rna5046, rna5046 (mRNA) Nannochloropsis gaditana

Overview
Namerna5046
Unique Namerna5046
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1218
Alignment locationCM002464.1:1040845..1041886 +

Link to JBrowse

Properties
Property NameValue
Product14 kda subunit splicing factor 3b
Orig transcript idgnl|cribi|Naga_100037g13.10734.mrna
Orig protein idgnl|cribi|Naga_100037g13.10734
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:1040845..1041886 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100037g13gene4872Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5046rna5046-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25645.1cds5034Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5046 ID=rna5046|Name=rna5046|organism=Nannochloropsis gaditana|type=mRNA|length=1218bp
ATGTCTTCCCTCAAGTCCTCCGTCCAAGATGCGCATTGCACTGTCAATAG
GCATAAACTACGTCCCAGCGAAGAAATGCTCGCGCGCGTCTGTGTCCTCG
TGGCCACATTTTTTGTGATGTTTTCTTCATCTGCATTGGCTTTTGTCGCC
CCAGCTGTCCGTATGACTGCGCGGAGCGCTGGAGCGCTACGTATGATGGC
TGCAGATGCTGGCGAGAAGGCTAATGTGGCGATTGTGACGGGTGCCTCCC
GCGGAATTGGCAAGGCTTGCGCTCTCGAACTTGCCCAACATGGAGTGAAA
GTAGTGGTAAACTACGCATCTTCCGCCGACTCTGCGCTCGCCGTGGTGGA
GGAGATTAAAGCCTTGGGCTCGGAGGCTGTGGCTATCAAGGCTGACATGT
CCAAGCCGGAGGAAGTGGAAGCCCTCTTCAAGGAGACAGCGGCAGCATTC
AAGGACCCTGTCAACATCCTTGTCAACAATGCCGGAATCACCAAAGATGG
CTTGGTCATGACGATGAAGCCGGAAGCCTGGCAAGCAGTCATCGACATCA
ACCTGTCGGGTGTCTTCTACGCCTCCAAGGCGGCCGCCAGCGTCATGCTG
CGGGCCCGACGGGGCCGCATTATCAATATGGCCTCGGTCGTGGGACAGAT
CGGCAACCCCGGACAGGCAAACTACGCGGCGGCCAAGGGCGGCGTACTCG
GTCTGACCAAGGCGAACGCCAAGGAGTTCGCTGCGCGGGGCGTGACTGTG
AACGCCGTTTGTCCGGGTTTCATCGAGAGCGACATGACGGAAAAGCTTGA
CTTGGACGGCATTAAGAAGGCGATCCCTCTAGGGAGACTGGGCAGGGCCT
CAGAGGTGGCGGGCATGGTCCGGTTTCTGGCTGTGGATCCGGCGGCTGCC
TACATTACTGGGCACTCGTTCGACGTCGATGGAGGCATTGCTATCGGCTT
TGGTGTCGATGACAGCGTAATTACGGTGAAGCGCGAGTATTGTTGCTTGC
AATGTATGTGTGATATGTGTCTTGCATGTGTGGGAGAGAGCGGTGACGCG
GAGGTGTACTCTCCCCAAAAGTCACTCAAAACTTCCGAACTTCAGAGTAT
TGAGACGGCGATGATCGTGGGTTTGCAATCAGTTGCTAAAACAGGCTCGT
ACACCTCGATTCAACGCCGTGACGCGATAGTAAATAGTGTAATGTGTGCG
GTGATCAAATTGTGTTAA
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protein sequence of rna5046

