EWM25645.1, cds5034 (CDS) Nannochloropsis gaditana

Overview
NameEWM25645.1
Unique Namecds5034
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002464.1:1041177..1041317 +
Alignment locationCM002464.1:1041535..1041768 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM25645.1
Product14 kda subunit splicing factor 3b
Orig transcript idgnl|cribi|Naga_100037g13.10734.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:1041177..1041317 +
CM002464.1supercontigCM002464.1:1041535..1041768 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0000166nucleotide binding
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR012677Nucleotide-bd_a/b_plait
IPR000504RRM_dom
Homology
BLAST of EWM25645.1 vs. NCBI_GenBank
Match: gi|585107473|gb|EWM25645.1| (14 kda subunit splicing factor 3b [Nannochloropsis gaditana])

HSP 1 Score: 255.373 bits (651), Expect = 4.104e-86
Identity = 124/124 (100.00%), Postives = 124/124 (100.00%), Query Frame = 0
Query:    1 MADAANFRQRNRLSPDVTRVLYVRNLPFKLSSEELYDIFGKYGPIRQIRVGAANENRGKAFVIYEDIYDAKDALEHLNGFNVCGRYLVVLYFHPEKEQKRMNLEKQRKEVEELRKMVDAGRKGT 124
            MADAANFRQRNRLSPDVTRVLYVRNLPFKLSSEELYDIFGKYGPIRQIRVGAANENRGKAFVIYEDIYDAKDALEHLNGFNVCGRYLVVLYFHPEKEQKRMNLEKQRKEVEELRKMVDAGRKGT
Sbjct:    1 MADAANFRQRNRLSPDVTRVLYVRNLPFKLSSEELYDIFGKYGPIRQIRVGAANENRGKAFVIYEDIYDAKDALEHLNGFNVCGRYLVVLYFHPEKEQKRMNLEKQRKEVEELRKMVDAGRKGT 124          
BLAST of EWM25645.1 vs. NCBI_GenBank
Match: gi|325184774|emb|CCA19265.1| (premRNA branch site protein p14 putative [Albugo laibachii Nc14])

HSP 1 Score: 161.384 bits (407), Expect = 5.095e-49
Identity = 78/115 (67.83%), Postives = 93/115 (80.87%), Query Frame = 0
Query:    4 AANFRQRNRLSPDVTRVLYVRNLPFKLSSEELYDIFGKYGPIRQIRVGAANENRGKAFVIYEDIYDAKDALEHLNGFNVCGRYLVVLYFHPEKEQKRMN---LEKQRKEVEELRK 115
            A   R   RL P+V RVLYVRNLPFK+SSEE+YDIFGKYG IRQIR+G  NE RG AFVIYEDIYDAK+A++HL+GFNVCGRYL+VLY+ P K Q+R     LEKQ++E+E LR+
Sbjct:    3 AVGRRGNARLPPEVNRVLYVRNLPFKISSEEMYDIFGKYGAIRQIRLGVNNETRGTAFVIYEDIYDAKNAVDHLSGFNVCGRYLIVLYYQPHKMQQRKGGGQLEKQKQELEGLRQ 117          
BLAST of EWM25645.1 vs. NCBI_GenBank
Match: gi|635360128|emb|CCI50423.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 161.384 bits (407), Expect = 5.366e-49
Identity = 78/117 (66.67%), Postives = 93/117 (79.49%), Query Frame = 0
Query:    4 AANFRQRNRLSPDVTRVLYVRNLPFKLSSEELYDIFGKYGPIRQIRVGAANENRGKAFVIYEDIYDAKDALEHLNGFNVCGRYLVVLYFHPEKEQKRMN-----LEKQRKEVEELRK 115
            A   R   RL P+V RVLYVRNLPFK+SSEE+YDIFGKYG IRQIR+G  NE RG AFVIYEDIYDAK+A++HL+GFNVCGRYL+VLY+ P K Q+R       LEKQ++E+E LR+
Sbjct:    3 AVGRRGNARLPPEVNRVLYVRNLPFKISSEEMYDIFGKYGAIRQIRLGVNNETRGTAFVIYEDIYDAKNAVDHLSGFNVCGRYLIVLYYQPHKMQQRKGGAGGQLEKQKQEIEGLRQ 119          
BLAST of EWM25645.1 vs. NCBI_GenBank
Match: gi|698797928|ref|XP_009831993.1| (pre-mRNA branch site p14-like protein [Aphanomyces astaci] >gi|574112921|gb|ETV78412.1| pre-mRNA branch site p14-like protein [Aphanomyces astaci])

HSP 1 Score: 160.614 bits (405), Expect = 1.349e-48
Identity = 71/114 (62.28%), Postives = 94/114 (82.46%), Query Frame = 0
Query:    1 MADAANFRQRNRLSPDVTRVLYVRNLPFKLSSEELYDIFGKYGPIRQIRVGAANENRGKAFVIYEDIYDAKDALEHLNGFNVCGRYLVVLYFHPEKEQKRMNLEKQRKEVEELR 114
            M+++   R  +RL P+V RVLYVRNLPFK+SSEE+YDIFGKYG IRQIR+G ANE RG AFV+YEDIYDAK+A++HL+GFNVCGRYLVVLY+   +  K M++  +++E+ +L+
Sbjct:    4 MSNSFGRRSNSRLPPEVNRVLYVRNLPFKISSEEMYDIFGKYGAIRQIRLGVANETRGTAFVVYEDIYDAKNAVDHLSGFNVCGRYLVVLYYQASRVHKSMDVNAKQQELSQLK 117          
BLAST of EWM25645.1 vs. NCBI_GenBank
Match: gi|673025232|ref|XP_008866577.1| (pre-mRNA branch site p14-like protein [Aphanomyces invadans] >gi|574478143|gb|ETW05139.1| pre-mRNA branch site p14-like protein [Aphanomyces invadans])

HSP 1 Score: 159.458 bits (402), Expect = 2.886e-48
Identity = 70/114 (61.40%), Postives = 94/114 (82.46%), Query Frame = 0
Query:    1 MADAANFRQRNRLSPDVTRVLYVRNLPFKLSSEELYDIFGKYGPIRQIRVGAANENRGKAFVIYEDIYDAKDALEHLNGFNVCGRYLVVLYFHPEKEQKRMNLEKQRKEVEELR 114
            M+++   R  +RL P+V RVLYVRNLPFK+SSEE+YDIFGKYG IRQIR+G +N+ RG AFV+YEDIYDAK+A++HL+GFNVCGRYLVVLY+   K  K M++  +++E+ +L+
Sbjct:    1 MSNSFGRRSNSRLPPEVNRVLYVRNLPFKISSEEMYDIFGKYGAIRQIRLGVSNDTRGTAFVVYEDIYDAKNAVDHLSGFNVCGRYLVVLYYQASKMHKNMDVNAKQQEISQLK 114          
BLAST of EWM25645.1 vs. NCBI_GenBank
Match: gi|551616938|ref|XP_005789312.1| (Hypothetical protein EMIHUDRAFT_63012 [Emiliania huxleyi CCMP1516] >gi|485642816|gb|EOD36883.1| Hypothetical protein EMIHUDRAFT_63012 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 158.303 bits (399), Expect = 1.206e-47
Identity = 72/118 (61.02%), Postives = 96/118 (81.36%), Query Frame = 0
Query:    8 RQRNRLSPDVTRVLYVRNLPFKLSSEELYDIFGKYGPIRQIRVGAANENRGKAFVIYEDIYDAKDALEHLNGFNVCGRYLVVLYFHPEKEQKRMNLEKQRKEVEELRKM--VDAGRKG 123
            R   RL P+V R LYVRNLPFK+++EE+YDIFGK+G IRQIR+G A++ RG AFV+YEDIYDAK+A++HL+GFNVCGRYLVVLY+   K QKR++ E+++KE+ E+R    +D G +G
Sbjct:    7 RASMRLPPEVNRALYVRNLPFKITAEEMYDIFGKFGAIRQIRLGNASDTRGTAFVVYEDIYDAKNAVDHLSGFNVCGRYLVVLYYQQTKMQKRLDTEREQKELAEMRAKLGIDTGDEG 124          
BLAST of EWM25645.1 vs. NCBI_GenBank
Match: gi|922863463|gb|KOO30897.1| (pre-mRNA branch site p14-like protein [Chrysochromulina sp. CCMP291])

HSP 1 Score: 156.377 bits (394), Expect = 5.978e-47
Identity = 71/111 (63.96%), Postives = 91/111 (81.98%), Query Frame = 0
Query:    4 AANFRQRNRLSPDVTRVLYVRNLPFKLSSEELYDIFGKYGPIRQIRVGAANENRGKAFVIYEDIYDAKDALEHLNGFNVCGRYLVVLYFHPEKEQKRMNLEKQRKEVEELR 114
            AA  RQ+ RL P+V R LYVRNLPFK+++EE+YDIFGK+G IRQIR+G A + RG AFV+YEDI+DAK A++HL+GFNVCGRYLVVLY+   K QKR + E++ KE+ E+R
Sbjct:    2 AARQRQQLRLPPEVNRALYVRNLPFKITAEEMYDIFGKFGAIRQIRLGNAADTRGTAFVVYEDIFDAKTAVDHLSGFNVCGRYLVVLYYQQTKMQKRQDTEREMKELAEMR 112          
BLAST of EWM25645.1 vs. NCBI_GenBank
Match: gi|695399858|ref|XP_009522376.1| (hypothetical protein PHYSODRAFT_312714 [Phytophthora sojae] >gi|348679843|gb|EGZ19659.1| hypothetical protein PHYSODRAFT_312714 [Phytophthora sojae])

HSP 1 Score: 155.992 bits (393), Expect = 9.761e-47
Identity = 72/110 (65.45%), Postives = 93/110 (84.55%), Query Frame = 0
Query:    8 RQRNRLSPDVTRVLYVRNLPFKLSSEELYDIFGKYGPIRQIRVGAANENRGKAFVIYEDIYDAKDALEHLNGFNVCGRYLVVLYFHPEKEQKR---MNLEKQRKEVEELR 114
            R   RL P+V RVLYVRNLPFK+SSEELYDIFGKYG IRQIR+G  N+ RG AFV+YEDIYDAK+A++HL+GFNVCGRYL+VLY+   K Q+R   ++L+KQ++E+++L+
Sbjct:    9 RGNARLPPEVNRVLYVRNLPFKISSEELYDIFGKYGAIRQIRLGVNNDTRGTAFVVYEDIYDAKNAVDHLSGFNVCGRYLIVLYYQANKMQQRKAAVDLDKQKQELQDLK 118          
BLAST of EWM25645.1 vs. NCBI_GenBank
Match: gi|595439217|gb|EXX52679.1| (Mrd1p [Rhizophagus irregularis DAOM 197198w])

HSP 1 Score: 155.606 bits (392), Expect = 1.077e-46
Identity = 73/115 (63.48%), Postives = 93/115 (80.87%), Query Frame = 0
Query:    1 MADAANFRQRN-RLSPDVTRVLYVRNLPFKLSSEELYDIFGKYGPIRQIRVGAANENRGKAFVIYEDIYDAKDALEHLNGFNVCGRYLVVLYFHPEKEQKRMNLEKQRKEVEELR 114
            MA AA+ + RN RL P+V RVL+VRNLPF ++SEE+YDIFGKYG IRQIR+G   + RG AFV+YEDI+DAK A +HLNGFNV GRYL+VLY+ P K  K+MNL+K+ +E+ EL+
Sbjct:    1 MAMAASAKNRNARLPPEVNRVLFVRNLPFNITSEEMYDIFGKYGAIRQIRLGCEKDTRGTAFVVYEDIFDAKAACDHLNGFNVMGRYLIVLYYQPNKVTKKMNLQKKEEELRELK 115          
BLAST of EWM25645.1 vs. NCBI_GenBank
Match: gi|953494316|emb|CEG43910.1| (pre-mrna branch site p14-like protein [Plasmopara halstedii])

HSP 1 Score: 154.836 bits (390), Expect = 2.353e-46
Identity = 73/115 (63.48%), Postives = 97/115 (84.35%), Query Frame = 0
Query:    4 AANFRQRN-RLSPDVTRVLYVRNLPFKLSSEELYDIFGKYGPIRQIRVGAANENRGKAFVIYEDIYDAKDALEHLNGFNVCGRYLVVLYFHPEKEQKR---MNLEKQRKEVEELR 114
            +A+ R+ N RL P+V RVLYVRNLPFK+SSEELYDIFGKYG IRQIR+G  N+ RG AFV+YEDIYDAK+A++HL+GFNVCGRYL+VLY+   K Q+R   +++ KQ++E+++L+
Sbjct:    2 SAHVRRGNARLPPEVNRVLYVRNLPFKISSEELYDIFGKYGAIRQIRLGVNNDTRGTAFVVYEDIYDAKNAVDHLSGFNVCGRYLIVLYYQANKMQQRKTAVDINKQKQELQDLK 116          
The following BLAST results are available for this feature:
BLAST of EWM25645.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585107473|gb|EWM25645.1|4.104e-86100.0014 kda subunit splicing factor 3b [Nannochloropsis... [more]
gi|325184774|emb|CCA19265.1|5.095e-4967.83premRNA branch site protein p14 putative [Albugo l... [more]
gi|635360128|emb|CCI50423.1|5.366e-4966.67unnamed protein product [Albugo candida][more]
gi|698797928|ref|XP_009831993.1|1.349e-4862.28pre-mRNA branch site p14-like protein [Aphanomyces... [more]
gi|673025232|ref|XP_008866577.1|2.886e-4861.40pre-mRNA branch site p14-like protein [Aphanomyces... [more]
gi|551616938|ref|XP_005789312.1|1.206e-4761.02Hypothetical protein EMIHUDRAFT_63012 [Emiliania h... [more]
gi|922863463|gb|KOO30897.1|5.978e-4763.96pre-mRNA branch site p14-like protein [Chrysochrom... [more]
gi|695399858|ref|XP_009522376.1|9.761e-4765.45hypothetical protein PHYSODRAFT_312714 [Phytophtho... [more]
gi|595439217|gb|EXX52679.1|1.077e-4663.48Mrd1p [Rhizophagus irregularis DAOM 197198w][more]
gi|953494316|emb|CEG43910.1|2.353e-4663.48pre-mrna branch site p14-like protein [Plasmopara ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5046rna5046Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications