rna5028, rna5028 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna5028
Unique Name	rna5028
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1049
Alignment location	CM002464.1:960144..960729 -

Link to JBrowse

Properties


Property Name	Value
Product	paired amphipathic helix protein sin3
Orig transcript id	gnl\|cribi\|Naga_102439g1.5852.mrna
Orig protein id	gnl\|cribi\|Naga_102439g1.5852
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002464.1	supercontig	CM002464.1:960144..960729 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_102439g1	gene4856	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna5028	rna5028-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25657.1	cds5016	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002464.1:960144..960729-
coding sequence from alignment at CM002464.1:960144..960729-

mRNA sequence

>rna5028 ID=rna5028|Name=rna5028|organism=Nannochloropsis gaditana|type=mRNA|length=1049bp
CCCCCCCAAGCCCCGGTGTCTTCCCGTTCGTTTCCTCCCTCCTTTCCAGT
GGTCGCACCCCACTGGACCCTCGCCGGTCTGCTCATTCGCCTCGTTTCCT
CCCTCCCTTCCCCACCGCCGCCTTTCCCTCTCTAGGTGGTGGCGTACCTG
GTGAAGCAGCTGCAGCATCTCGCCGACGAGGAGGCTTTTGATCAGTGCAT
GGAAGTCTACAAAGCAGAGCGAGCTGCCCGTGGCAATTTGGCGCCTTCCA
ACTACCAGAGCCGCGCCGCTGATGTCTTAGGGGCACGCGGGCACGGAGGG
GAGGAGCTCTACCGGCTGACGTACATCCCAGGACCGAAGAGCCTCCCCAC
GCACAAGGAGGAAGACCCTGTCCGAGACTCCCTCCTGCTCCTCCAATATG
TGGGTCTGGTCGACGAAGGCAGTGCCAACAAGGATATGACGAGCCTGCTG
GACGAGGCCCGGATGGCGGAGGATGAACGAGAGATGGTGGTGGCGGAGGA
GGGAGAAGGAGGGGGAGAGGAAGAGGGAGCCGTCGACGAGAAGGGGACAG
GGGCTGCGTCCGCGGGAGCGGGGATAGGAGGGGAGGAAGAGCAGGAAGGG
GAGGGCTCGGCGGGTGCAGGAGGGGGAAAGAGGGGGGTGGAAGACGGAGG
AGGGGACTGGGAAGGGAGCAAGAGGGCGCGAAATGAATAGGAAGGTGAGG
AGGGGAAGAAGAGCCAATCGTACGATGTTGGATGAATGTCGAGCAGGCTT
TTTTGCTCGGCAAGGAGACAGAAGAAGAGCGCCCCGACAGAAGAGAGCAA
AGACGAGAAAGCGAAGACGGGGTGGTAAGAAAGGGGAAAAGGAACGGGCT
CTGAATCAAGAAAGTATGGGGAAGAGTCAGTGTAAACTCCTCTTCTCCGA
GGGCAGAGCGCGCGGGGCGCAGTTGAGTGGGGAAAAGCTTCCTATCGTAC
GTAATGGCGTGAAGAGAGAGGATGCGGAGGCAGGAGAATGTACTCAAGGA
GTATGGAAAAGGAAGAGTAAATTTGCAAAAGCTTCGAGCCTCCAGAACG

protein sequence of rna5028

>rna5028-protein ID=rna5028-protein|Name=rna5028|organism=Nannochloropsis gaditana|type=polypeptide|length=85bp
MFTVLELLRKNPAGAIPVILRRLKQKDLEWRKARQDLNKGWKDVLEKNYH
KKRSCHVNLCRSAFPPSLSLPASLFPLTPMASGHF

mRNA from alignment at CM002464.1:960144..960729-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna5028 ID=rna5028|Name=rna5028|organism=Nannochloropsis gaditana|type=mRNA|length=586bp|location=Sequence derived from alignment at CM002464.1:960144..960729- (Nannochloropsis gaditana)
ATGTTTACCGTCTCTTCCTGCCGTTGTTCCTCTTCTCTGTCACGCACCCT
CCCTGTCCTCCTTCCCTCCCTCCTTCCCTCCCTCCTTCCCTCCCTCCCTC
CCTCCCTTCTCCAGGTCCTGGAGCTCCTACGGAAGAACCCTGCGGGGGCG
ATCCCAGTCATCCTCCGCCGCCTCAAGCAGAAAGATTTGGAATGGCGAAA
AGCTCGCCAGGTGCGGCGCGCCTGCCTTCCCTCCTTCTCTTCCTTTCGGC
CCCCCCCCCTGCTTCTGGTCACCCCATTTCTGTTCTTTTGAAAGCGGCAT
CTCGCGTCCAGTGCTTTCCTCCTTCGTCTCTCTAAGGTTCTCCCTCCCCA
CCTCCCTCCCTTTCTCCCTCTCTGTCCCCCCCTCCCCCAGGACCTGAACA
AAGGCTGGAAAGACGTGCTGGAGAAGAACTACCACAAGTCGCTCGACCAC
CGCTCCTTCTACTTCGGGCAACAGGACAAGAAAGCGATCATGCCACGTCA
ACTTGTGCAGGTCAGCCTTCCCTCCCTCCCTCTCTCTCCCTGCTTCCCTC
TTTCCTCTCACTCCCATGGCATCCGGTCACTTCTGA

Coding sequence (CDS) from alignment at CM002464.1:960144..960729-

>rna5028 ID=rna5028|Name=rna5028|organism=Nannochloropsis gaditana|type=CDS|length=1032bp|location=Sequence derived from alignment at CM002464.1:960144..960729- (Nannochloropsis gaditana)
AAAGCGATCATGCCACGTCAACTTGTGCAGGTCAGCCTTCCCTCCCTCCC
TCTCTCTCCCTGCTTCCCTCTTTCCTCTCACTCCCATGGCATCCGGTCAC
TTCTGAGACCTGAACAAAGGCTGGAAAGACGTGCTGGAGAAGAACTACCA
CAAGTCCTGGAGCTCCTACGGAAGAACCCTGCGGGGGCGATCCCAGTCAT
CCTCCGCCGCCTCAAGCAGAAAGATTTGGAATGGCGAAAAGCTCGCCAGA
TGTTTACCAAAGCGATCATGCCACGTCAACTTGTGCAGGTCAGCCTTCCC
TCCCTCCCTCTCTCTCCCTGCTTCCCTCTTTCCTCTCACTCCCATGGCAT
CCGGTCACTTCTGAGACCTGAACAAAGGCTGGAAAGACGTGCTGGAGAAG
AACTACCACAAGTCCTGGAGCTCCTACGGAAGAACCCTGCGGGGGCGATC
CCAGTCATCCTCCGCCGCCTCAAGCAGAAAGATTTGGAATGGCGAAAAGC
TCGCCAGATGTTTACCAAAGCGATCATGCCACGTCAACTTGTGCAGGTCA
GCCTTCCCTCCCTCCCTCTCTCTCCCTGCTTCCCTCTTTCCTCTCACTCC
CATGGCATCCGGTCACTTCTGAGACCTGAACAAAGGCTGGAAAGACGTGC
TGGAGAAGAACTACCACAAGTCCTGGAGCTCCTACGGAAGAACCCTGCGG
GGGCGATCCCAGTCATCCTCCGCCGCCTCAAGCAGAAAGATTTGGAATGG
CGAAAAGCTCGCCAGATGTTTACCAAAGCGATCATGCCACGTCAACTTGT
GCAGGTCAGCCTTCCCTCCCTCCCTCTCTCTCCCTGCTTCCCTCTTTCCT
CTCACTCCCATGGCATCCGGTCACTTCTGAGACCTGAACAAAGGCTGGAA
AGACGTGCTGGAGAAGAACTACCACAAGTCCTGGAGCTCCTACGGAAGAA
CCCTGCGGGGGCGATCCCAGTCATCCTCCGCCGCCTCAAGCAGAAAGATT
TGGAATGGCGAAAAGCTCGCCAGATGTTTACC

Synonyms

Publications