EWM25606.1, cds5067 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM25606.1 vs. NCBI_GenBank
Match: gi|585107420|gb|EWM25606.1| (Rubisco LS methyltransferase, substrate-binding domain protein, partial [Nannochloropsis gaditana]) HSP 1 Score: 359.762 bits (922), Expect = 8.416e-126 Identity = 177/177 (100.00%), Postives = 177/177 (100.00%), Query Frame = 0 Query: 1 SYLFPPSLPSPRVVVANEEELVRMLGPGNMFKTARDITYPVSLGNEERVLHTLLKMVTDALALYPTRLEDDVARLARRDDASLRPFSNRRHALIQVRGEKEVLSAFQTLCSTALTLLDVSDNVFKETVNSLYSEGNFFAANYCSDVLYRLRQEEYRRADAAAAQRSAKVNLTNPTIV 177 SYLFPPSLPSPRVVVANEEELVRMLGPGNMFKTARDITYPVSLGNEERVLHTLLKMVTDALALYPTRLEDDVARLARRDDASLRPFSNRRHALIQVRGEKEVLSAFQTLCSTALTLLDVSDNVFKETVNSLYSEGNFFAANYCSDVLYRLRQEEYRRADAAAAQRSAKVNLTNPTIV Sbjct: 1 SYLFPPSLPSPRVVVANEEELVRMLGPGNMFKTARDITYPVSLGNEERVLHTLLKMVTDALALYPTRLEDDVARLARRDDASLRPFSNRRHALIQVRGEKEVLSAFQTLCSTALTLLDVSDNVFKETVNSLYSEGNFFAANYCSDVLYRLRQEEYRRADAAAAQRSAKVNLTNPTIV 177
BLAST of EWM25606.1 vs. NCBI_GenBank
Match: gi|299473350|emb|CBN77749.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 89.7373 bits (221), Expect = 1.024e-17 Identity = 63/167 (37.72%), Postives = 91/167 (54.49%), Query Frame = 0 Query: 12 RVVVANEEELVRMLGPGNMFKTARDITYPVSLGNEERVLHTLLKMVTDALALYPTRLEDDVARLARRDDASLRPFSNRRHALIQVRGEKEVLSAFQTLCSTALTLLDVSDNVFKETVNSLYSEGNFFAANYCSDVLYRLRQEEYRRADAAAAQRSAKVNLT-NPTIV 177 RV+VA+ E+ G M++T +D+ +P+S+ NE + LL + T AL YPT LE+D A L + L PFSNRRHALIQV GEK VL+ + L TAL L D E V+ +G ++CS + + +++ R A R+ +T +PTIV Sbjct: 408 RVIVADAAEM----GARYMYRTVKDVRFPLSVRNEVAAMERLLLLTTGALDAYPTTLEEDRAALK---NGGLEPFSNRRHALIQVYGEKVVLAHYVDLAETALACLAAVDTT--ELVSRCRDKGKLI-RDHCSGPIKNIYEQD-RAKGLIAPNRAWGGQMTADPTIV 563
BLAST of EWM25606.1 vs. NCBI_GenBank
Match: gi|1072235221|gb|OEU19950.1| (ribulose-1,5-bisphosphate carboxylase-like protein [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 81.2629 bits (199), Expect = 1.021e-14 Identity = 64/177 (36.16%), Postives = 82/177 (46.33%), Query Frame = 0 Query: 31 FKTARDITYPVSLGNEERVLHTLLKMVTDALALYPTRLEDDVARLARRDDASLRPFSNRRHALIQVRGEKEVLSAFQTLCSTALTLLDVSD------------------NVFKETVNSLYSEG-----------------NFFAANYCSDVLYRLRQEEYR-----RADAAAAQRSA 167 +++ RDI +P+SL NE + LL++++ ALA YPT L D L+ D+ PFSN RHA IQVRGEKEVL F TAL +LDV + V NS S G + YCSDVL LR+EE + RA AA +S Sbjct: 438 YRSCRDIRHPLSLRNERMAMMNLLQIISIALAQYPTALSIDKVDLS--DEGLYPPFSNVRHAKIQVRGEKEVLHHFARWARTALEVLDVIELELREEQQRGGVEVQLGRGVIVSNENSSRSCGYESIIRRMEEEEDDDGVHHTIVRYCSDVLGSLRREELKSLRRQRATLAAVVKSG 612
BLAST of EWM25606.1 vs. NCBI_GenBank
