EWM25655.1, cds5017 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM25655.1 vs. NCBI_GenBank
Match: gi|585107484|gb|EWM25655.1| (histone deacetylase sin3 component [Nannochloropsis gaditana]) HSP 1 Score: 326.635 bits (836), Expect = 3.672e-113 Identity = 162/162 (100.00%), Postives = 162/162 (100.00%), Query Frame = 0
Query: 1 MSSLSGAGGRPLSVGEEGRMGGGEGGGGEGKKSMAPGGVAGGSVGAGGAGGPLVEFKQAKDYVTTIKKRFASEPHQATYKAFLKILHHYQEEQRNIMDVLEQVSSLFADHPDLLKEFTYFLPDAVQEQAKERLNRAAEESEMRKAARQQQQAARMGGAWGKS 162
MSSLSGAGGRPLSVGEEGRMGGGEGGGGEGKKSMAPGGVAGGSVGAGGAGGPLVEFKQAKDYVTTIKKRFASEPHQATYKAFLKILHHYQEEQRNIMDVLEQVSSLFADHPDLLKEFTYFLPDAVQEQAKERLNRAAEESEMRKAARQQQQAARMGGAWGKS
Sbjct: 1 MSSLSGAGGRPLSVGEEGRMGGGEGGGGEGKKSMAPGGVAGGSVGAGGAGGPLVEFKQAKDYVTTIKKRFASEPHQATYKAFLKILHHYQEEQRNIMDVLEQVSSLFADHPDLLKEFTYFLPDAVQEQAKERLNRAAEESEMRKAARQQQQAARMGGAWGKS 162
BLAST of EWM25655.1 vs. NCBI_GenBank
Match: gi|1214707914|gb|OWZ19254.1| (Paired amphipathic helix protein Sin3 [Phytophthora megakarya]) HSP 1 Score: 149.443 bits (376), Expect = 9.637e-39 Identity = 82/149 (55.03%), Postives = 98/149 (65.77%), Query Frame = 0
Query: 10 RPLSVGEEGRMGGGEGGGGEGKKSMAPGGVAGGSVGAGGAGGPLVEFKQAKDYVTTIKKRFASEPHQATYKAFLKILHHYQEEQRNIMDVLEQVSSLFADHPDLLKEFTYFLPDAVQEQAKERLNRAAEESEMRKAARQQQQAARMGGA 158
+P + GG G+ KK +GG+V A + P VEF A YVTTIK+RFA EP TYK FL ILH YQ+EQR+I VL+QVS LF DHPDLL+EFT+FLPDAVQEQAKERLNRAAE+++ RK Q Q AR G+
Sbjct: 360 KPTPSSRQQLPGGQMKNSGKPKKQQPAPTPSGGNVAARSSTNP-VEFDHAIHYVTTIKQRFADEPE--TYKEFLAILHTYQKEQRSIRQVLDQVSHLFRDHPDLLREFTFFLPDAVQEQAKERLNRAAEKAQQRK--DQMAQKARKYGS 503
BLAST of EWM25655.1 vs. NCBI_GenBank
Match: gi|970659897|gb|KUF97496.1| (hypothetical protein AM588_10009571 [Phytophthora nicotianae]) HSP 1 Score: 146.747 bits (369), Expect = 1.061e-37 Identity = 80/136 (58.82%), Postives = 96/136 (70.59%), Query Frame = 0
Query: 25 GGGGEGKKSMAPGGVAGGSVGAGGAGGPLVEFKQAKDYVTTIKKRFASEPHQATYKAFLKILHHYQEEQRNIMDVLEQVSSLFADHPDLLKEFTYFLPDAVQEQAKERLNRAAEESEMRKAARQQQQAARMGGAWG 160
GG + ++ AP +GG+ A + P VEF A YVTTIK+RFA EP TYK FL ILH YQ+EQR+I VL+QVS LF DHPDLL+EFT+FLPDAVQEQAKERLNRAAE+++ RK Q Q AR G+ G
Sbjct: 54 GGKPKKQQQQAPAP-SGGNAAARSSTNP-VEFDHAIHYVTTIKQRFADEPE--TYKEFLAILHTYQKEQRSIRQVLDQVSHLFRDHPDLLREFTFFLPDAVQEQAKERLNRAAEKAQQRK--DQMAQKARKYGSQG 183
BLAST of EWM25655.1 vs. NCBI_GenBank
Match: gi|970664446|gb|KUG01348.1| (Paired amphipathic helix protein Sin3a [Phytophthora nicotianae]) HSP 1 Score: 146.362 bits (368), Expect = 1.534e-37 Identity = 80/136 (58.82%), Postives = 96/136 (70.59%), Query Frame = 0
Query: 25 GGGGEGKKSMAPGGVAGGSVGAGGAGGPLVEFKQAKDYVTTIKKRFASEPHQATYKAFLKILHHYQEEQRNIMDVLEQVSSLFADHPDLLKEFTYFLPDAVQEQAKERLNRAAEESEMRKAARQQQQAARMGGAWG 160
GG + ++ AP +GG+ A + P VEF A YVTTIK+RFA EP TYK FL ILH YQ+EQR+I VL+QVS LF DHPDLL+EFT+FLPDAVQEQAKERLNRAAE+++ RK Q Q AR G+ G
Sbjct: 346 GGKPKKQQQQAPAP-SGGNAAARSSTNP-VEFDHAIHYVTTIKQRFADEPE--TYKEFLAILHTYQKEQRSIRQVLDQVSHLFRDHPDLLREFTFFLPDAVQEQAKERLNRAAEKAQQRK--DQMAQKARKYGSQG 475
BLAST of EWM25655.1 vs. NCBI_GenBank
Match: gi|568049855|gb|ETM46821.1| (hypothetical protein L914_08380 [Phytophthora parasitica]) HSP 1 Score: 145.976 bits (367), Expect = 1.597e-37 Identity = 80/136 (58.82%), Postives = 96/136 (70.59%), Query Frame = 0
Query: 25 GGGGEGKKSMAPGGVAGGSVGAGGAGGPLVEFKQAKDYVTTIKKRFASEPHQATYKAFLKILHHYQEEQRNIMDVLEQVSSLFADHPDLLKEFTYFLPDAVQEQAKERLNRAAEESEMRKAARQQQQAARMGGAWG 160
GG + ++ AP +GG+ A + P VEF A YVTTIK+RFA EP TYK FL ILH YQ+EQR+I VL+QVS LF DHPDLL+EFT+FLPDAVQEQAKERLNRAAE+++ RK Q Q AR G+ G
Sbjct: 392 GGKPKKQQQQAPAP-SGGNAAARSSTNP-VEFDHAIHYVTTIKQRFADEPE--TYKEFLAILHTYQKEQRSIRQVLDQVSHLFRDHPDLLREFTFFLPDAVQEQAKERLNRAAEKAQQRK--DQMAQKARKYGSQG 521
BLAST of EWM25655.1 vs. NCBI_GenBank
Match: gi|570951600|gb|ETP16857.1| (hypothetical protein F441_08645 [Phytophthora parasitica CJ01A1]) HSP 1 Score: 145.976 bits (367), Expect = 1.644e-37 Identity = 80/136 (58.82%), Postives = 96/136 (70.59%), Query Frame = 0
Query: 25 GGGGEGKKSMAPGGVAGGSVGAGGAGGPLVEFKQAKDYVTTIKKRFASEPHQATYKAFLKILHHYQEEQRNIMDVLEQVSSLFADHPDLLKEFTYFLPDAVQEQAKERLNRAAEESEMRKAARQQQQAARMGGAWG 160
GG + ++ AP +GG+ A + P VEF A YVTTIK+RFA EP TYK FL ILH YQ+EQR+I VL+QVS LF DHPDLL+EFT+FLPDAVQEQAKERLNRAAE+++ RK Q Q AR G+ G
Sbjct: 392 GGKPKKQQQQAPAP-SGGNAAARSSTNP-VEFDHAIHYVTTIKQRFADEPE--TYKEFLAILHTYQKEQRSIRQVLDQVSHLFRDHPDLLREFTFFLPDAVQEQAKERLNRAAEKAQQRK--DQMAQKARKYGSQG 521
BLAST of EWM25655.1 vs. NCBI_GenBank
Match: gi|675193259|ref|XP_008905514.1| (hypothetical protein PPTG_11020 [Phytophthora parasitica INRA-310] >gi|568094171|gb|ETN08953.1| hypothetical protein PPTG_11020 [Phytophthora parasitica INRA-310]) HSP 1 Score: 145.976 bits (367), Expect = 1.693e-37 Identity = 80/136 (58.82%), Postives = 96/136 (70.59%), Query Frame = 0
Query: 25 GGGGEGKKSMAPGGVAGGSVGAGGAGGPLVEFKQAKDYVTTIKKRFASEPHQATYKAFLKILHHYQEEQRNIMDVLEQVSSLFADHPDLLKEFTYFLPDAVQEQAKERLNRAAEESEMRKAARQQQQAARMGGAWG 160
GG + ++ AP +GG+ A + P VEF A YVTTIK+RFA EP TYK FL ILH YQ+EQR+I VL+QVS LF DHPDLL+EFT+FLPDAVQEQAKERLNRAAE+++ RK Q Q AR G+ G
Sbjct: 392 GGKPKKQQQQAPAP-SGGNAAARSSTNP-VEFDHAIHYVTTIKQRFADEPE--TYKEFLAILHTYQKEQRSIRQVLDQVSHLFRDHPDLLREFTFFLPDAVQEQAKERLNRAAEKAQQRK--DQMAQKARKYGSQG 521
BLAST of EWM25655.1 vs. NCBI_GenBank
Match: gi|566024155|gb|ETI47066.1| (hypothetical protein F443_08668 [Phytophthora parasitica P1569]) HSP 1 Score: 145.976 bits (367), Expect = 1.693e-37 Identity = 80/136 (58.82%), Postives = 96/136 (70.59%), Query Frame = 0
Query: 25 GGGGEGKKSMAPGGVAGGSVGAGGAGGPLVEFKQAKDYVTTIKKRFASEPHQATYKAFLKILHHYQEEQRNIMDVLEQVSSLFADHPDLLKEFTYFLPDAVQEQAKERLNRAAEESEMRKAARQQQQAARMGGAWG 160
GG + ++ AP +GG+ A + P VEF A YVTTIK+RFA EP TYK FL ILH YQ+EQR+I VL+QVS LF DHPDLL+EFT+FLPDAVQEQAKERLNRAAE+++ RK Q Q AR G+ G
Sbjct: 392 GGKPKKQQQQAPAP-SGGNAAARSSTNP-VEFDHAIHYVTTIKQRFADEPE--TYKEFLAILHTYQKEQRSIRQVLDQVSHLFRDHPDLLREFTFFLPDAVQEQAKERLNRAAEKAQQRK--DQMAQKARKYGSQG 521
BLAST of EWM25655.1 vs. NCBI_GenBank
Match: gi|570985696|gb|ETP44914.1| (hypothetical protein F442_08600 [Phytophthora parasitica P10297]) HSP 1 Score: 145.976 bits (367), Expect = 1.709e-37 Identity = 80/136 (58.82%), Postives = 96/136 (70.59%), Query Frame = 0
Query: 25 GGGGEGKKSMAPGGVAGGSVGAGGAGGPLVEFKQAKDYVTTIKKRFASEPHQATYKAFLKILHHYQEEQRNIMDVLEQVSSLFADHPDLLKEFTYFLPDAVQEQAKERLNRAAEESEMRKAARQQQQAARMGGAWG 160
GG + ++ AP +GG+ A + P VEF A YVTTIK+RFA EP TYK FL ILH YQ+EQR+I VL+QVS LF DHPDLL+EFT+FLPDAVQEQAKERLNRAAE+++ RK Q Q AR G+ G
Sbjct: 392 GGKPKKQQQQAPAP-SGGNAAARSSTNP-VEFDHAIHYVTTIKQRFADEPE--TYKEFLAILHTYQKEQRSIRQVLDQVSHLFRDHPDLLREFTFFLPDAVQEQAKERLNRAAEKAQQRK--DQMAQKARKYGSQG 521
BLAST of EWM25655.1 vs. NCBI_GenBank
Match: gi|567961452|gb|ETK86994.1| (hypothetical protein L915_08502 [Phytophthora parasitica]) HSP 1 Score: 145.976 bits (367), Expect = 1.709e-37 Identity = 80/136 (58.82%), Postives = 96/136 (70.59%), Query Frame = 0
Query: 25 GGGGEGKKSMAPGGVAGGSVGAGGAGGPLVEFKQAKDYVTTIKKRFASEPHQATYKAFLKILHHYQEEQRNIMDVLEQVSSLFADHPDLLKEFTYFLPDAVQEQAKERLNRAAEESEMRKAARQQQQAARMGGAWG 160
GG + ++ AP +GG+ A + P VEF A YVTTIK+RFA EP TYK FL ILH YQ+EQR+I VL+QVS LF DHPDLL+EFT+FLPDAVQEQAKERLNRAAE+++ RK Q Q AR G+ G
Sbjct: 392 GGKPKKQQQQAPAP-SGGNAAARSSTNP-VEFDHAIHYVTTIKQRFADEPE--TYKEFLAILHTYQKEQRSIRQVLDQVSHLFRDHPDLLREFTFFLPDAVQEQAKERLNRAAEKAQQRK--DQMAQKARKYGSQG 521 The following BLAST results are available for this feature:
BLAST of EWM25655.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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