCACGCGTTGTTCCAGCAAGTAAAAAGCTTGCCCCCCCCCGAGCG
TGTGCAGCTTTTCATGCGTCTCGAACACGCTTTCACATGTCTGGACAAGG
CGGCCATTACGGATCCTCGCGAGGGGCACTTTTGGCAGGTCGATCACGTC
TTACCCGTCGTGGAAGGGGGAGGAGCCTGCGGGTTGGAGAATCTACGTAC
CTTGTGCACCCCCTGCCATGCCCGAGAAACCACGCGTTTACGGATGCGAT
TGAGAGAGGGGAGGAACCAGGAGGCGGCCAAAGGCACCCGAGACATCCGG
TCTTTTGCGCGGAACGCGGAAGGAAAGAAAGCGTGTGGGAGACTTTGAGC
GTTGTTGCTGAAAGTGTGCGCAAAAAGGTAGCAGGGAACATTAGAAGCGA
AGAACGAGAAAGAAAGTAGGAAGGCTGGGCTTGTATGATAACTTGTGGCA
ACCAGGCCCTGTAAAAGTACCCTGTGACTCAACCCCCCGC

Coding sequence (CDS) from alignment at CM002465.1:237321..239160-

>rna5141 ID=rna5141|Name=rna5141|organism=Nannochloropsis gaditana|type=CDS|length=1698bp|location=Sequence derived from alignment at CM002465.1:237321..239160- (Nannochloropsis gaditana)
ATGTCGCGAGGGCGGGGCACTCGACAGCCGACGCAGCGCCCCCCCCCGCA
GGAAGAGGGAGGATGGAATGGGGGCAGGAGGGCCGGTGTGTCGGGGAGCC
GGGAGGGGAAGAAAGGGGAAGGGCGAAAGAGGGAGGCGCCCACCGGCTTC
GGCGAAAGGGCACCTAGAGCCAGCGTCCGGTTCCCCAGGTCGAGGGGGGG
ATTCAGGGAAGATGGAAGCGAAGAGAGCGCGTGGGAGCGATTGAAAGCCA
GGGTAGGGATTACAGACGATAGACGGGGAGGAGAAGAAGGGGGGGCGGAG
GGAGGGAGGAGGGGCATAGGTATGTCTTTCGCGGTGTCTGCAAACACAGA
GCGGGTCCGGGTGGCCTATGGACCAGCTGGAGGGGAAGACGGAAGGCGGG
GGGCTGGAGCCGTGAATTTCAGCATGGAGGAATTTTATGCGTTGGTGGAT
GGACAGAGACTTGAACTCGTGAACACGCCATTTGAGGGGCTAGGGCCCTT
CCTTGAGCTCGACGGGAGCGAGCCCGCGGCGGCCACCTCCCCTTTCTCCC
TGTGCCTGCAGGTGCTGCTGGGGTGCGAAGCCTTCGTGCAGCAGTGGGCG
GACTTGAGGGGGTGGGAAAGGAAGCTGCTCGCAGAGGCGGAGCACTTGCA
CCTGCCTTTGGCGCAATCACTTCGGAAAGAGATTGGGAAGATATGGTGGA
AGGGGGAAGGAGCCGTGGAGGGCGGGACGGAGGGTCAAGGAGGGGAGAGG
GGGGAGGAGAGGAGGAAGCCATGTTTCGAGCGGTACGTCAAGTATCCAGC
GCTGGAAAATGGCCCCTCAGGGACCAAGGTTATTCCACCTTATGTGCCGC
ATGCCTTCGCACCACGAGCCAACGTCCCCACCCATGCAGGCTGGCCTCCT
GCACCCACTGAAAAATGCCCAGTCCCCACCAATGCCGAGGCCAGCACCTG
TACCAGTGCCAGCAGTGGGATGGAGAAGGATAGTGTGAGGACAGCGGGGA
AGGGCATGGGGGGAATCCACATATCCCCGCATGGTGCGATTTCACCCCCA
GGCTCGACCCCTGCGTCTTCGATCCCTTTGCTGTGCAGCTTCTGCAAACG
CCCCATCTCGGATCCCTCCCTCCTTCGTGACCACACCCTCCGCCTTTCCA
TGGCACATCACAGCCAGAGCTTCGCCTCCGTCACCACCGCTGGGGGCCGC
GACCGAGTGGATCGGATCGGTAGCGGCCCTCGGCAGCCCTACTGCTCCTA
TGCGTGCGGACAGGAAATTCTTCTGCGAGCCGGCTCCTCTTCGCTCATAC
GACGGCAACTTTTTGCTTTGGAACGAGGGGTCTGTCAACTCTGTGGCTGC
GACTGCCACGCGTTGTTCCAGCAAGTAAAAAGCTTGCCCCCCCCCGAGCG
TGTGCAGCTTTTCATGCGTCTCGAACACGCTTTCACATGTCTGGACAAGG
CGGCCATTACGGATCCTCGCGAGGGGCACTTTTGGCAGGTCGATCACGTC
TTACCCGTCGTGGAAGGGGGAGGAGCCTGCGGGTTGGAGAATCTACGTAC
CTTGTGCACCCCCTGCCATGCCCGAGAAACCACGCGTTTACGGATGCGAT
TGAGAGAGGGGAGGAACCAGGAGGCGGCCAAAGGCACCCGAGACATCCGG
TCTTTTGCGCGGAACGCGGAAGGAAAGAAAGCGTGTGGGAGACTTTGA

Synonyms

Publications