|
Properties
Property Name | Value |
Product | Rubisco LS methyltransferase, substrate-binding domain protein |
Orig transcript id | gnl|cribi|Naga_100543g4.5681.mrna |
Orig protein id | gnl|cribi|Naga_100543g4.5681 |
Gbkey | mRNA |
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
CM002465.1 | supercontig | CM002465.1:56706..58445 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna5079 ID=rna5079|Name=rna5079|organism=Nannochloropsis gaditana|type=mRNA|length=1167bp ACATTGTGTCAACATGCTGGTTTCATTTCCACAGCTTTTGCAGTCATCGA TCTTGTCCACAACGATAATTTTCCAGGCAGGGCGGTGGCTCGGAGGGGAG GCATACTGCTTCACTTTTGGCTGTTTTGGCATTAAATTTGTCCTGCCATT TCTACATCATCCTTGATACGGCTGCTACATTAAGAAATTAAGTAGAGGTG TACAACGCCGTAGACGAAGCATGCAACTGGATGCGGGAGTGAGCAGCAGT GGAGGTACCGCAGACGAGTCCGCTGTCAACAAATACGACCGGTTCTTAAA ATGGCTTTTGGACAACGGCGCACACTTTCCTCTACTAGAATTGAGGGAGT ACGAATCCGACGTCCGCGGGGTGCACGCGAAGGAGGCGCTGGCAGGCGAT CAGGTGGTGGTGGAAATTCCCCTCCGGTGCCTGATCACGGTGGAGATGGG GAAGGAGTCCGACGTGGGAAAAGCGGTGCTCGCGTCCAATTTGCCCCTGG ACGCACCCAAGCACATCTTCTTGATGCTCTTCATGCTCACGGACAGGCGG AACCCGTCCTCCTTCTTTAAGCCCTACTACGATATCCTTCCCTCCTCCTT GTCGAACATGCCGATCTTCTGGACGGATGAGGAACTGGCTTACCTGAAAG GCTCCCACCTCCTGACCCAGATCGAGGAACGGAAGCGTGCCATTGAAGCC GACTACGCGGCCATCGCCGACGTGGCTCCCTCTCTCCCCTCCATCTGCTC AGTGGAGGAGTTCAAGTGGGCCCGTATGTGCGTCTGTTCGCGCAATTTTG GTCTGGAGGTGAACAGAATCAGGACGGCGGCCTTGGTCCCCTACGCAGAT ATGCTCAACCACCAGCGGCCCCGCGAAACCAAGTGGACCTTCGACAACGC TCGTCAGGCTTTTACTATCACGACGCTCCAGCCCATCGCCCCCGGGGCCC AGGTCTATGATTCATACGGCCAGAAGTGTAACCACCGCTTCCTTCTCAAC TACGGTTTCGCCGTGGAAAATAACAGAGAAGCAGATAATTTCTGTCCAAA CGAGGTCGGGTTGTGGCAGGAGAGAGCGAGGAAGGGGGAGAGGGAAAGAG GTACAATGGGATGATTCCCGCACGAAAATTGTAGCACTTAAAAGAATTGT TCTCCCTACCCTCCTCC back to topprotein sequence of rna5079 >rna5079-protein ID=rna5079-protein|Name=rna5079|organism=Nannochloropsis gaditana|type=polypeptide|length=177bp SYLFPPSLPSPRVVVANEEELVRMLGPGNMFKTARDITYPVSLGNEERVL HTLLKMVTDALALYPTRLEDDVARLARRDDASLRPFSNRRHALIQVRGEK EVLSAFQTLCSTALTLLDVSDNVFKETVNSLYSEGNFFAANYCSDVLYRL RQEEYRRADAAAAQRSAKVNLTNPTIV back to topmRNA from alignment at CM002465.1:56706..58445+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna5079 ID=rna5079|Name=rna5079|organism=Nannochloropsis gaditana|type=mRNA|length=1740bp|location=Sequence derived from alignment at CM002465.1:56706..58445+ (Nannochloropsis gaditana) TCCTacctttttcctccgtccctcccgtcccccagggtggtggtggcgaa