Match: gi|1210523407|dbj|GAX17731.1| (hypothetical protein FisN_24Hh203 [Fistulifera solaris]) HSP 1 Score: 80.8777 bits (198), Expect = 1.281e-14 Identity = 62/183 (33.88%), Postives = 84/183 (45.90%), Query Frame = 0 Query: 6 PSLPSPRVVVANEEELVRMLGPGNMFKTARDITYPVSLGNEERVLHTLLKMVTDALALYPTRLEDDVARLARRDDASLRPFSNRRHALIQVRGEKEVLSAFQTLCSTALTLLDVSDNVFKETVNSL------------YSE--------------------GNFFAANYCSDVLYRLRQEEYR 156 P LPS V+ M ++ RDI +PVSL NE L LL++V L+ Y T L +D L D+ + FSN+RHA IQVRGEKEVL F +TAL +LDV + +E S+ + E G+ YC+DVL LR+EE++ Sbjct: 432 PELPSSNSVLTGSP----MPFGATYHRSCRDIRHPVSLRNERAALRLLLQIVERHLSAYSTTLAEDETDLL--DELAYPRFSNKRHAKIQVRGEKEVLHHFARWATTALEVLDVIEEELQEERGSIEVSSTGRVSVVNHEERPSFDFLIQRMEDDAESRDIGHHTIVRYCADVLGSLRREEFK 608
BLAST of EWM25606.1 vs. NCBI_GenBank
Match: gi|224012755|ref|XP_002295030.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220969469|gb|EED87810.1| predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 80.8777 bits (198), Expect = 1.284e-14 Identity = 41/95 (43.16%), Postives = 58/95 (61.05%), Query Frame = 0 Query: 25 LGPGNMFKTARDITYPVSLGNEERVLHTLLKMVTDALALYPTRLEDDVARLARRDDASLRPFSNRRHALIQVRGEKEVLSAFQTLCSTALTLLDV 119 L + +T RDI YP++L NE R + LL+++ AL+ YPT L D A L D+ S +SN+RHA +QV GEKEVL F TA+ ++D+ Sbjct: 568 LSSSHSLRTCRDIRYPINLNNERRAMELLLEIIGRALSKYPTSLAQDTADLL--DEKSFPKYSNKRHAKLQVHGEKEVLHHFALWARTAIRVIDI 660
BLAST of EWM25606.1 vs. NCBI_GenBank
Match: gi|1210518305|dbj|GAX22917.1| (hypothetical protein FisN_24Lh203 [Fistulifera solaris]) HSP 1 Score: 79.7221 bits (195), Expect = 3.537e-14 Identity = 56/157 (35.67%), Postives = 76/157 (48.41%), Query Frame = 0 Query: 32 KTARDITYPVSLGNEERVLHTLLKMVTDALALYPTRLEDDVARLARRDDASLRPFSNRRHALIQVRGEKEVLSAFQTLCSTALTLLDVSDNVFKETVNSL------------YSE--------------------GNFFAANYCSDVLYRLRQEEYR 156 ++ RDI +PVSL NE L LL++V L+ Y T L DV L D+ + FSN+RHA IQVRGEKEVL F +T L +LDV + +E S+ + E G+ YC+DVL LR+EE++ Sbjct: 444 RSCRDIRHPVSLRNERAALRLLLQIVERHLSEYSTTLAADVTDLL--DELAYPRFSNKRHAKIQVRGEKEVLHHFARWATTGLEVLDVIEEELQEERGSIEVSSTGRVSVVSHEERPSFDYMIQRMEEDAESRDIGHHTIVRYCADVLGSLRREEFK 598
BLAST of EWM25606.1 vs. NCBI_GenBank
Match: gi|397645867|gb|EJK77018.1| (hypothetical protein THAOC_01180 [Thalassiosira oceanica]) HSP 1 Score: 74.3294 bits (181), Expect = 1.154e-12 Identity = 44/113 (38.94%), Postives = 65/113 (57.52%), Query Frame = 0 Query: 12 RVVVANEEELVRMLGPGNMFK-----TARDITYPVSLGNEERVLHTLLKMVTDALALYPTRLEDDVARLARRDDASLRPFSNRRHALIQVRGEKEVLSAFQTLCSTALTLLDV 119 RV+ + EL R++G + D+ YP+SL NE R + LL++ L+ YPT L D+ LA D+ +L +SN R+A +QVRGEKEVL+ F TA+ ++DV Sbjct: 114 RVLACDSGELDRIVGVAGRHSALPSFSGTDVRYPISLRNERRAMELLLEVTRRGLSGYPTSLAQDIRDLA--DEVALPRYSNARNARLQVRGEKEVLNHFALWSRTAMHVIDV 224
BLAST of EWM25606.1 vs. NCBI_GenBank
Match: gi|698811972|ref|XP_009839015.1| (hypothetical protein H257_13249 [Aphanomyces astaci] >gi|574105828|gb|ETV71349.1| hypothetical protein H257_13249 [Aphanomyces astaci]) HSP 1 Score: 65.0846 bits (157), Expect = 3.242e-9 Identity = 46/148 (31.08%), Postives = 69/148 (46.62%), Query Frame = 0 Query: 12 RVVVANEEELVRMLGPGNMFKTARDITYPVSLGNEERVLHTLLKMVTDALALYPTRLEDDVARLARRDDASLRPFSNRRHALIQVRGEKEVLSAFQTLCSTALTLLDVSDNVFKETVNSLYSEGNFFAANYCSDVLYRLRQEEYRRAD 159 R++V+++ E RM P+SL NE R L L + T L Y T L DD A L + ++ PFSNR AL VRGEK+V + FQ L A +L + + +Y + + + Y +DV+ L + + D Sbjct: 365 RLIVSSDAEFERMAATAPAHAVP-----PLSLDNERRALQHLGALATVQLYQYATTLADDTAML---ESGAIDPFSNRAQALYFVRGEKQVCAHFQQLAHEAQRVLSLPPHEAASVCRDMYEDADDVMSCYLADVIGYLVPASHNKQD 504
BLAST of EWM25606.1 vs. NCBI_GenBank
Match: gi|219126444|ref|XP_002183467.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217405223|gb|EEC45167.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 64.3142 bits (155), Expect = 7.373e-9 Identity = 48/129 (37.21%), Postives = 62/129 (48.06%), Query Frame = 0 Query: 61 LALYPTRLEDDVARLARRDDASLRPFSNRRHALIQVRGEKEVLSAFQTLCSTALTLLDVSDNVFKETVN-------------SLYSEG----NF---------------FAANYCSDVLYRLRQEEYRR 157 LA YPT + D+A L +D+AS FSNRRHA IQVRGEKEVL F+ TAL +L ++ KE S+ + G NF YC+DVL LR+EE++ Sbjct: 364 LASYPTTISQDMADL--QDEASYPQFSNRRHAKIQVRGEKEVLHHFRVWSETALDMLTFIEDELKEQQQGNVEVELLQNNRTSVTTTGQGVVNFDDVIRDMEQDDDVHHTILRYCADVLGSLRREEFKH 490
BLAST of EWM25606.1 vs. NCBI_GenBank
Match: gi|673018582|ref|XP_008863252.1| (hypothetical protein H310_01788 [Aphanomyces invadans] >gi|574480166|gb|ETW07159.1| hypothetical protein H310_01788 [Aphanomyces invadans]) HSP 1 Score: 63.5438 bits (153), Expect = 1.428e-8 Identity = 46/136 (33.82%), Postives = 66/136 (48.53%), Query Frame = 0 Query: 12 RVVVANEEELVRMLGPGNMFKTARDITYPVSLGNEERVLHTLLKMVTDALALYPTRLEDDVARLARRDDASLRPFSNRRHALIQVRGEKEVLSAFQTLCSTALTLLDVSDNVFKETVNSLYSEGNFFAANYCSDVL 147 R++VA +E M+G + PVSL NE R L L ++T L Y T L DD A L A+ P+SNR AL VRGEK+V + +Q L A +L + + LY + + + Y +DV+ Sbjct: 359 RLIVATADEFEHMVGSAPAHASP-----PVSLNNERRALQHLGALMTVQLYQYQTTLADDNAMLESPAIAN-DPYSNRAQALYFVRGEKQVCAHYQQLAHEAQRVLTQPADAIRAISRDLYEDNDDVLSCYLADVI 488 The following BLAST results are available for this feature:
BLAST of EWM25606.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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