EWM25645.1, cds5034 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM25645.1 vs. NCBI_GenBank
Match: gi|585107473|gb|EWM25645.1| (14 kda subunit splicing factor 3b [Nannochloropsis gaditana]) HSP 1 Score: 255.373 bits (651), Expect = 4.104e-86 Identity = 124/124 (100.00%), Postives = 124/124 (100.00%), Query Frame = 0
Query: 1 MADAANFRQRNRLSPDVTRVLYVRNLPFKLSSEELYDIFGKYGPIRQIRVGAANENRGKAFVIYEDIYDAKDALEHLNGFNVCGRYLVVLYFHPEKEQKRMNLEKQRKEVEELRKMVDAGRKGT 124
MADAANFRQRNRLSPDVTRVLYVRNLPFKLSSEELYDIFGKYGPIRQIRVGAANENRGKAFVIYEDIYDAKDALEHLNGFNVCGRYLVVLYFHPEKEQKRMNLEKQRKEVEELRKMVDAGRKGT
Sbjct: 1 MADAANFRQRNRLSPDVTRVLYVRNLPFKLSSEELYDIFGKYGPIRQIRVGAANENRGKAFVIYEDIYDAKDALEHLNGFNVCGRYLVVLYFHPEKEQKRMNLEKQRKEVEELRKMVDAGRKGT 124
BLAST of EWM25645.1 vs. NCBI_GenBank
Match: gi|325184774|emb|CCA19265.1| (premRNA branch site protein p14 putative [Albugo laibachii Nc14]) HSP 1 Score: 161.384 bits (407), Expect = 5.095e-49 Identity = 78/115 (67.83%), Postives = 93/115 (80.87%), Query Frame = 0
Query: 4 AANFRQRNRLSPDVTRVLYVRNLPFKLSSEELYDIFGKYGPIRQIRVGAANENRGKAFVIYEDIYDAKDALEHLNGFNVCGRYLVVLYFHPEKEQKRMN---LEKQRKEVEELRK 115
A R RL P+V RVLYVRNLPFK+SSEE+YDIFGKYG IRQIR+G NE RG AFVIYEDIYDAK+A++HL+GFNVCGRYL+VLY+ P K Q+R LEKQ++E+E LR+
Sbjct: 3 AVGRRGNARLPPEVNRVLYVRNLPFKISSEEMYDIFGKYGAIRQIRLGVNNETRGTAFVIYEDIYDAKNAVDHLSGFNVCGRYLIVLYYQPHKMQQRKGGGQLEKQKQELEGLRQ 117
BLAST of EWM25645.1 vs. NCBI_GenBank
Match: gi|635360128|emb|CCI50423.1| (unnamed protein product [Albugo candida]) HSP 1 Score: 161.384 bits (407), Expect = 5.366e-49 Identity = 78/117 (66.67%), Postives = 93/117 (79.49%), Query Frame = 0
Query: 4 AANFRQRNRLSPDVTRVLYVRNLPFKLSSEELYDIFGKYGPIRQIRVGAANENRGKAFVIYEDIYDAKDALEHLNGFNVCGRYLVVLYFHPEKEQKRMN-----LEKQRKEVEELRK 115
A R RL P+V RVLYVRNLPFK+SSEE+YDIFGKYG IRQIR+G NE RG AFVIYEDIYDAK+A++HL+GFNVCGRYL+VLY+ P K Q+R LEKQ++E+E LR+
Sbjct: 3 AVGRRGNARLPPEVNRVLYVRNLPFKISSEEMYDIFGKYGAIRQIRLGVNNETRGTAFVIYEDIYDAKNAVDHLSGFNVCGRYLIVLYYQPHKMQQRKGGAGGQLEKQKQEIEGLRQ 119
BLAST of EWM25645.1 vs. NCBI_GenBank
Match: gi|698797928|ref|XP_009831993.1| (pre-mRNA branch site p14-like protein [Aphanomyces astaci] >gi|574112921|gb|ETV78412.1| pre-mRNA branch site p14-like protein [Aphanomyces astaci]) HSP 1 Score: 160.614 bits (405), Expect = 1.349e-48 Identity = 71/114 (62.28%), Postives = 94/114 (82.46%), Query Frame = 0
Query: 1 MADAANFRQRNRLSPDVTRVLYVRNLPFKLSSEELYDIFGKYGPIRQIRVGAANENRGKAFVIYEDIYDAKDALEHLNGFNVCGRYLVVLYFHPEKEQKRMNLEKQRKEVEELR 114
M+++ R +RL P+V RVLYVRNLPFK+SSEE+YDIFGKYG IRQIR+G ANE RG AFV+YEDIYDAK+A++HL+GFNVCGRYLVVLY+ + K M++ +++E+ +L+
Sbjct: 4 MSNSFGRRSNSRLPPEVNRVLYVRNLPFKISSEEMYDIFGKYGAIRQIRLGVANETRGTAFVVYEDIYDAKNAVDHLSGFNVCGRYLVVLYYQASRVHKSMDVNAKQQELSQLK 117
BLAST of EWM25645.1 vs. NCBI_GenBank
Match: gi|673025232|ref|XP_008866577.1| (pre-mRNA branch site p14-like protein [Aphanomyces invadans] >gi|574478143|gb|ETW05139.1| pre-mRNA branch site p14-like protein [Aphanomyces invadans]) HSP 1 Score: 159.458 bits (402), Expect = 2.886e-48 Identity = 70/114 (61.40%), Postives = 94/114 (82.46%), Query Frame = 0
Query: 1 MADAANFRQRNRLSPDVTRVLYVRNLPFKLSSEELYDIFGKYGPIRQIRVGAANENRGKAFVIYEDIYDAKDALEHLNGFNVCGRYLVVLYFHPEKEQKRMNLEKQRKEVEELR 114
M+++ R +RL P+V RVLYVRNLPFK+SSEE+YDIFGKYG IRQIR+G +N+ RG AFV+YEDIYDAK+A++HL+GFNVCGRYLVVLY+ K K M++ +++E+ +L+
Sbjct: 1 MSNSFGRRSNSRLPPEVNRVLYVRNLPFKISSEEMYDIFGKYGAIRQIRLGVSNDTRGTAFVVYEDIYDAKNAVDHLSGFNVCGRYLVVLYYQASKMHKNMDVNAKQQEISQLK 114
BLAST of EWM25645.1 vs. NCBI_GenBank
Match: gi|551616938|ref|XP_005789312.1| (Hypothetical protein EMIHUDRAFT_63012 [Emiliania huxleyi CCMP1516] >gi|485642816|gb|EOD36883.1| Hypothetical protein EMIHUDRAFT_63012 [Emiliania huxleyi CCMP1516]) HSP 1 Score: 158.303 bits (399), Expect = 1.206e-47 Identity = 72/118 (61.02%), Postives = 96/118 (81.36%), Query Frame = 0
Query: 8 RQRNRLSPDVTRVLYVRNLPFKLSSEELYDIFGKYGPIRQIRVGAANENRGKAFVIYEDIYDAKDALEHLNGFNVCGRYLVVLYFHPEKEQKRMNLEKQRKEVEELRKM--VDAGRKG 123
R RL P+V R LYVRNLPFK+++EE+YDIFGK+G IRQIR+G A++ RG AFV+YEDIYDAK+A++HL+GFNVCGRYLVVLY+ K QKR++ E+++KE+ E+R +D G +G
Sbjct: 7 RASMRLPPEVNRALYVRNLPFKITAEEMYDIFGKFGAIRQIRLGNASDTRGTAFVVYEDIYDAKNAVDHLSGFNVCGRYLVVLYYQQTKMQKRLDTEREQKELAEMRAKLGIDTGDEG 124
BLAST of EWM25645.1 vs. NCBI_GenBank
Match: gi|922863463|gb|KOO30897.1| (pre-mRNA branch site p14-like protein [Chrysochromulina sp. CCMP291]) HSP 1 Score: 156.377 bits (394), Expect = 5.978e-47 Identity = 71/111 (63.96%), Postives = 91/111 (81.98%), Query Frame = 0
Query: 4 AANFRQRNRLSPDVTRVLYVRNLPFKLSSEELYDIFGKYGPIRQIRVGAANENRGKAFVIYEDIYDAKDALEHLNGFNVCGRYLVVLYFHPEKEQKRMNLEKQRKEVEELR 114
AA RQ+ RL P+V R LYVRNLPFK+++EE+YDIFGK+G IRQIR+G A + RG AFV+YEDI+DAK A++HL+GFNVCGRYLVVLY+ K QKR + E++ KE+ E+R
Sbjct: 2 AARQRQQLRLPPEVNRALYVRNLPFKITAEEMYDIFGKFGAIRQIRLGNAADTRGTAFVVYEDIFDAKTAVDHLSGFNVCGRYLVVLYYQQTKMQKRQDTEREMKELAEMR 112
BLAST of EWM25645.1 vs. NCBI_GenBank
Match: gi|695399858|ref|XP_009522376.1| (hypothetical protein PHYSODRAFT_312714 [Phytophthora sojae] >gi|348679843|gb|EGZ19659.1| hypothetical protein PHYSODRAFT_312714 [Phytophthora sojae]) HSP 1 Score: 155.992 bits (393), Expect = 9.761e-47 Identity = 72/110 (65.45%), Postives = 93/110 (84.55%), Query Frame = 0
Query: 8 RQRNRLSPDVTRVLYVRNLPFKLSSEELYDIFGKYGPIRQIRVGAANENRGKAFVIYEDIYDAKDALEHLNGFNVCGRYLVVLYFHPEKEQKR---MNLEKQRKEVEELR 114
R RL P+V RVLYVRNLPFK+SSEELYDIFGKYG IRQIR+G N+ RG AFV+YEDIYDAK+A++HL+GFNVCGRYL+VLY+ K Q+R ++L+KQ++E+++L+
Sbjct: 9 RGNARLPPEVNRVLYVRNLPFKISSEELYDIFGKYGAIRQIRLGVNNDTRGTAFVVYEDIYDAKNAVDHLSGFNVCGRYLIVLYYQANKMQQRKAAVDLDKQKQELQDLK 118
BLAST of EWM25645.1 vs. NCBI_GenBank
Match: gi|595439217|gb|EXX52679.1| (Mrd1p [Rhizophagus irregularis DAOM 197198w]) HSP 1 Score: 155.606 bits (392), Expect = 1.077e-46 Identity = 73/115 (63.48%), Postives = 93/115 (80.87%), Query Frame = 0
Query: 1 MADAANFRQRN-RLSPDVTRVLYVRNLPFKLSSEELYDIFGKYGPIRQIRVGAANENRGKAFVIYEDIYDAKDALEHLNGFNVCGRYLVVLYFHPEKEQKRMNLEKQRKEVEELR 114
MA AA+ + RN RL P+V RVL+VRNLPF ++SEE+YDIFGKYG IRQIR+G + RG AFV+YEDI+DAK A +HLNGFNV GRYL+VLY+ P K K+MNL+K+ +E+ EL+
Sbjct: 1 MAMAASAKNRNARLPPEVNRVLFVRNLPFNITSEEMYDIFGKYGAIRQIRLGCEKDTRGTAFVVYEDIFDAKAACDHLNGFNVMGRYLIVLYYQPNKVTKKMNLQKKEEELRELK 115
BLAST of EWM25645.1 vs. NCBI_GenBank
Match: gi|953494316|emb|CEG43910.1| (pre-mrna branch site p14-like protein [Plasmopara halstedii]) HSP 1 Score: 154.836 bits (390), Expect = 2.353e-46 Identity = 73/115 (63.48%), Postives = 97/115 (84.35%), Query Frame = 0
Query: 4 AANFRQRN-RLSPDVTRVLYVRNLPFKLSSEELYDIFGKYGPIRQIRVGAANENRGKAFVIYEDIYDAKDALEHLNGFNVCGRYLVVLYFHPEKEQKR---MNLEKQRKEVEELR 114
+A+ R+ N RL P+V RVLYVRNLPFK+SSEELYDIFGKYG IRQIR+G N+ RG AFV+YEDIYDAK+A++HL+GFNVCGRYL+VLY+ K Q+R +++ KQ++E+++L+
Sbjct: 2 SAHVRRGNARLPPEVNRVLYVRNLPFKISSEELYDIFGKYGAIRQIRLGVNNDTRGTAFVVYEDIYDAKNAVDHLSGFNVCGRYLIVLYYQANKMQQRKTAVDINKQKQELQDLK 116 The following BLAST results are available for this feature:
BLAST of EWM25645.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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