cgaggaggagctcgtgCGGATGCTGGGCCCCGGAAACATGTTCAAGACTG
CCAGGGACATCACATACCCCGTCAGGTGAGGAacaaggagcaagggaggg
agggagggagggagggggggaaggcaaaggagagaaggggggaaacgggG
CTCGTGGAAGCCCCCCTAGGGCAtcgagaggaggggacagggacgAAGAT
GGGGCCAGGAAAGCCGGGAAATTGGGAGAATAGAGGGGTAAAGAGATGCC
TGGCGAGCCCCGCAGTGCCCAGAGACACTAGTATGCAGGCCATGGGCCGA
GAAGGTCGATgcctgaccctccctccccctccccctccccctcccccagt
cTGGGCAACGAAGAGAGAGtcctccacaccctcctAAAGATGGTGACAGA
CGCTCTGGCCCTGTACCCCACCCGGCTTGAGGACGACGTGGCGCGTTTGG
CGCGAAGAGACGATGCCAGCTTACGTCCGTTTTCGAACCGGCGGCACGCG
TTGAtacaggtgggaaggagcgggggaagggatggggaaaaggatgctgg
caggaggggaagagggataGGGAaatagagggagggatgccgAGGCATTT
TTATTTCTAAACGACCtcgcgcggggagggggaagacggaggaggacgta
cACGGCAGACGGGCATGCGAGTCAAGACAGATCGTCGTACCATCCCCAAC
AAACATTCTCTCTCTCATCCAGGTgcggggggaaaaggaagtctTGTCCG
CCTTCCAGACACTGTGCTCGACGGCATTGACGCTATTGGATGTGAGCGAT
AACGTCTTCAAGGTCgtgacagggaggagagggcaggcagggggagaggt
agACGATGGGTGCTTATGCCTTGTCTTGAAGAGTTTGCTTTCTTGAGCTC
ACTTACGTCTCAACTACATTTTTTCATGTATCTCATTTCAATTTAAATGA
CATTCCATGAGCAGGAGACGGTGAACAGCTTGTACAGTGAGGGTAATTTC
TTCGCGGCTAACTACTGCTCGGACGTGTTGTACCGCCTACGGCAGGTCGG
GTGGGGTCAGGGTGGTGGCACAGAGATGAAAGCTATCGTTTGACATAATC
ATTTAATCATATTTACATAAGTGAGCTGATCTTGCGAtgtatttttttaa
aatgtcATATTTGACTTATCTTCTCAGGAGGAGTATCGAAGGGCAGATGC
CGCCGCTGCTCAAAGATCTGCCAAAGTGAATCTCACAAATCCAACAATCG
TTTAAATGAAGATGTATGGATGCAAGAGATGCTGTACAACCGATAGTGTC
AACCAAAATAGGTAAATTGCTTTCGTGGGCACGCGCCCTGAAGTGGGAAG
CTcgcaaaaggaaagaaacCCCAAAAGCAAGAAATGTGCCAAAGCTCGGC
GTCATATACCCCATGGATGAAATTTGCCTTGAAGGTCTGTTACGTACAGG
CATGCGACGCTAAGTTCCCTTTTGTTCGTGTTTGGTCGGAAGCCATGACT
CCTCATTTTCGTAGCTGCTCTCTTAGAGCGGCATTTCTGGTAGGTTGATG
CTTTCACTAACTTACTGAACGAGCCATGACTGCTCTCTTGCGATCGCCTG
ACACCTAATCTTTAATGCTTTATCCACGGAAATGACCACTGCAAAGTACA
ACATGCGCAGGTGCTGTGCCATTGCCTAGACCATATATTT back to topCoding sequence (CDS) from alignment at CM002465.1:56706..58445+ >rna5079 ID=rna5079|Name=rna5079|organism=Nannochloropsis gaditana|type=CDS|length=2670bp|location=Sequence derived from alignment at CM002465.1:56706..58445+ (Nannochloropsis gaditana) TCCTacctttttcctccgtccctcccgtcccccagggtggtggtggcgaa cgaggaggagctcgtgCGGATGCTGGGCCCCGGAAACATGTTCAAGACTG CCAGGGACATCACATACCCCGTCAGtcTGGGCAACGAAGAGAGAGtcctc cacaccctcctAAAGATGGTGACAGACGCTCTGGCCCTGTACCCCACCCG GCTTGAGGACGACGTGGCGCGTTTGGCGCGAAGAGACGATGCCAGCTTAC GTCCGTTTTCGAACCGGCGGCACGCGTTGAtacagGTgcggggggaaaag gaagtctTGTCCGCCTTCCAGACACTGTGCTCGACGGCATTGACGCTATT GGATGTGAGCGATAACGTCTTCAAGGAGACGGTGAACAGCTTGTACAGTG AGGGTAATTTCTTCGCGGCTAACTACTGCTCGGACGTGTTGTACCGCCTA CGGCAGGAGGAGTATCGAAGGGCAGATGCCGCCGCTGCTCAAAGATCTGC CAAAGTGAATCTCACAAATCCAACAATCGTTTAATCCTacctttttcctc cgtccctcccgtcccccagggtggtggtggcgaacgaggaggagctcgtg CGGATGCTGGGCCCCGGAAACATGTTCAAGACTGCCAGGGACATCACATA CCCCGTCAGtcTGGGCAACGAAGAGAGAGtcctccacaccctcctAAAGA TGGTGACAGACGCTCTGGCCCTGTACCCCACCCGGCTTGAGGACGACGTG GCGCGTTTGGCGCGAAGAGACGATGCCAGCTTACGTCCGTTTTCGAACCG GCGGCACGCGTTGAtacagGTgcggggggaaaaggaagtctTGTCCGCCT TCCAGACACTGTGCTCGACGGCATTGACGCTATTGGATGTGAGCGATAAC GTCTTCAAGGAGACGGTGAACAGCTTGTACAGTGAGGGTAATTTCTTCGC GGCTAACTACTGCTCGGACGTGTTGTACCGCCTACGGCAGGAGGAGTATC GAAGGGCAGATGCCGCCGCTGCTCAAAGATCTGCCAAAGTGAATCTCACA AATCCAACAATCGTTTAATCCTacctttttcctccgtccctcccgtcccc cagggtggtggtggcgaacgaggaggagctcgtgCGGATGCTGGGCCCCG GAAACATGTTCAAGACTGCCAGGGACATCACATACCCCGTCAGtcTGGGC AACGAAGAGAGAGtcctccacaccctcctAAAGATGGTGACAGACGCTCT GGCCCTGTACCCCACCCGGCTTGAGGACGACGTGGCGCGTTTGGCGCGAA GAGACGATGCCAGCTTACGTCCGTTTTCGAACCGGCGGCACGCGTTGAta cagGTgcggggggaaaaggaagtctTGTCCGCCTTCCAGACACTGTGCTC GACGGCATTGACGCTATTGGATGTGAGCGATAACGTCTTCAAGGAGACGG TGAACAGCTTGTACAGTGAGGGTAATTTCTTCGCGGCTAACTACTGCTCG GACGTGTTGTACCGCCTACGGCAGGAGGAGTATCGAAGGGCAGATGCCGC CGCTGCTCAAAGATCTGCCAAAGTGAATCTCACAAATCCAACAATCGTTT AATCCTacctttttcctccgtccctcccgtcccccagggtggtggtggcg aacgaggaggagctcgtgCGGATGCTGGGCCCCGGAAACATGTTCAAGAC TGCCAGGGACATCACATACCCCGTCAGtcTGGGCAACGAAGAGAGAGtcc tccacaccctcctAAAGATGGTGACAGACGCTCTGGCCCTGTACCCCACC CGGCTTGAGGACGACGTGGCGCGTTTGGCGCGAAGAGACGATGCCAGCTT ACGTCCGTTTTCGAACCGGCGGCACGCGTTGAtacagGTgcggggggaaa aggaagtctTGTCCGCCTTCCAGACACTGTGCTCGACGGCATTGACGCTA TTGGATGTGAGCGATAACGTCTTCAAGGAGACGGTGAACAGCTTGTACAG TGAGGGTAATTTCTTCGCGGCTAACTACTGCTCGGACGTGTTGTACCGCC TACGGCAGGAGGAGTATCGAAGGGCAGATGCCGCCGCTGCTCAAAGATCT GCCAAAGTGAATCTCACAAATCCAACAATCGTTTAATCCTacctttttcc tccgtccctcccgtcccccagggtggtggtggcgaacgaggaggagctcg tgCGGATGCTGGGCCCCGGAAACATGTTCAAGACTGCCAGGGACATCACA TACCCCGTCAGtcTGGGCAACGAAGAGAGAGtcctccacaccctcctAAA GATGGTGACAGACGCTCTGGCCCTGTACCCCACCCGGCTTGAGGACGACG TGGCGCGTTTGGCGCGAAGAGACGATGCCAGCTTACGTCCGTTTTCGAAC CGGCGGCACGCGTTGAtacagGTgcggggggaaaaggaagtctTGTCCGC CTTCCAGACACTGTGCTCGACGGCATTGACGCTATTGGATGTGAGCGATA ACGTCTTCAAGGAGACGGTGAACAGCTTGTACAGTGAGGGTAATTTCTTC GCGGCTAACTACTGCTCGGACGTGTTGTACCGCCTACGGCAGGAGGAGTA TCGAAGGGCAGATGCCGCCGCTGCTCAAAGATCTGCCAAAGTGAATCTCA CAAATCCAACAATCGTTTAA back to top
|