EWM25606.1, cds5067 (CDS) Nannochloropsis gaditana

Overview
NameEWM25606.1
Unique Namecds5067
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002465.1:56706..56830 +
Alignment locationCM002465.1:57105..57264 +
Alignment locationCM002465.1:57478..57567 +
Alignment locationCM002465.1:57720..57800 +
Alignment locationCM002465.1:57933..58010 +

Link to JBrowse

Properties
Property NameValue
Start range56706
Start range.
Protein idEWM25606.1
ProductRubisco LS methyltransferase, substrate-binding domain protein
Partialtrue
Orig transcript idgnl|cribi|Naga_100543g4.5681.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:56706..56830 +
CM002465.1supercontigCM002465.1:57105..57264 +
CM002465.1supercontigCM002465.1:57478..57567 +
CM002465.1supercontigCM002465.1:57720..57800 +
CM002465.1supercontigCM002465.1:57933..58010 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR015353Rubisco_LSMT_subst-bd
Homology
BLAST of EWM25606.1 vs. NCBI_GenBank
Match: gi|585107420|gb|EWM25606.1| (Rubisco LS methyltransferase, substrate-binding domain protein, partial [Nannochloropsis gaditana])

HSP 1 Score: 359.762 bits (922), Expect = 8.416e-126
Identity = 177/177 (100.00%), Postives = 177/177 (100.00%), Query Frame = 0
Query:    1 SYLFPPSLPSPRVVVANEEELVRMLGPGNMFKTARDITYPVSLGNEERVLHTLLKMVTDALALYPTRLEDDVARLARRDDASLRPFSNRRHALIQVRGEKEVLSAFQTLCSTALTLLDVSDNVFKETVNSLYSEGNFFAANYCSDVLYRLRQEEYRRADAAAAQRSAKVNLTNPTIV 177
            SYLFPPSLPSPRVVVANEEELVRMLGPGNMFKTARDITYPVSLGNEERVLHTLLKMVTDALALYPTRLEDDVARLARRDDASLRPFSNRRHALIQVRGEKEVLSAFQTLCSTALTLLDVSDNVFKETVNSLYSEGNFFAANYCSDVLYRLRQEEYRRADAAAAQRSAKVNLTNPTIV
Sbjct:    1 SYLFPPSLPSPRVVVANEEELVRMLGPGNMFKTARDITYPVSLGNEERVLHTLLKMVTDALALYPTRLEDDVARLARRDDASLRPFSNRRHALIQVRGEKEVLSAFQTLCSTALTLLDVSDNVFKETVNSLYSEGNFFAANYCSDVLYRLRQEEYRRADAAAAQRSAKVNLTNPTIV 177          
BLAST of EWM25606.1 vs. NCBI_GenBank
Match: gi|299473350|emb|CBN77749.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 89.7373 bits (221), Expect = 1.024e-17
Identity = 63/167 (37.72%), Postives = 91/167 (54.49%), Query Frame = 0
Query:   12 RVVVANEEELVRMLGPGNMFKTARDITYPVSLGNEERVLHTLLKMVTDALALYPTRLEDDVARLARRDDASLRPFSNRRHALIQVRGEKEVLSAFQTLCSTALTLLDVSDNVFKETVNSLYSEGNFFAANYCSDVLYRLRQEEYRRADAAAAQRSAKVNLT-NPTIV 177
            RV+VA+  E+    G   M++T +D+ +P+S+ NE   +  LL + T AL  YPT LE+D A L    +  L PFSNRRHALIQV GEK VL+ +  L  TAL  L   D    E V+    +G     ++CS  +  + +++ R     A  R+    +T +PTIV
Sbjct:  408 RVIVADAAEM----GARYMYRTVKDVRFPLSVRNEVAAMERLLLLTTGALDAYPTTLEEDRAALK---NGGLEPFSNRRHALIQVYGEKVVLAHYVDLAETALACLAAVDTT--ELVSRCRDKGKLI-RDHCSGPIKNIYEQD-RAKGLIAPNRAWGGQMTADPTIV 563          
BLAST of EWM25606.1 vs. NCBI_GenBank
Match: gi|1072235221|gb|OEU19950.1| (ribulose-1,5-bisphosphate carboxylase-like protein [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 81.2629 bits (199), Expect = 1.021e-14
Identity = 64/177 (36.16%), Postives = 82/177 (46.33%), Query Frame = 0
Query:   31 FKTARDITYPVSLGNEERVLHTLLKMVTDALALYPTRLEDDVARLARRDDASLRPFSNRRHALIQVRGEKEVLSAFQTLCSTALTLLDVSD------------------NVFKETVNSLYSEG-----------------NFFAANYCSDVLYRLRQEEYR-----RADAAAAQRSA 167
            +++ RDI +P+SL NE   +  LL++++ ALA YPT L  D   L+  D+    PFSN RHA IQVRGEKEVL  F     TAL +LDV +                   V     NS  S G                 +     YCSDVL  LR+EE +     RA  AA  +S 
Sbjct:  438 YRSCRDIRHPLSLRNERMAMMNLLQIISIALAQYPTALSIDKVDLS--DEGLYPPFSNVRHAKIQVRGEKEVLHHFARWARTALEVLDVIELELREEQQRGGVEVQLGRGVIVSNENSSRSCGYESIIRRMEEEEDDDGVHHTIVRYCSDVLGSLRREELKSLRRQRATLAAVVKSG 612          
BLAST of EWM25606.1 vs. NCBI_GenBank
Match: gi|1210523407|dbj|GAX17731.1| (hypothetical protein FisN_24Hh203 [Fistulifera solaris])