>rna5046-protein ID=rna5046-protein|Name=rna5046|organism=Nannochloropsis gaditana|type=polypeptide|length=124bp
MADAANFRQRNRLSPDVTRVLYVRNLPFKLSSEELYDIFGKYGPIRQIRV
GAANENRGKAFVIYEDIYDAKDALEHLNGFNVCGRYLVVLYFHPEKEQKR
MNLEKQRKEVEELRKMVDAGRKGT
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mRNA from alignment at CM002464.1:1040845..1041886+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5046 ID=rna5046|Name=rna5046|organism=Nannochloropsis gaditana|type=mRNA|length=1042bp|location=Sequence derived from alignment at CM002464.1:1040845..1041886+ (Nannochloropsis gaditana)
TTATGCCTAGCACTCAGAgtctcgtcttccttccctgtgGCCGGGATGGA
GTTTAGGGTGGAAGTCTCTGTCGTGAATCGGGGCCACGGTCATTGTATCC
ATGGCCGAAGCACGCATGAGGCATCCCCGTTATCACGTGGTtacctgcct
ccctttctatCCGACCTCCGGCTCCTCAACTGGTGCATGCCTCATGGCGC
GACAGACACCGGCTTGGTCACACATTAGCTACTCACATCGATGTCAAGCC
CTCTGCATTGTCGAGTCCCCTCACGCTATTTATTTTCCTACTTGCACTCT
TAGGTCTCGGTTCGCGGCAACTAGCCTTCATCATGGCGGATGCCGCCAAC
TTTCGGCAGCGGAACCGTCTCTCTCCAGACGTGACTCGCGTGCTGTATGT
TCGTAACCTTCCCTTCAAGCTTTCCTCCGAGGAACTTTACGACATTTTTG
GCAAATATGGACCGATAAGACAGGTAATGCCTGGGAGGCAATCGTAAAGA
GATTTGGAGTGCTTTAAGTCTCTCGTCTCATTCCCACCTTTTAATATGTC
TGGGGATGACATTACGCTGCGTCCCCCCCGGTAACATGATGGAGATGCTG
GATGCAACCTTgcaatttttcctttctttcaaAGAAACGGAAAGACAGCC
ATGGTGGACCGCTCTCATGTTCCTCACACCCCACGGACAGATCCGCGTTG
GAGCCGCCAACGAAAATCGAGGGAAGGCTTTCGTGATTTACGAAGATATC
TACGACGCCAAGGACGCACTTGAGCACTTGAATGGCTTCAATGTCTGCGG
TCGGTACTTGGTGGTCCTCTACTTCCACCCtgagaaggagcagaaacGCA
TGAACCTGGAGAAGCagcggaaggaggtggaggagctgaggAAAATGGTG
GAcgctgggaggaaggggacatGACGGGGGGGTGGCACGGGTTACATGGA
GGCAAATAGGCTGCTAACGAAATAAAGGAATGAAGAACCAAGACCTCGCA
CCGCTTGAGAGCGTGCCGGATTATTCTGACAGAATTCATTCC
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Coding sequence (CDS) from alignment at CM002464.1:1040845..1041886+

>rna5046 ID=rna5046|Name=rna5046|organism=Nannochloropsis gaditana|type=CDS|length=750bp|location=Sequence derived from alignment at CM002464.1:1040845..1041886+ (Nannochloropsis gaditana)
ATGGCGGATGCCGCCAACTTTCGGCAGCGGAACCGTCTCTCTCCAGACGT
GACTCGCGTGCTGTATGTTCGTAACCTTCCCTTCAAGCTTTCCTCCGAGG
AACTTTACGACATTTTTGGCAAATATGGACCGATAAGACAGATCCGCGTT
GGAGCCGCCAACGAAAATCGAGGGAAGGCTTTCGTGATTTACGAAGATAT
CTACGACGCCAAGGACGCACTTGAGCACTTGAATGGCTTCAATGTCTGCG
GTCGGTACTTGGTGGTCCTCTACTTCCACCCtgagaaggagcagaaacGC
ATGAACCTGGAGAAGCagcggaaggaggtggaggagctgaggAAAATGGT
GGAcgctgggaggaaggggacatGAATGGCGGATGCCGCCAACTTTCGGC
AGCGGAACCGTCTCTCTCCAGACGTGACTCGCGTGCTGTATGTTCGTAAC
CTTCCCTTCAAGCTTTCCTCCGAGGAACTTTACGACATTTTTGGCAAATA
TGGACCGATAAGACAGATCCGCGTTGGAGCCGCCAACGAAAATCGAGGGA
AGGCTTTCGTGATTTACGAAGATATCTACGACGCCAAGGACGCACTTGAG
CACTTGAATGGCTTCAATGTCTGCGGTCGGTACTTGGTGGTCCTCTACTT
CCACCCtgagaaggagcagaaacGCATGAACCTGGAGAAGCagcggaagg
aggtggaggagctgaggAAAATGGTGGAcgctgggaggaaggggacatGA
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Synonyms
Publications