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Properties
| Property Name | Value |
|---|
| Product | Rubisco LS methyltransferase, substrate-binding domain protein |
| Orig transcript id | gnl|cribi|Naga_100543g4.5681.mrna |
| Orig protein id | gnl|cribi|Naga_100543g4.5681 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002465.1 | supercontig | CM002465.1:56706..58445 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna5079 ID=rna5079|Name=rna5079|organism=Nannochloropsis gaditana|type=mRNA|length=1167bp
ACATTGTGTCAACATGCTGGTTTCATTTCCACAGCTTTTGCAGTCATCGA
TCTTGTCCACAACGATAATTTTCCAGGCAGGGCGGTGGCTCGGAGGGGAG
GCATACTGCTTCACTTTTGGCTGTTTTGGCATTAAATTTGTCCTGCCATT
TCTACATCATCCTTGATACGGCTGCTACATTAAGAAATTAAGTAGAGGTG
TACAACGCCGTAGACGAAGCATGCAACTGGATGCGGGAGTGAGCAGCAGT
GGAGGTACCGCAGACGAGTCCGCTGTCAACAAATACGACCGGTTCTTAAA
ATGGCTTTTGGACAACGGCGCACACTTTCCTCTACTAGAATTGAGGGAGT
ACGAATCCGACGTCCGCGGGGTGCACGCGAAGGAGGCGCTGGCAGGCGAT
CAGGTGGTGGTGGAAATTCCCCTCCGGTGCCTGATCACGGTGGAGATGGG
GAAGGAGTCCGACGTGGGAAAAGCGGTGCTCGCGTCCAATTTGCCCCTGG
ACGCACCCAAGCACATCTTCTTGATGCTCTTCATGCTCACGGACAGGCGG
AACCCGTCCTCCTTCTTTAAGCCCTACTACGATATCCTTCCCTCCTCCTT
GTCGAACATGCCGATCTTCTGGACGGATGAGGAACTGGCTTACCTGAAAG
GCTCCCACCTCCTGACCCAGATCGAGGAACGGAAGCGTGCCATTGAAGCC
GACTACGCGGCCATCGCCGACGTGGCTCCCTCTCTCCCCTCCATCTGCTC
AGTGGAGGAGTTCAAGTGGGCCCGTATGTGCGTCTGTTCGCGCAATTTTG
GTCTGGAGGTGAACAGAATCAGGACGGCGGCCTTGGTCCCCTACGCAGAT
ATGCTCAACCACCAGCGGCCCCGCGAAACCAAGTGGACCTTCGACAACGC
TCGTCAGGCTTTTACTATCACGACGCTCCAGCCCATCGCCCCCGGGGCCC
AGGTCTATGATTCATACGGCCAGAAGTGTAACCACCGCTTCCTTCTCAAC
TACGGTTTCGCCGTGGAAAATAACAGAGAAGCAGATAATTTCTGTCCAAA
CGAGGTCGGGTTGTGGCAGGAGAGAGCGAGGAAGGGGGAGAGGGAAAGAG
GTACAATGGGATGATTCCCGCACGAAAATTGTAGCACTTAAAAGAATTGT
TCTCCCTACCCTCCTCC back to topprotein sequence of rna5079 >rna5079-protein ID=rna5079-protein|Name=rna5079|organism=Nannochloropsis gaditana|type=polypeptide|length=177bp
SYLFPPSLPSPRVVVANEEELVRMLGPGNMFKTARDITYPVSLGNEERVL
HTLLKMVTDALALYPTRLEDDVARLARRDDASLRPFSNRRHALIQVRGEK
EVLSAFQTLCSTALTLLDVSDNVFKETVNSLYSEGNFFAANYCSDVLYRL
RQEEYRRADAAAAQRSAKVNLTNPTIV back to topmRNA from alignment at CM002465.1:56706..58445+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna5079 ID=rna5079|Name=rna5079|organism=Nannochloropsis gaditana|type=mRNA|length=1740bp|location=Sequence derived from alignment at CM002465.1:56706..58445+ (Nannochloropsis gaditana)
TCCTacctttttcctccgtccctcccgtcccccagggtggtggtggcgaa
cgaggaggagctcgtgCGGATGCTGGGCCCCGGAAACATGTTCAAGACTG
CCAGGGACATCACATACCCCGTCAGGTGAGGAacaaggagcaagggaggg
agggagggagggagggggggaaggcaaaggagagaaggggggaaacgggG
CTCGTGGAAGCCCCCCTAGGGCAtcgagaggaggggacagggacgAAGAT
GGGGCCAGGAAAGCCGGGAAATTGGGAGAATAGAGGGGTAAAGAGATGCC
TGGCGAGCCCCGCAGTGCCCAGAGACACTAGTATGCAGGCCATGGGCCGA
GAAGGTCGATgcctgaccctccctccccctccccctccccctcccccagt
cTGGGCAACGAAGAGAGAGtcctccacaccctcctAAAGATGGTGACAGA
CGCTCTGGCCCTGTACCCCACCCGGCTTGAGGACGACGTGGCGCGTTTGG
CGCGAAGAGACGATGCCAGCTTACGTCCGTTTTCGAACCGGCGGCACGCG
TTGAtacaggtgggaaggagcgggggaagggatggggaaaaggatgctgg
caggaggggaagagggataGGGAaatagagggagggatgccgAGGCATTT
TTATTTCTAAACGACCtcgcgcggggagggggaagacggaggaggacgta
cACGGCAGACGGGCATGCGAGTCAAGACAGATCGTCGTACCATCCCCAAC
AAACATTCTCTCTCTCATCCAGGTgcggggggaaaaggaagtctTGTCCG
CCTTCCAGACACTGTGCTCGACGGCATTGACGCTATTGGATGTGAGCGAT
AACGTCTTCAAGGTCgtgacagggaggagagggcaggcagggggagaggt
agACGATGGGTGCTTATGCCTTGTCTTGAAGAGTTTGCTTTCTTGAGCTC
ACTTACGTCTCAACTACATTTTTTCATGTATCTCATTTCAATTTAAATGA
CATTCCATGAGCAGGAGACGGTGAACAGCTTGTACAGTGAGGGTAATTTC
TTCGCGGCTAACTACTGCTCGGACGTGTTGTACCGCCTACGGCAGGTCGG
GTGGGGTCAGGGTGGTGGCACAGAGATGAAAGCTATCGTTTGACATAATC
ATTTAATCATATTTACATAAGTGAGCTGATCTTGCGAtgtatttttttaa
aatgtcATATTTGACTTATCTTCTCAGGAGGAGTATCGAAGGGCAGATGC
CGCCGCTGCTCAAAGATCTGCCAAAGTGAATCTCACAAATCCAACAATCG
TTTAAATGAAGATGTATGGATGCAAGAGATGCTGTACAACCGATAGTGTC
AACCAAAATAGGTAAATTGCTTTCGTGGGCACGCGCCCTGAAGTGGGAAG
CTcgcaaaaggaaagaaacCCCAAAAGCAAGAAATGTGCCAAAGCTCGGC
GTCATATACCCCATGGATGAAATTTGCCTTGAAGGTCTGTTACGTACAGG
CATGCGACGCTAAGTTCCCTTTTGTTCGTGTTTGGTCGGAAGCCATGACT
CCTCATTTTCGTAGCTGCTCTCTTAGAGCGGCATTTCTGGTAGGTTGATG
CTTTCACTAACTTACTGAACGAGCCATGACTGCTCTCTTGCGATCGCCTG
ACACCTAATCTTTAATGCTTTATCCACGGAAATGACCACTGCAAAGTACA
ACATGCGCAGGTGCTGTGCCATTGCCTAGACCATATATTT back to topCoding sequence (CDS) from alignment at CM002465.1:56706..58445+ >rna5079 ID=rna5079|Name=rna5079|organism=Nannochloropsis gaditana|type=CDS|length=2670bp|location=Sequence derived from alignment at CM002465.1:56706..58445+ (Nannochloropsis gaditana)
TCCTacctttttcctccgtccctcccgtcccccagggtggtggtggcgaa
cgaggaggagctcgtgCGGATGCTGGGCCCCGGAAACATGTTCAAGACTG
CCAGGGACATCACATACCCCGTCAGtcTGGGCAACGAAGAGAGAGtcctc
cacaccctcctAAAGATGGTGACAGACGCTCTGGCCCTGTACCCCACCCG
GCTTGAGGACGACGTGGCGCGTTTGGCGCGAAGAGACGATGCCAGCTTAC
GTCCGTTTTCGAACCGGCGGCACGCGTTGAtacagGTgcggggggaaaag
gaagtctTGTCCGCCTTCCAGACACTGTGCTCGACGGCATTGACGCTATT
GGATGTGAGCGATAACGTCTTCAAGGAGACGGTGAACAGCTTGTACAGTG
AGGGTAATTTCTTCGCGGCTAACTACTGCTCGGACGTGTTGTACCGCCTA
CGGCAGGAGGAGTATCGAAGGGCAGATGCCGCCGCTGCTCAAAGATCTGC
CAAAGTGAATCTCACAAATCCAACAATCGTTTAATCCTacctttttcctc
cgtccctcccgtcccccagggtggtggtggcgaacgaggaggagctcgtg
CGGATGCTGGGCCCCGGAAACATGTTCAAGACTGCCAGGGACATCACATA
CCCCGTCAGtcTGGGCAACGAAGAGAGAGtcctccacaccctcctAAAGA
TGGTGACAGACGCTCTGGCCCTGTACCCCACCCGGCTTGAGGACGACGTG
GCGCGTTTGGCGCGAAGAGACGATGCCAGCTTACGTCCGTTTTCGAACCG
GCGGCACGCGTTGAtacagGTgcggggggaaaaggaagtctTGTCCGCCT
TCCAGACACTGTGCTCGACGGCATTGACGCTATTGGATGTGAGCGATAAC
GTCTTCAAGGAGACGGTGAACAGCTTGTACAGTGAGGGTAATTTCTTCGC
GGCTAACTACTGCTCGGACGTGTTGTACCGCCTACGGCAGGAGGAGTATC
GAAGGGCAGATGCCGCCGCTGCTCAAAGATCTGCCAAAGTGAATCTCACA
AATCCAACAATCGTTTAATCCTacctttttcctccgtccctcccgtcccc
cagggtggtggtggcgaacgaggaggagctcgtgCGGATGCTGGGCCCCG
GAAACATGTTCAAGACTGCCAGGGACATCACATACCCCGTCAGtcTGGGC
AACGAAGAGAGAGtcctccacaccctcctAAAGATGGTGACAGACGCTCT
GGCCCTGTACCCCACCCGGCTTGAGGACGACGTGGCGCGTTTGGCGCGAA
GAGACGATGCCAGCTTACGTCCGTTTTCGAACCGGCGGCACGCGTTGAta
cagGTgcggggggaaaaggaagtctTGTCCGCCTTCCAGACACTGTGCTC
GACGGCATTGACGCTATTGGATGTGAGCGATAACGTCTTCAAGGAGACGG
TGAACAGCTTGTACAGTGAGGGTAATTTCTTCGCGGCTAACTACTGCTCG
GACGTGTTGTACCGCCTACGGCAGGAGGAGTATCGAAGGGCAGATGCCGC
CGCTGCTCAAAGATCTGCCAAAGTGAATCTCACAAATCCAACAATCGTTT
AATCCTacctttttcctccgtccctcccgtcccccagggtggtggtggcg
aacgaggaggagctcgtgCGGATGCTGGGCCCCGGAAACATGTTCAAGAC
TGCCAGGGACATCACATACCCCGTCAGtcTGGGCAACGAAGAGAGAGtcc
tccacaccctcctAAAGATGGTGACAGACGCTCTGGCCCTGTACCCCACC
CGGCTTGAGGACGACGTGGCGCGTTTGGCGCGAAGAGACGATGCCAGCTT
ACGTCCGTTTTCGAACCGGCGGCACGCGTTGAtacagGTgcggggggaaa
aggaagtctTGTCCGCCTTCCAGACACTGTGCTCGACGGCATTGACGCTA
TTGGATGTGAGCGATAACGTCTTCAAGGAGACGGTGAACAGCTTGTACAG
TGAGGGTAATTTCTTCGCGGCTAACTACTGCTCGGACGTGTTGTACCGCC
TACGGCAGGAGGAGTATCGAAGGGCAGATGCCGCCGCTGCTCAAAGATCT
GCCAAAGTGAATCTCACAAATCCAACAATCGTTTAATCCTacctttttcc
tccgtccctcccgtcccccagggtggtggtggcgaacgaggaggagctcg
tgCGGATGCTGGGCCCCGGAAACATGTTCAAGACTGCCAGGGACATCACA
TACCCCGTCAGtcTGGGCAACGAAGAGAGAGtcctccacaccctcctAAA
GATGGTGACAGACGCTCTGGCCCTGTACCCCACCCGGCTTGAGGACGACG
TGGCGCGTTTGGCGCGAAGAGACGATGCCAGCTTACGTCCGTTTTCGAAC
CGGCGGCACGCGTTGAtacagGTgcggggggaaaaggaagtctTGTCCGC
CTTCCAGACACTGTGCTCGACGGCATTGACGCTATTGGATGTGAGCGATA
ACGTCTTCAAGGAGACGGTGAACAGCTTGTACAGTGAGGGTAATTTCTTC
GCGGCTAACTACTGCTCGGACGTGTTGTACCGCCTACGGCAGGAGGAGTA
TCGAAGGGCAGATGCCGCCGCTGCTCAAAGATCTGCCAAAGTGAATCTCA
CAAATCCAACAATCGTTTAA back to top
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