HSP 1 Score: 80.8777 bits (198), Expect = 1.281e-14
Identity = 62/183 (33.88%), Postives = 84/183 (45.90%), Query Frame = 0
Query:    6 PSLPSPRVVVANEEELVRMLGPGNMFKTARDITYPVSLGNEERVLHTLLKMVTDALALYPTRLEDDVARLARRDDASLRPFSNRRHALIQVRGEKEVLSAFQTLCSTALTLLDVSDNVFKETVNSL------------YSE--------------------GNFFAANYCSDVLYRLRQEEYR 156
            P LPS   V+        M       ++ RDI +PVSL NE   L  LL++V   L+ Y T L +D   L   D+ +   FSN+RHA IQVRGEKEVL  F    +TAL +LDV +   +E   S+            + E                    G+     YC+DVL  LR+EE++
Sbjct:  432 PELPSSNSVLTGSP----MPFGATYHRSCRDIRHPVSLRNERAALRLLLQIVERHLSAYSTTLAEDETDLL--DELAYPRFSNKRHAKIQVRGEKEVLHHFARWATTALEVLDVIEEELQEERGSIEVSSTGRVSVVNHEERPSFDFLIQRMEDDAESRDIGHHTIVRYCADVLGSLRREEFK 608          
BLAST of EWM25606.1 vs. NCBI_GenBank
Match: gi|224012755|ref|XP_002295030.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220969469|gb|EED87810.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 80.8777 bits (198), Expect = 1.284e-14
Identity = 41/95 (43.16%), Postives = 58/95 (61.05%), Query Frame = 0
Query:   25 LGPGNMFKTARDITYPVSLGNEERVLHTLLKMVTDALALYPTRLEDDVARLARRDDASLRPFSNRRHALIQVRGEKEVLSAFQTLCSTALTLLDV 119
            L   +  +T RDI YP++L NE R +  LL+++  AL+ YPT L  D A L   D+ S   +SN+RHA +QV GEKEVL  F     TA+ ++D+
Sbjct:  568 LSSSHSLRTCRDIRYPINLNNERRAMELLLEIIGRALSKYPTSLAQDTADLL--DEKSFPKYSNKRHAKLQVHGEKEVLHHFALWARTAIRVIDI 660          
BLAST of EWM25606.1 vs. NCBI_GenBank
Match: gi|1210518305|dbj|GAX22917.1| (hypothetical protein FisN_24Lh203 [Fistulifera solaris])

