EWM25655.1, cds5017 (CDS) Nannochloropsis gaditana

Overview
NameEWM25655.1
Unique Namecds5017
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002464.1:962658..962816 -
Alignment locationCM002464.1:962308..962388 -
Alignment locationCM002464.1:961991..962056 -
Alignment locationCM002464.1:961811..961888 -
Alignment locationCM002464.1:961459..961563 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM25655.1
Producthistone deacetylase sin3 component
Orig transcript idgnl|cribi|Naga_100500g4.3107.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:962658..962816 -
CM002464.1supercontigCM002464.1:962308..962388 -
CM002464.1supercontigCM002464.1:961991..962056 -
CM002464.1supercontigCM002464.1:961811..961888 -
CM002464.1supercontigCM002464.1:961459..961563 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0009058biosynthetic process
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0140110transcription regulator activity
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: INTERPRO
TermDefinition
IPR003822PAH
Homology
BLAST of EWM25655.1 vs. NCBI_GenBank
Match: gi|585107484|gb|EWM25655.1| (histone deacetylase sin3 component [Nannochloropsis gaditana])

HSP 1 Score: 326.635 bits (836), Expect = 3.672e-113
Identity = 162/162 (100.00%), Postives = 162/162 (100.00%), Query Frame = 0
Query:    1 MSSLSGAGGRPLSVGEEGRMGGGEGGGGEGKKSMAPGGVAGGSVGAGGAGGPLVEFKQAKDYVTTIKKRFASEPHQATYKAFLKILHHYQEEQRNIMDVLEQVSSLFADHPDLLKEFTYFLPDAVQEQAKERLNRAAEESEMRKAARQQQQAARMGGAWGKS 162
            MSSLSGAGGRPLSVGEEGRMGGGEGGGGEGKKSMAPGGVAGGSVGAGGAGGPLVEFKQAKDYVTTIKKRFASEPHQATYKAFLKILHHYQEEQRNIMDVLEQVSSLFADHPDLLKEFTYFLPDAVQEQAKERLNRAAEESEMRKAARQQQQAARMGGAWGKS
Sbjct:    1 MSSLSGAGGRPLSVGEEGRMGGGEGGGGEGKKSMAPGGVAGGSVGAGGAGGPLVEFKQAKDYVTTIKKRFASEPHQATYKAFLKILHHYQEEQRNIMDVLEQVSSLFADHPDLLKEFTYFLPDAVQEQAKERLNRAAEESEMRKAARQQQQAARMGGAWGKS 162          
BLAST of EWM25655.1 vs. NCBI_GenBank
Match: gi|1214707914|gb|OWZ19254.1| (Paired amphipathic helix protein Sin3 [Phytophthora megakarya])

HSP 1 Score: 149.443 bits (376), Expect = 9.637e-39
Identity = 82/149 (55.03%), Postives = 98/149 (65.77%), Query Frame = 0
Query:   10 RPLSVGEEGRMGGGEGGGGEGKKSMAPGGVAGGSVGAGGAGGPLVEFKQAKDYVTTIKKRFASEPHQATYKAFLKILHHYQEEQRNIMDVLEQVSSLFADHPDLLKEFTYFLPDAVQEQAKERLNRAAEESEMRKAARQQQQAARMGGA 158
            +P     +   GG     G+ KK       +GG+V A  +  P VEF  A  YVTTIK+RFA EP   TYK FL ILH YQ+EQR+I  VL+QVS LF DHPDLL+EFT+FLPDAVQEQAKERLNRAAE+++ RK   Q  Q AR  G+
Sbjct:  360 KPTPSSRQQLPGGQMKNSGKPKKQQPAPTPSGGNVAARSSTNP-VEFDHAIHYVTTIKQRFADEPE--TYKEFLAILHTYQKEQRSIRQVLDQVSHLFRDHPDLLREFTFFLPDAVQEQAKERLNRAAEKAQQRK--DQMAQKARKYGS 503          
BLAST of EWM25655.1 vs. NCBI_GenBank
Match: gi|970659897|gb|KUF97496.1| (hypothetical protein AM588_10009571 [Phytophthora nicotianae])

HSP 1 Score: 146.747 bits (369), Expect = 1.061e-37
Identity = 80/136 (58.82%), Postives = 96/136 (70.59%), Query Frame = 0
Query:   25 GGGGEGKKSMAPGGVAGGSVGAGGAGGPLVEFKQAKDYVTTIKKRFASEPHQATYKAFLKILHHYQEEQRNIMDVLEQVSSLFADHPDLLKEFTYFLPDAVQEQAKERLNRAAEESEMRKAARQQQQAARMGGAWG 160
            GG  + ++  AP   +GG+  A  +  P VEF  A  YVTTIK+RFA EP   TYK FL ILH YQ+EQR+I  VL+QVS LF DHPDLL+EFT+FLPDAVQEQAKERLNRAAE+++ RK   Q  Q AR  G+ G
Sbjct:   54 GGKPKKQQQQAPAP-SGGNAAARSSTNP-VEFDHAIHYVTTIKQRFADEPE--TYKEFLAILHTYQKEQRSIRQVLDQVSHLFRDHPDLLREFTFFLPDAVQEQAKERLNRAAEKAQQRK--DQMAQKARKYGSQG 183          
BLAST of EWM25655.1 vs. NCBI_GenBank
Match: gi|970664446|gb|KUG01348.1| (Paired amphipathic helix protein Sin3a [Phytophthora nicotianae])

HSP 1 Score: 146.362 bits (368), Expect = 1.534e-37
Identity = 80/136 (58.82%), Postives = 96/136 (70.59%), Query Frame = 0
Query:   25 GGGGEGKKSMAPGGVAGGSVGAGGAGGPLVEFKQAKDYVTTIKKRFASEPHQATYKAFLKILHHYQEEQRNIMDVLEQVSSLFADHPDLLKEFTYFLPDAVQEQAKERLNRAAEESEMRKAARQQQQAARMGGAWG 160
            GG  + ++  AP   +GG+  A  +  P VEF  A  YVTTIK+RFA EP   TYK FL ILH YQ+EQR+I  VL+QVS LF DHPDLL+EFT+FLPDAVQEQAKERLNRAAE+++ RK   Q  Q AR  G+ G
Sbjct:  346 GGKPKKQQQQAPAP-SGGNAAARSSTNP-VEFDHAIHYVTTIKQRFADEPE--TYKEFLAILHTYQKEQRSIRQVLDQVSHLFRDHPDLLREFTFFLPDAVQEQAKERLNRAAEKAQQRK--DQMAQKARKYGSQG 475          
BLAST of EWM25655.1 vs. NCBI_GenBank
Match: gi|568049855|gb|ETM46821.1| (hypothetical protein L914_08380 [Phytophthora parasitica])

HSP 1 Score: 145.976 bits (367), Expect = 1.597e-37
Identity = 80/136 (58.82%), Postives = 96/136 (70.59%), Query Frame = 0
Query:   25 GGGGEGKKSMAPGGVAGGSVGAGGAGGPLVEFKQAKDYVTTIKKRFASEPHQATYKAFLKILHHYQEEQRNIMDVLEQVSSLFADHPDLLKEFTYFLPDAVQEQAKERLNRAAEESEMRKAARQQQQAARMGGAWG 160
            GG  + ++  AP   +GG+  A  +  P VEF  A  YVTTIK+RFA EP   TYK FL ILH YQ+EQR+I  VL+QVS LF DHPDLL+EFT+FLPDAVQEQAKERLNRAAE+++ RK   Q  Q AR  G+ G
Sbjct:  392 GGKPKKQQQQAPAP-SGGNAAARSSTNP-VEFDHAIHYVTTIKQRFADEPE--TYKEFLAILHTYQKEQRSIRQVLDQVSHLFRDHPDLLREFTFFLPDAVQEQAKERLNRAAEKAQQRK--DQMAQKARKYGSQG 521          
BLAST of EWM25655.1 vs. NCBI_GenBank
Match: gi|570951600|gb|ETP16857.1| (hypothetical protein F441_08645 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 145.976 bits (367), Expect = 1.644e-37
Identity = 80/136 (58.82%), Postives = 96/136 (70.59%), Query Frame = 0
Query:   25 GGGGEGKKSMAPGGVAGGSVGAGGAGGPLVEFKQAKDYVTTIKKRFASEPHQATYKAFLKILHHYQEEQRNIMDVLEQVSSLFADHPDLLKEFTYFLPDAVQEQAKERLNRAAEESEMRKAARQQQQAARMGGAWG 160
            GG  + ++  AP   +GG+  A  +  P VEF  A  YVTTIK+RFA EP   TYK FL ILH YQ+EQR+I  VL+QVS LF DHPDLL+EFT+FLPDAVQEQAKERLNRAAE+++ RK   Q  Q AR  G+ G
Sbjct:  392 GGKPKKQQQQAPAP-SGGNAAARSSTNP-VEFDHAIHYVTTIKQRFADEPE--TYKEFLAILHTYQKEQRSIRQVLDQVSHLFRDHPDLLREFTFFLPDAVQEQAKERLNRAAEKAQQRK--DQMAQKARKYGSQG 521          
BLAST of EWM25655.1 vs. NCBI_GenBank
Match: gi|675193259|ref|XP_008905514.1| (hypothetical protein PPTG_11020 [Phytophthora parasitica INRA-310] >gi|568094171|gb|ETN08953.1| hypothetical protein PPTG_11020 [Phytophthora parasitica INRA-310])

HSP 1 Score: 145.976 bits (367), Expect = 1.693e-37
Identity = 80/136 (58.82%), Postives = 96/136 (70.59%), Query Frame = 0
Query:   25 GGGGEGKKSMAPGGVAGGSVGAGGAGGPLVEFKQAKDYVTTIKKRFASEPHQATYKAFLKILHHYQEEQRNIMDVLEQVSSLFADHPDLLKEFTYFLPDAVQEQAKERLNRAAEESEMRKAARQQQQAARMGGAWG 160
            GG  + ++  AP   +GG+  A  +  P VEF  A  YVTTIK+RFA EP   TYK FL ILH YQ+EQR+I  VL+QVS LF DHPDLL+EFT+FLPDAVQEQAKERLNRAAE+++ RK   Q  Q AR  G+ G
Sbjct:  392 GGKPKKQQQQAPAP-SGGNAAARSSTNP-VEFDHAIHYVTTIKQRFADEPE--TYKEFLAILHTYQKEQRSIRQVLDQVSHLFRDHPDLLREFTFFLPDAVQEQAKERLNRAAEKAQQRK--DQMAQKARKYGSQG 521          
BLAST of EWM25655.1 vs. NCBI_GenBank
Match: gi|566024155|gb|ETI47066.1| (hypothetical protein F443_08668 [Phytophthora parasitica P1569])

HSP 1 Score: 145.976 bits (367), Expect = 1.693e-37
Identity = 80/136 (58.82%), Postives = 96/136 (70.59%), Query Frame = 0
Query:   25 GGGGEGKKSMAPGGVAGGSVGAGGAGGPLVEFKQAKDYVTTIKKRFASEPHQATYKAFLKILHHYQEEQRNIMDVLEQVSSLFADHPDLLKEFTYFLPDAVQEQAKERLNRAAEESEMRKAARQQQQAARMGGAWG 160
            GG  + ++  AP   +GG+  A  +  P VEF  A  YVTTIK+RFA EP   TYK FL ILH YQ+EQR+I  VL+QVS LF DHPDLL+EFT+FLPDAVQEQAKERLNRAAE+++ RK   Q  Q AR  G+ G
Sbjct:  392 GGKPKKQQQQAPAP-SGGNAAARSSTNP-VEFDHAIHYVTTIKQRFADEPE--TYKEFLAILHTYQKEQRSIRQVLDQVSHLFRDHPDLLREFTFFLPDAVQEQAKERLNRAAEKAQQRK--DQMAQKARKYGSQG 521          
BLAST of EWM25655.1 vs. NCBI_GenBank
Match: gi|570985696|gb|ETP44914.1| (hypothetical protein F442_08600 [Phytophthora parasitica P10297])

HSP 1 Score: 145.976 bits (367), Expect = 1.709e-37
Identity = 80/136 (58.82%), Postives = 96/136 (70.59%), Query Frame = 0
Query:   25 GGGGEGKKSMAPGGVAGGSVGAGGAGGPLVEFKQAKDYVTTIKKRFASEPHQATYKAFLKILHHYQEEQRNIMDVLEQVSSLFADHPDLLKEFTYFLPDAVQEQAKERLNRAAEESEMRKAARQQQQAARMGGAWG 160
            GG  + ++  AP   +GG+  A  +  P VEF  A  YVTTIK+RFA EP   TYK FL ILH YQ+EQR+I  VL+QVS LF DHPDLL+EFT+FLPDAVQEQAKERLNRAAE+++ RK   Q  Q AR  G+ G
Sbjct:  392 GGKPKKQQQQAPAP-SGGNAAARSSTNP-VEFDHAIHYVTTIKQRFADEPE--TYKEFLAILHTYQKEQRSIRQVLDQVSHLFRDHPDLLREFTFFLPDAVQEQAKERLNRAAEKAQQRK--DQMAQKARKYGSQG 521          
BLAST of EWM25655.1 vs. NCBI_GenBank
Match: gi|567961452|gb|ETK86994.1| (hypothetical protein L915_08502 [Phytophthora parasitica])

HSP 1 Score: 145.976 bits (367), Expect = 1.709e-37
Identity = 80/136 (58.82%), Postives = 96/136 (70.59%), Query Frame = 0
Query:   25 GGGGEGKKSMAPGGVAGGSVGAGGAGGPLVEFKQAKDYVTTIKKRFASEPHQATYKAFLKILHHYQEEQRNIMDVLEQVSSLFADHPDLLKEFTYFLPDAVQEQAKERLNRAAEESEMRKAARQQQQAARMGGAWG 160
            GG  + ++  AP   +GG+  A  +  P VEF  A  YVTTIK+RFA EP   TYK FL ILH YQ+EQR+I  VL+QVS LF DHPDLL+EFT+FLPDAVQEQAKERLNRAAE+++ RK   Q  Q AR  G+ G
Sbjct:  392 GGKPKKQQQQAPAP-SGGNAAARSSTNP-VEFDHAIHYVTTIKQRFADEPE--TYKEFLAILHTYQKEQRSIRQVLDQVSHLFRDHPDLLREFTFFLPDAVQEQAKERLNRAAEKAQQRK--DQMAQKARKYGSQG 521          
The following BLAST results are available for this feature:
BLAST of EWM25655.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585107484|gb|EWM25655.1|3.672e-113100.00histone deacetylase sin3 component [Nannochloropsi... [more]
gi|1214707914|gb|OWZ19254.1|9.637e-3955.03Paired amphipathic helix protein Sin3 [Phytophthor... [more]
gi|970659897|gb|KUF97496.1|1.061e-3758.82hypothetical protein AM588_10009571 [Phytophthora ... [more]
gi|970664446|gb|KUG01348.1|1.534e-3758.82Paired amphipathic helix protein Sin3a [Phytophtho... [more]
gi|568049855|gb|ETM46821.1|1.597e-3758.82hypothetical protein L914_08380 [Phytophthora para... [more]
gi|570951600|gb|ETP16857.1|1.644e-3758.82hypothetical protein F441_08645 [Phytophthora para... [more]
gi|675193259|ref|XP_008905514.1|1.693e-3758.82hypothetical protein PPTG_11020 [Phytophthora para... [more]
gi|566024155|gb|ETI47066.1|1.693e-3758.82hypothetical protein F443_08668 [Phytophthora para... [more]
gi|570985696|gb|ETP44914.1|1.709e-3758.82hypothetical protein F442_08600 [Phytophthora para... [more]
gi|567961452|gb|ETK86994.1|1.709e-3758.82hypothetical protein L915_08502 [Phytophthora para... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5029rna5029Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications