rna5029, rna5029 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna5029
Unique Name	rna5029
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	258
Alignment location	CM002464.1:961459..962818 -

Link to JBrowse

Properties


Property Name	Value
Product	histone deacetylase sin3 component
Orig transcript id	gnl\|cribi\|Naga_100500g4.3107.mrna
Orig protein id	gnl\|cribi\|Naga_100500g4.3107
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002464.1	supercontig	CM002464.1:961459..962818 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100500g4	gene4857	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna5029	rna5029-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25655.1	cds5017	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002464.1:961459..962818-
coding sequence from alignment at CM002464.1:961459..962818-

mRNA sequence

>rna5029 ID=rna5029|Name=rna5029|organism=Nannochloropsis gaditana|type=mRNA|length=258bp
ATGTTTACCGTCCTGGAGCTCCTACGGAAGAACCCTGCGGGGGCGATCCC
AGTCATCCTCCGCCGCCTCAAGCAGAAAGATTTGGAATGGCGAAAAGCTC
GCCAGGACCTGAACAAAGGCTGGAAAGACGTGCTGGAGAAGAACTACCAC
AAAAAGCGATCATGCCACGTCAACTTGTGCAGGTCAGCCTTCCCTCCCTC
CCTCTCTCTCCCTGCTTCCCTCTTTCCTCTCACTCCCATGGCATCCGGTC
ACTTCTGA

protein sequence of rna5029

>rna5029-protein ID=rna5029-protein|Name=rna5029|organism=Nannochloropsis gaditana|type=polypeptide|length=162bp
MSSLSGAGGRPLSVGEEGRMGGGEGGGGEGKKSMAPGGVAGGSVGAGGAG
GPLVEFKQAKDYVTTIKKRFASEPHQATYKAFLKILHHYQEEQRNIMDVL
EQVSSLFADHPDLLKEFTYFLPDAVQEQAKERLNRAAEESEMRKAARQQQ
QAARMGGAWGKS

mRNA from alignment at CM002464.1:961459..962818-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna5029 ID=rna5029|Name=rna5029|organism=Nannochloropsis gaditana|type=mRNA|length=1360bp|location=Sequence derived from alignment at CM002464.1:961459..962818- (Nannochloropsis gaditana)
GGATGTCGTCCTTGTCAGGAGCAGGGGGCCGGCCGTTGTCGGTGGGGGAG
GAGGGACGGATGGGAGGCGGGGAGGGAGGGGGCGGGGAGGGGAAGAAGTC
CATGGCACCAGGGGGTGTGGCTGGAGGAAGCGTGGGGGCAGGGGGCGCGG
GAGGACCGTTGGTAAGGCGGGAGGGAGGGCGGGGTGGGGGGTGGGGGGCA
ATGGCTGTTCTGCGTCGTTTTTGTTTTCCCCTCTTCCCGTCGTGTGTCTT
GAGTGTTGGTCGTTGTGGCCCGTGCTCGCCTCCGTGTGGGCCCATGTTCG
GTCCACACCGACGTCCCCCGCAAGCGATACGGGGGATCGAACACCCTGGA
CTCGTCCCTCTTTCCCTCCCTCCCCTCTTTTTTCCTTCTCGCTCACCTTC
CTCCTTTTTTAAATCCTTGCGTGCGCACAGGTGGAGTTCAAACAGGCCAA
GGACTACGTGACCACCATCAAAAAACGCTTTGCCAGCGAGCCTCACCAGG
CGACGTACAAGGTACCGAGGGAAGGAGGGCGGGGGAGAGGGAGGGGGGTG
GGCAGCAGAAGCGGAGGAAGGCGGGGCCGTGTACGCCCTGGCTTCCGTGA
GGGAGGTGGACGAGTGTCGCGAAGGTCCATGCGCTGGAGCACACTGCCTG
CACAAGATAGGAGACCTTGGGCAGAAGTCTCGATTAGAGGCCTCGTCACG
CCGGATCCATCCCGCCGGTCGCCCCTCATGCATTCCCTCCCACCCTCCTC
GTTTCCTGGCAGGCCTTTTTGAAAATTCTTCACCATTACCAAGAGGAACA
ACGCAACATCATGGACGTGCTCGAACAGGTGGGTGGAATGCCTCGCCCGT
TTCCCTCCCCGCCCTTCCCCCCCTCTTTCCCCACCGTTGACCAGCATGTA
ACGGCCTCGCCCCCTCCGCTTCCTCCATAGGTTTCCTCCCTCTTCGCGGA
CCATCCCGATCTGCTGAAAGAGTTCACGTATTTTCTTCCTGATGCGGTTC
AGGAGCAGGTACGTTTCCTCCCTCCCTCCCTCCTCCCCTCCCTCCCTCCC
TCCCTCCCTCCCTCCTCCCCTCCCTCCCGCCACCCTCCGTTCCTGTCGCA
GCTCCCCTTCTTTTCTCCCCTTTCCCTCCTCATCTGATCTTTCGTTTTCC
CCCTCCACGTATCCTTGCTATATGTCATGTCTCTACCCACTCTTCACCTC
TCTTCGGTGCCCCCCTCCGTCCTTCCCTGCTGCCCTCCCTCCCTCCCTTC
CTTAGGCGAAGGAGCGACTGAATCGCGCCGCGGAAGAGAGTGAAATGCGG
AAAGCCGCCCGACAGCAACAGCAAGCTGCCCGCATGGGAGGCGCCTGGGG
TAAGTCGTAG

Coding sequence (CDS) from alignment at CM002464.1:961459..962818-

>rna5029 ID=rna5029|Name=rna5029|organism=Nannochloropsis gaditana|type=CDS|length=2445bp|location=Sequence derived from alignment at CM002464.1:961459..962818- (Nannochloropsis gaditana)
GCGAAGGAGCGACTGAATCGCGCCGCGGAAGAGAGTGAAATGCGGAAAGC
CGCCCGACAGCAACAGCAAGCTGCCCGCATGGGAGGCGCCTGGGGTAAGT
CGTAGGTTTCCTCCCTCTTCGCGGACCATCCCGATCTGCTGAAAGAGTTC
ACGTATTTTCTTCCTGATGCGGTTCAGGAGCAGGCCTTTTTGAAAATTCT
TCACCATTACCAAGAGGAACAACGCAACATCATGGACGTGCTCGAACAGG
TGGAGTTCAAACAGGCCAAGGACTACGTGACCACCATCAAAAAACGCTTT
GCCAGCGAGCCTCACCAGGCGACGTACAAGATGTCGTCCTTGTCAGGAGC
AGGGGGCCGGCCGTTGTCGGTGGGGGAGGAGGGACGGATGGGAGGCGGGG
AGGGAGGGGGCGGGGAGGGGAAGAAGTCCATGGCACCAGGGGGTGTGGCT
GGAGGAAGCGTGGGGGCAGGGGGCGCGGGAGGACCGTTGGCGAAGGAGCG
ACTGAATCGCGCCGCGGAAGAGAGTGAAATGCGGAAAGCCGCCCGACAGC
AACAGCAAGCTGCCCGCATGGGAGGCGCCTGGGGTAAGTCGTAGGTTTCC
TCCCTCTTCGCGGACCATCCCGATCTGCTGAAAGAGTTCACGTATTTTCT
TCCTGATGCGGTTCAGGAGCAGGCCTTTTTGAAAATTCTTCACCATTACC
AAGAGGAACAACGCAACATCATGGACGTGCTCGAACAGGTGGAGTTCAAA
CAGGCCAAGGACTACGTGACCACCATCAAAAAACGCTTTGCCAGCGAGCC
TCACCAGGCGACGTACAAGATGTCGTCCTTGTCAGGAGCAGGGGGCCGGC
CGTTGTCGGTGGGGGAGGAGGGACGGATGGGAGGCGGGGAGGGAGGGGGC
GGGGAGGGGAAGAAGTCCATGGCACCAGGGGGTGTGGCTGGAGGAAGCGT
GGGGGCAGGGGGCGCGGGAGGACCGTTGGCGAAGGAGCGACTGAATCGCG
CCGCGGAAGAGAGTGAAATGCGGAAAGCCGCCCGACAGCAACAGCAAGCT
GCCCGCATGGGAGGCGCCTGGGGTAAGTCGTAGGTTTCCTCCCTCTTCGC
GGACCATCCCGATCTGCTGAAAGAGTTCACGTATTTTCTTCCTGATGCGG
TTCAGGAGCAGGCCTTTTTGAAAATTCTTCACCATTACCAAGAGGAACAA
CGCAACATCATGGACGTGCTCGAACAGGTGGAGTTCAAACAGGCCAAGGA
CTACGTGACCACCATCAAAAAACGCTTTGCCAGCGAGCCTCACCAGGCGA
CGTACAAGATGTCGTCCTTGTCAGGAGCAGGGGGCCGGCCGTTGTCGGTG
GGGGAGGAGGGACGGATGGGAGGCGGGGAGGGAGGGGGCGGGGAGGGGAA
GAAGTCCATGGCACCAGGGGGTGTGGCTGGAGGAAGCGTGGGGGCAGGGG
GCGCGGGAGGACCGTTGGCGAAGGAGCGACTGAATCGCGCCGCGGAAGAG
AGTGAAATGCGGAAAGCCGCCCGACAGCAACAGCAAGCTGCCCGCATGGG
AGGCGCCTGGGGTAAGTCGTAGGTTTCCTCCCTCTTCGCGGACCATCCCG
ATCTGCTGAAAGAGTTCACGTATTTTCTTCCTGATGCGGTTCAGGAGCAG
GCCTTTTTGAAAATTCTTCACCATTACCAAGAGGAACAACGCAACATCAT
GGACGTGCTCGAACAGGTGGAGTTCAAACAGGCCAAGGACTACGTGACCA
CCATCAAAAAACGCTTTGCCAGCGAGCCTCACCAGGCGACGTACAAGATG
TCGTCCTTGTCAGGAGCAGGGGGCCGGCCGTTGTCGGTGGGGGAGGAGGG
ACGGATGGGAGGCGGGGAGGGAGGGGGCGGGGAGGGGAAGAAGTCCATGG
CACCAGGGGGTGTGGCTGGAGGAAGCGTGGGGGCAGGGGGCGCGGGAGGA
CCGTTGGCGAAGGAGCGACTGAATCGCGCCGCGGAAGAGAGTGAAATGCG
GAAAGCCGCCCGACAGCAACAGCAAGCTGCCCGCATGGGAGGCGCCTGGG
GTAAGTCGTAGGTTTCCTCCCTCTTCGCGGACCATCCCGATCTGCTGAAA
GAGTTCACGTATTTTCTTCCTGATGCGGTTCAGGAGCAGGCCTTTTTGAA
AATTCTTCACCATTACCAAGAGGAACAACGCAACATCATGGACGTGCTCG
AACAGGTGGAGTTCAAACAGGCCAAGGACTACGTGACCACCATCAAAAAA
CGCTTTGCCAGCGAGCCTCACCAGGCGACGTACAAGATGTCGTCCTTGTC
AGGAGCAGGGGGCCGGCCGTTGTCGGTGGGGGAGGAGGGACGGATGGGAG
GCGGGGAGGGAGGGGGCGGGGAGGGGAAGAAGTCCATGGCACCAGGGGGT
GTGGCTGGAGGAAGCGTGGGGGCAGGGGGCGCGGGAGGACCGTTG

Synonyms

Publications