HSP 1 Score: 79.7221 bits (195), Expect = 3.537e-14
Identity = 56/157 (35.67%), Postives = 76/157 (48.41%), Query Frame = 0
Query:   32 KTARDITYPVSLGNEERVLHTLLKMVTDALALYPTRLEDDVARLARRDDASLRPFSNRRHALIQVRGEKEVLSAFQTLCSTALTLLDVSDNVFKETVNSL------------YSE--------------------GNFFAANYCSDVLYRLRQEEYR 156
            ++ RDI +PVSL NE   L  LL++V   L+ Y T L  DV  L   D+ +   FSN+RHA IQVRGEKEVL  F    +T L +LDV +   +E   S+            + E                    G+     YC+DVL  LR+EE++
Sbjct:  444 RSCRDIRHPVSLRNERAALRLLLQIVERHLSEYSTTLAADVTDLL--DELAYPRFSNKRHAKIQVRGEKEVLHHFARWATTGLEVLDVIEEELQEERGSIEVSSTGRVSVVSHEERPSFDYMIQRMEEDAESRDIGHHTIVRYCADVLGSLRREEFK 598          
BLAST of EWM25606.1 vs. NCBI_GenBank
Match: gi|397645867|gb|EJK77018.1| (hypothetical protein THAOC_01180 [Thalassiosira oceanica])

HSP 1 Score: 74.3294 bits (181), Expect = 1.154e-12
Identity = 44/113 (38.94%), Postives = 65/113 (57.52%), Query Frame = 0
Query:   12 RVVVANEEELVRMLGPGNMFK-----TARDITYPVSLGNEERVLHTLLKMVTDALALYPTRLEDDVARLARRDDASLRPFSNRRHALIQVRGEKEVLSAFQTLCSTALTLLDV 119
            RV+  +  EL R++G           +  D+ YP+SL NE R +  LL++    L+ YPT L  D+  LA  D+ +L  +SN R+A +QVRGEKEVL+ F     TA+ ++DV
Sbjct:  114 RVLACDSGELDRIVGVAGRHSALPSFSGTDVRYPISLRNERRAMELLLEVTRRGLSGYPTSLAQDIRDLA--DEVALPRYSNARNARLQVRGEKEVLNHFALWSRTAMHVIDV 224          
BLAST of EWM25606.1 vs. NCBI_GenBank
Match: gi|698811972|ref|XP_009839015.1| (hypothetical protein H257_13249 [Aphanomyces astaci] >gi|574105828|gb|ETV71349.1| hypothetical protein H257_13249 [Aphanomyces astaci])

HSP 1 Score: 65.0846 bits (157), Expect = 3.242e-9
Identity = 46/148 (31.08%), Postives = 69/148 (46.62%), Query Frame = 0
Query:   12 RVVVANEEELVRMLGPGNMFKTARDITYPVSLGNEERVLHTLLKMVTDALALYPTRLEDDVARLARRDDASLRPFSNRRHALIQVRGEKEVLSAFQTLCSTALTLLDVSDNVFKETVNSLYSEGNFFAANYCSDVLYRLRQEEYRRAD 159
            R++V+++ E  RM               P+SL NE R L  L  + T  L  Y T L DD A L   +  ++ PFSNR  AL  VRGEK+V + FQ L   A  +L +  +        +Y + +   + Y +DV+  L    + + D
Sbjct:  365 RLIVSSDAEFERMAATAPAHAVP-----PLSLDNERRALQHLGALATVQLYQYATTLADDTAML---ESGAIDPFSNRAQALYFVRGEKQVCAHFQQLAHEAQRVLSLPPHEAASVCRDMYEDADDVMSCYLADVIGYLVPASHNKQD 504          
BLAST of EWM25606.1 vs. NCBI_GenBank
Match: gi|219126444|ref|XP_002183467.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217405223|gb|EEC45167.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 64.3142 bits (155), Expect = 7.373e-9
Identity = 48/129 (37.21%), Postives = 62/129 (48.06%), Query Frame = 0
Query:   61 LALYPTRLEDDVARLARRDDASLRPFSNRRHALIQVRGEKEVLSAFQTLCSTALTLLDVSDNVFKETVN-------------SLYSEG----NF---------------FAANYCSDVLYRLRQEEYRR 157
            LA YPT +  D+A L  +D+AS   FSNRRHA IQVRGEKEVL  F+    TAL +L   ++  KE                S+ + G    NF                   YC+DVL  LR+EE++ 
Sbjct:  364 LASYPTTISQDMADL--QDEASYPQFSNRRHAKIQVRGEKEVLHHFRVWSETALDMLTFIEDELKEQQQGNVEVELLQNNRTSVTTTGQGVVNFDDVIRDMEQDDDVHHTILRYCADVLGSLRREEFKH 490          
BLAST of EWM25606.1 vs. NCBI_GenBank
Match: gi|673018582|ref|XP_008863252.1| (hypothetical protein H310_01788 [Aphanomyces invadans] >gi|574480166|gb|ETW07159.1| hypothetical protein H310_01788 [Aphanomyces invadans])

HSP 1 Score: 63.5438 bits (153), Expect = 1.428e-8
Identity = 46/136 (33.82%), Postives = 66/136 (48.53%), Query Frame = 0
Query:   12 RVVVANEEELVRMLGPGNMFKTARDITYPVSLGNEERVLHTLLKMVTDALALYPTRLEDDVARLARRDDASLRPFSNRRHALIQVRGEKEVLSAFQTLCSTALTLLDVSDNVFKETVNSLYSEGNFFAANYCSDVL 147
            R++VA  +E   M+G      +      PVSL NE R L  L  ++T  L  Y T L DD A L     A+  P+SNR  AL  VRGEK+V + +Q L   A  +L    +  +     LY + +   + Y +DV+
Sbjct:  359 RLIVATADEFEHMVGSAPAHASP-----PVSLNNERRALQHLGALMTVQLYQYQTTLADDNAMLESPAIAN-DPYSNRAQALYFVRGEKQVCAHYQQLAHEAQRVLTQPADAIRAISRDLYEDNDDVLSCYLADVI 488          
The following BLAST results are available for this feature:
BLAST of EWM25606.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585107420|gb|EWM25606.1|8.416e-126100.00Rubisco LS methyltransferase, substrate-binding do... [more]
gi|299473350|emb|CBN77749.1|1.024e-1737.72conserved unknown protein [Ectocarpus siliculosus][more]
gi|1072235221|gb|OEU19950.1|1.021e-1436.16ribulose-1,5-bisphosphate carboxylase-like protein... [more]
gi|1210523407|dbj|GAX17731.1|1.281e-1433.88hypothetical protein FisN_24Hh203 [Fistulifera sol... [more]
gi|224012755|ref|XP_002295030.1|1.284e-1443.16predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|1210518305|dbj|GAX22917.1|3.537e-1435.67hypothetical protein FisN_24Lh203 [Fistulifera sol... [more]
gi|397645867|gb|EJK77018.1|1.154e-1238.94hypothetical protein THAOC_01180 [Thalassiosira oc... [more]
gi|698811972|ref|XP_009839015.1|3.242e-931.08hypothetical protein H257_13249 [Aphanomyces astac... [more]
gi|219126444|ref|XP_002183467.1|7.373e-937.21predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|673018582|ref|XP_008863252.1|1.428e-833.82hypothetical protein H310_01788 [Aphanomyces invad... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5079rna5079Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications