EWM25544.1, cds5129 (CDS) Nannochloropsis gaditana

Overview
NameEWM25544.1
Unique Namecds5129
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002465.1:237463..239160 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM25544.1
Productzinc finger ran-binding domain-containing protein 3
Orig transcript idgnl|cribi|Naga_100130g1.10547.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:237463..239160 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0004518nuclease activity
GO:0004519endonuclease activity
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR002711HNH
Homology
BLAST of EWM25544.1 vs. NCBI_GenBank
Match: gi|585107315|gb|EWM25544.1| (zinc finger ran-binding domain-containing protein 3 [Nannochloropsis gaditana])

HSP 1 Score: 1141.33 bits (2951), Expect = 0.000e+0
Identity = 565/565 (100.00%), Postives = 565/565 (100.00%), Query Frame = 0
Query:    1 MSRGRGTRQPTQRPPPQEEGGWNGGRRAGVSGSREGKKGEGRKREAPTGFGERAPRASVRFPRSRGGFREDGSEESAWERLKARVGITDDRRGGEEGGAEGGRRGIGMSFAVSANTERVRVAYGPAGGEDGRRGAGAVNFSMEEFYALVDGQRLELVNTPFEGLGPFLELDGSEPAAATSPFSLCLQVLLGCEAFVQQWADLRGWERKLLAEAEHLHLPLAQSLRKEIGKIWWKGEGAVEGGTEGQGGERGEERRKPCFERYVKYPALENGPSGTKVIPPYVPHAFAPRANVPTHAGWPPAPTEKCPVPTNAEASTCTSASSGMEKDSVRTAGKGMGGIHISPHGAISPPGSTPASSIPLLCSFCKRPISDPSLLRDHTLRLSMAHHSQSFASVTTAGGRDRVDRIGSGPRQPYCSYACGQEILLRAGSSSLIRRQLFALERGVCQLCGCDCHALFQQVKSLPPPERVQLFMRLEHAFTCLDKAAITDPREGHFWQVDHVLPVVEGGGACGLENLRTLCTPCHARETTRLRMRLREGRNQEAAKGTRDIRSFARNAEGKKACGRL 565
            MSRGRGTRQPTQRPPPQEEGGWNGGRRAGVSGSREGKKGEGRKREAPTGFGERAPRASVRFPRSRGGFREDGSEESAWERLKARVGITDDRRGGEEGGAEGGRRGIGMSFAVSANTERVRVAYGPAGGEDGRRGAGAVNFSMEEFYALVDGQRLELVNTPFEGLGPFLELDGSEPAAATSPFSLCLQVLLGCEAFVQQWADLRGWERKLLAEAEHLHLPLAQSLRKEIGKIWWKGEGAVEGGTEGQGGERGEERRKPCFERYVKYPALENGPSGTKVIPPYVPHAFAPRANVPTHAGWPPAPTEKCPVPTNAEASTCTSASSGMEKDSVRTAGKGMGGIHISPHGAISPPGSTPASSIPLLCSFCKRPISDPSLLRDHTLRLSMAHHSQSFASVTTAGGRDRVDRIGSGPRQPYCSYACGQEILLRAGSSSLIRRQLFALERGVCQLCGCDCHALFQQVKSLPPPERVQLFMRLEHAFTCLDKAAITDPREGHFWQVDHVLPVVEGGGACGLENLRTLCTPCHARETTRLRMRLREGRNQEAAKGTRDIRSFARNAEGKKACGRL
Sbjct:    1 MSRGRGTRQPTQRPPPQEEGGWNGGRRAGVSGSREGKKGEGRKREAPTGFGERAPRASVRFPRSRGGFREDGSEESAWERLKARVGITDDRRGGEEGGAEGGRRGIGMSFAVSANTERVRVAYGPAGGEDGRRGAGAVNFSMEEFYALVDGQRLELVNTPFEGLGPFLELDGSEPAAATSPFSLCLQVLLGCEAFVQQWADLRGWERKLLAEAEHLHLPLAQSLRKEIGKIWWKGEGAVEGGTEGQGGERGEERRKPCFERYVKYPALENGPSGTKVIPPYVPHAFAPRANVPTHAGWPPAPTEKCPVPTNAEASTCTSASSGMEKDSVRTAGKGMGGIHISPHGAISPPGSTPASSIPLLCSFCKRPISDPSLLRDHTLRLSMAHHSQSFASVTTAGGRDRVDRIGSGPRQPYCSYACGQEILLRAGSSSLIRRQLFALERGVCQLCGCDCHALFQQVKSLPPPERVQLFMRLEHAFTCLDKAAITDPREGHFWQVDHVLPVVEGGGACGLENLRTLCTPCHARETTRLRMRLREGRNQEAAKGTRDIRSFARNAEGKKACGRL 565          
BLAST of EWM25544.1 vs. NCBI_GenBank
Match: gi|397642908|gb|EJK75533.1| (hypothetical protein THAOC_02744 [Thalassiosira oceanica])

HSP 1 Score: 133.265 bits (334), Expect = 5.124e-29
Identity = 78/172 (45.35%), Postives = 99/172 (57.56%), Query Frame = 0
Query:  414 YCSYACGQEILLRAG---SSSLIRRQLFALERGVCQLCGCDCHALFQQVKSLPPPERVQLFM----------------------RLEHAFTCLDKAAITDPREGHFWQVDHVLPVVEGGGACGLENLRTLCTPCHARETTRLRMRLREGRNQEAAKGTRDIRSFARNAEGKK 560
            YCS+ C +E  ++ G   SSS IR Q+FALERGVCQLCG D +ALFQ++K+L PPER+   +                      R E +FTC    ++T  R    +Q DH + V EGGG  GL+NLRTLCTPCHA ET +L  RL+   NQ  + G  DI +   N EGKK
Sbjct:  803 YCSFECAEEGRVKRGGLYSSSKIREQVFALERGVCQLCGVDSYALFQRIKALEPPERLNALLKAKWKLPQGKRSVDRLLQMPEGRFEISFTC-KYFSLTLLRISRIFQADHEVAVAEGGGGTGLDNLRTLCTPCHAAETEKLLSRLKTS-NQ--SNGQMDIFAALSNLEGKK 970          
BLAST of EWM25544.1 vs. NCBI_GenBank
Match: gi|923126757|ref|XP_013756845.1| (zinc finger Ran-binding domain-containing protein 3 [Thecamonas trahens ATCC 50062] >gi|906557055|gb|KNC50298.1| zinc finger Ran-binding domain-containing protein 3 [Thecamonas trahens ATCC 50062])

HSP 1 Score: 129.028 bits (323), Expect = 1.221e-27
Identity = 65/143 (45.45%), Postives = 85/143 (59.44%), Query Frame = 0
Query:  410 PRQPYCSYACGQEILLRAGSSSLIRRQLFALERGVCQLCGCDCHALFQQVKSLPPPERVQLFMR--LEHAFTCLDKAAITDPREGHFWQVDHVLPVVEGGGACGLENLRTLCTPCHARETTRLRMRLREGRNQEAAKGTRDIR 550
            P   +CS  C +E+ +RA SS+ +R+QLF LE GVC  CG D H ++   K L P +R          +    + +  + +P  G FWQ DH++PVVEGGG C L N RTLCTPCHA ET+ LR RLR  +   A+ GT DIR
Sbjct:  864 PDAAFCSTKCQREMQVRA-SSTAVRQQLFELEHGVCVKCGVDAHKVYAATKVLHPHDRAAHIQASPFANCSLAMRQRMVNEPSPGLFWQADHIVPVVEGGGQCSLFNYRTLCTPCHAAETSVLRDRLRRAQMAVASAGTADIR 1005          
BLAST of EWM25544.1 vs. NCBI_GenBank
Match: gi|1191036499|ref|XP_020895461.1| (DNA annealing helicase and endonuclease ZRANB3-like [Exaiptasia pallida])

HSP 1 Score: 123.25 bits (308), Expect = 7.853e-26
Identity = 61/154 (39.61%), Postives = 86/154 (55.84%), Query Frame = 0
Query:  406 IGSGPRQPYCSYACGQEILLRAGSSSLIRRQLFALERGVCQLCGCDCHALFQQVKSLPPPERVQLFMRLEHAFTC-----LDKAAITDPREGHFWQVDHVLPVVEGGGACGLENLRTLCTPCHARETTRLRMRLREGRNQEAAKGTRDIRSFAR 554
            +G+     +CS+ C +   +R  S +  RRQLF  E+G+CQLC  D HA F  VK+L   +R      LE++             I DP+EG FW+ DH++ V EGGG CG+ENLRTLC PCH + T  L +RL+  +      G+R+I  F +
Sbjct:  637 LGNNWDSRFCSFDCKESYQMRI-SGTATRRQLFDAEQGICQLCHFDAHAFFTSVKALQKKDRRTF---LENSIYADLPPRFLNRMILDPKEGMFWEADHIVAVAEGGGECGIENLRTLCVPCHKKVTKDLLIRLKNKKRAVDTTGSRNITGFFK 786          
BLAST of EWM25544.1 vs. NCBI_GenBank
Match: gi|999988660|gb|KXJ27740.1| (DNA annealing helicase and endonuclease ZRANB3 [Exaiptasia pallida])

HSP 1 Score: 123.635 bits (309), Expect = 9.502e-26
Identity = 61/154 (39.61%), Postives = 86/154 (55.84%), Query Frame = 0
Query:  406 IGSGPRQPYCSYACGQEILLRAGSSSLIRRQLFALERGVCQLCGCDCHALFQQVKSLPPPERVQLFMRLEHAFTC-----LDKAAITDPREGHFWQVDHVLPVVEGGGACGLENLRTLCTPCHARETTRLRMRLREGRNQEAAKGTRDIRSFAR 554
            +G+     +CS+ C +   +R  S +  RRQLF  E+G+CQLC  D HA F  VK+L   +R      LE++             I DP+EG FW+ DH++ V EGGG CG+ENLRTLC PCH + T  L +RL+  +      G+R+I  F +
Sbjct: 1298 LGNNWDSRFCSFDCKESYQMRI-SGTATRRQLFDAEQGICQLCHFDAHAFFTSVKALQKKDRRTF---LENSIYADLPPRFLNRMILDPKEGMFWEADHIVAVAEGGGECGIENLRTLCVPCHKKVTKDLLIRLKNKKRAVDTTGSRNITGFFK 1447          
BLAST of EWM25544.1 vs. NCBI_GenBank
Match: gi|551612826|ref|XP_005787425.1| (hypothetical protein EMIHUDRAFT_228034 [Emiliania huxleyi CCMP1516] >gi|485640802|gb|EOD34996.1| hypothetical protein EMIHUDRAFT_228034 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 116.701 bits (291), Expect = 1.290e-25
Identity = 65/146 (44.52%), Postives = 86/146 (58.90%), Query Frame = 0
Query:  410 PRQPYCSYACGQEILLRAGSSSLIRRQLFALERGVCQLCGCDCHALFQQVKSLPP-PERVQLFMRLEHAFTCLDKAA--ITDPREGHFWQVDHVLPVVEGGGACGLENLRTLCTPCHARETTRLRMRLREGRNQEAAKGTRDIRSF 552
            P  P+CS  C       +   +  RRQ++  +RGVC  CG D H L++Q+ +L   PER+Q   R  H  T  D+    + DP+EG FW+ DH+LPV EGGG   L NL+TLC PCHA +T R     +E + Q AAKGT D+RSF
Sbjct:  133 PDSPFCSEGCAASYAAASSQGA-GRRQVYDRDRGVCAACGFDAHRLYRQIAALATGPERMQALQRT-HYPTKGDRIGRLLRDPKEGDFWEADHILPVEEGGGESDLSNLQTLCVPCHADKTRRQAQSSKERKRQAAAKGTADLRSF 276          
BLAST of EWM25544.1 vs. NCBI_GenBank
Match: gi|828209141|ref|XP_012557862.1| (PREDICTED: DNA annealing helicase and endonuclease ZRANB3-like [Hydra vulgaris])

HSP 1 Score: 122.094 bits (305), Expect = 2.666e-25
Identity = 62/146 (42.47%), Postives = 85/146 (58.22%), Query Frame = 0
Query:  402 RVDRIGSGP-RQPYCSYACGQEILLRAGSS-SLIRRQLFALERGVCQLCGCDCHALFQQVKSLPPPERVQLFMRLEHAFTCLDKAA-------ITDPREGHFWQVDHVLPVVEGGGACGLENLRTLCTPCHARETTRLRMRLREGR 538
            +V++I +G     +CS+ C QE  +R+ S     R QLFA+E GVCQ+CG D H +F ++ ++P   R     +     TC  K +       I  P+EG FWQ DHVL V EGGG CGLEN RTLCTPCH   T  L +R+++ +
Sbjct: 1326 QVEQIAAGSWLARFCSHTCMQEFKIRSKSKHENAREQLFAVELGVCQMCGTDAHTVFLEISNMPIANRKAALEK-----TCFVKLSVPVLNKMIKHPKEGLFWQADHVLAVAEGGGECGLENYRTLCTPCHKVVTKDLMIRIKKVK 1466          
BLAST of EWM25544.1 vs. NCBI_GenBank
Match: gi|1126219542|ref|XP_019643922.1| (PREDICTED: DNA annealing helicase and endonuclease ZRANB3-like [Branchiostoma belcheri])

HSP 1 Score: 119.013 bits (297), Expect = 2.523e-24
Identity = 71/199 (35.68%), Postives = 97/199 (48.74%), Query Frame = 0
Query:  361 LCSFCKRPISDPSLLRDHTLRLSMAHHSQSFASVTTAGGRDRVDRIGSGPRQPYCSYACGQEILLRAGSSSLIRRQLFALERGVCQLCGCDCHALFQQVKSLPPPERVQLFMR---LEHAFTCLDKAAITDPREGHFWQVDHVLPVVEGGGACGLENLRTLCTPCHARETTRLRMRLREGRNQE--AAKGTRDIRSFAR 554
            LC +C++P+S                  QS  +  T G    V      P + YCS  C +E  +R   S   R+QL   E GVCQ+CG +   +FQQVK LP  ER ++F++   L           I DP+EG FW  DH++PV +GGG C L+N RTLC  CH + TT+     R  + QE  +  G R I  F +
Sbjct: 1285 LCLWCQKPVS----------------QQQSSLAADTEGASSHV-----RPSR-YCSTECKEEYRIRMKGSHHSRQQLRDTEFGVCQICGTNMRQIFQQVKDLPMSER-KVFLKTTPLSSLPAAQLNKIIADPKEGQFWHADHIVPVADGGGLCSLDNFRTLCVACHRKVTTQQNRERRSAQKQERRSQDGYRSIMDFIK 1460          
BLAST of EWM25544.1 vs. NCBI_GenBank
Match: gi|1211421982|ref|XP_021497101.1| (DNA annealing helicase and endonuclease ZRANB3 isoform X1 [Meriones unguiculatus] >gi|1211421984|ref|XP_021497102.1| DNA annealing helicase and endonuclease ZRANB3 isoform X1 [Meriones unguiculatus])

HSP 1 Score: 116.701 bits (291), Expect = 9.483e-24
Identity = 65/142 (45.77%), Postives = 81/142 (57.04%), Query Frame = 0
Query:  414 YCSYACGQEILLRAGSSSLIRRQLFALERGVCQLCGCDCHALFQQVKSLPPPERVQLFMRLEHAFTCLDKA--AITDPREGHFWQVDHVLPVVEGGGACGLENLRTLCTPCHARETTR-LRMRLREGRNQEAAKGTRDIRSF 552
            +CS  C  E  +R+ +S L R Q+FA E GVCQLCG D   LF QV+  P  +R  L      A   L++    + +P EGHFWQVDH+ PV EGGG C L+NL+TLCT CH   T R  + R R  +   AAK   DI  F
Sbjct:  589 FCSLKCQDEFWIRSNNSYL-RAQVFAAEHGVCQLCGVDAQELFLQVRDAPKSQRKSLLDAAWAAKLPLEQLNDMLRNPGEGHFWQVDHIKPVYEGGGQCSLDNLQTLCTVCHKERTARQAKERSRVRQRSLAAKHGSDITRF 729          
BLAST of EWM25544.1 vs. NCBI_GenBank
Match: gi|1176117810|ref|XP_020630085.1| (DNA annealing helicase and endonuclease ZRANB3-like, partial [Orbicella faveolata])

HSP 1 Score: 107.457 bits (267), Expect = 9.810e-24
Identity = 54/130 (41.54%), Postives = 74/130 (56.92%), Query Frame = 0
Query:  429 SSSLIRRQLFALERGVCQLCGCDCHALFQQVKSLPPPERVQLFMRLEHAFTCLD----KAAITDPREGHFWQVDHVLPVVEGGGACGLENLRTLCTPCHARETTRLRMRLREGRNQEAAKGTRDIRSFAR 554
            S + +RR LF  ERG+CQLC  D H+L+Q V  L    R     R    ++ L     K  + +P+EG FW+ DH+ PV EGGG CGL+N RTLC  CH + T  L  RL++ +  + + G  DI +F R
Sbjct:   26 SGTAVRRALFESERGICQLCFLDAHSLYQSVTVLSVRNRPAFLART--PYSALPQRTLKKMVMEPKEGMFWEADHITPVSEGGGECGLDNYRTLCVMCHRKATEELNRRLKQQKVLQYSAGYADISTFFR 153          
The following BLAST results are available for this feature:
BLAST of EWM25544.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585107315|gb|EWM25544.1|0.000e+0100.00zinc finger ran-binding domain-containing protein ... [more]
gi|397642908|gb|EJK75533.1|5.124e-2945.35hypothetical protein THAOC_02744 [Thalassiosira oc... [more]
gi|923126757|ref|XP_013756845.1|1.221e-2745.45zinc finger Ran-binding domain-containing protein ... [more]
gi|1191036499|ref|XP_020895461.1|7.853e-2639.61DNA annealing helicase and endonuclease ZRANB3-lik... [more]
gi|999988660|gb|KXJ27740.1|9.502e-2639.61DNA annealing helicase and endonuclease ZRANB3 [Ex... [more]
gi|551612826|ref|XP_005787425.1|1.290e-2544.52hypothetical protein EMIHUDRAFT_228034 [Emiliania ... [more]
gi|828209141|ref|XP_012557862.1|2.666e-2542.47PREDICTED: DNA annealing helicase and endonuclease... [more]
gi|1126219542|ref|XP_019643922.1|2.523e-2435.68PREDICTED: DNA annealing helicase and endonuclease... [more]
gi|1211421982|ref|XP_021497101.1|9.483e-2445.77DNA annealing helicase and endonuclease ZRANB3 iso... [more]
gi|1176117810|ref|XP_020630085.1|9.810e-2441.54DNA annealing helicase and endonuclease ZRANB3-lik... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5141rna5141Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications