EWM25657.1, cds5016 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM25657.1 vs. NCBI_GenBank
Match: gi|585107488|gb|EWM25657.1| (paired amphipathic helix protein sin3 [Nannochloropsis gaditana]) HSP 1 Score: 176.792 bits (447), Expect = 3.272e-56 Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 0
Query: 1 MFTVLELLRKNPAGAIPVILRRLKQKDLEWRKARQDLNKGWKDVLEKNYHKKRSCHVNLCRSAFPPSLSLPASLFPLTPMASGHF 85
MFTVLELLRKNPAGAIPVILRRLKQKDLEWRKARQDLNKGWKDVLEKNYHKKRSCHVNLCRSAFPPSLSLPASLFPLTPMASGHF
Sbjct: 1 MFTVLELLRKNPAGAIPVILRRLKQKDLEWRKARQDLNKGWKDVLEKNYHKKRSCHVNLCRSAFPPSLSLPASLFPLTPMASGHF 85
BLAST of EWM25657.1 vs. NCBI_GenBank
Match: gi|1173929891|gb|OQR83049.1| (paired amphipathic helix protein Sin3 [Achlya hypogyna]) HSP 1 Score: 88.5817 bits (218), Expect = 9.750e-19 Identity = 40/48 (83.33%), Postives = 45/48 (93.75%), Query Frame = 0
Query: 4 VLELLRKNPAGAIPVILRRLKQKDLEWRKARQDLNKGWKDVLEKNYHK 51
+LELLRK+PAGAIPVIL+RL+QKD EWR+ARQDLNK WKDV EKNYHK
Sbjct: 782 ILELLRKHPAGAIPVILKRLQQKDEEWRRARQDLNKQWKDVNEKNYHK 829
BLAST of EWM25657.1 vs. NCBI_GenBank
Match: gi|669152040|ref|XP_008611582.1| (hypothetical protein SDRG_07523 [Saprolegnia diclina VS20] >gi|530737056|gb|EQC35298.1| hypothetical protein SDRG_07523 [Saprolegnia diclina VS20]) HSP 1 Score: 87.0409 bits (214), Expect = 3.847e-18 Identity = 40/48 (83.33%), Postives = 44/48 (91.67%), Query Frame = 0
Query: 4 VLELLRKNPAGAIPVILRRLKQKDLEWRKARQDLNKGWKDVLEKNYHK 51
+LELLRK+PAGAIPVIL+RL QKD EWR+ARQDLNK WKDV EKNYHK
Sbjct: 787 ILELLRKHPAGAIPVILKRLLQKDEEWRRARQDLNKQWKDVNEKNYHK 834
BLAST of EWM25657.1 vs. NCBI_GenBank
Match: gi|813185405|ref|XP_012206874.1| (hypothetical protein SPRG_22307 [Saprolegnia parasitica CBS 223.65] >gi|641528224|gb|KDO22464.1| hypothetical protein SPRG_22307 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 87.0409 bits (214), Expect = 4.078e-18 Identity = 40/48 (83.33%), Postives = 44/48 (91.67%), Query Frame = 0
Query: 4 VLELLRKNPAGAIPVILRRLKQKDLEWRKARQDLNKGWKDVLEKNYHK 51
+LELLRK+PAGAIPVIL+RL QKD EWR+ARQDLNK WKDV EKNYHK
Sbjct: 411 ILELLRKHPAGAIPVILKRLLQKDEEWRRARQDLNKQWKDVNEKNYHK 458
BLAST of EWM25657.1 vs. NCBI_GenBank
Match: gi|1173948624|gb|OQR96732.1| (paired amphipathic helix protein Sin3 [Thraustotheca clavata]) HSP 1 Score: 86.2705 bits (212), Expect = 6.502e-18 Identity = 39/48 (81.25%), Postives = 45/48 (93.75%), Query Frame = 0
Query: 4 VLELLRKNPAGAIPVILRRLKQKDLEWRKARQDLNKGWKDVLEKNYHK 51
+LELLRK+PAGAIPVIL+RL+QKD EWR+ARQDLNK WK+V EKNYHK
Sbjct: 762 ILELLRKHPAGAIPVILKRLQQKDEEWRRARQDLNKQWKEVNEKNYHK 809
BLAST of EWM25657.1 vs. NCBI_GenBank
Match: gi|673042051|ref|XP_008874986.1| (hypothetical protein H310_10388 [Aphanomyces invadans] >gi|574469179|gb|ETV96194.1| hypothetical protein H310_10388 [Aphanomyces invadans]) HSP 1 Score: 85.1149 bits (209), Expect = 2.011e-17 Identity = 39/48 (81.25%), Postives = 44/48 (91.67%), Query Frame = 0
Query: 4 VLELLRKNPAGAIPVILRRLKQKDLEWRKARQDLNKGWKDVLEKNYHK 51
+LELL K+PAGAIPVIL+RL+QKD EWR+ARQDLNK WKDV EKNYHK
Sbjct: 789 MLELLAKHPAGAIPVILKRLQQKDEEWRRARQDLNKQWKDVNEKNYHK 836
BLAST of EWM25657.1 vs. NCBI_GenBank
Match: gi|301111330|ref|XP_002904744.1| (paired amphipathic helix protein Sin3, putative [Phytophthora infestans T30-4] >gi|262095074|gb|EEY53126.1| paired amphipathic helix protein Sin3, putative [Phytophthora infestans T30-4]) HSP 1 Score: 84.7297 bits (208), Expect = 2.407e-17 Identity = 37/48 (77.08%), Postives = 44/48 (91.67%), Query Frame = 0
Query: 4 VLELLRKNPAGAIPVILRRLKQKDLEWRKARQDLNKGWKDVLEKNYHK 51
+LELLRK PAGAIP+IL+RLKQKD EWR+AR+DLN+ WK+V EKNYHK
Sbjct: 840 ILELLRKYPAGAIPIILKRLKQKDEEWRRAREDLNRQWKEVNEKNYHK 887
BLAST of EWM25657.1 vs. NCBI_GenBank
Match: gi|970659897|gb|KUF97496.1| (hypothetical protein AM588_10009571 [Phytophthora nicotianae]) HSP 1 Score: 84.7297 bits (208), Expect = 2.568e-17 Identity = 37/48 (77.08%), Postives = 44/48 (91.67%), Query Frame = 0
Query: 4 VLELLRKNPAGAIPVILRRLKQKDLEWRKARQDLNKGWKDVLEKNYHK 51
+LELLRK PAGAIP+IL+RLKQKD EWR+AR+DLN+ WK+V EKNYHK
Sbjct: 595 ILELLRKYPAGAIPIILKRLKQKDEEWRRAREDLNRQWKEVNEKNYHK 642
BLAST of EWM25657.1 vs. NCBI_GenBank
Match: gi|1214707914|gb|OWZ19254.1| (Paired amphipathic helix protein Sin3 [Phytophthora megakarya]) HSP 1 Score: 84.3445 bits (207), Expect = 3.101e-17 Identity = 38/48 (79.17%), Postives = 44/48 (91.67%), Query Frame = 0
Query: 4 VLELLRKNPAGAIPVILRRLKQKDLEWRKARQDLNKGWKDVLEKNYHK 51
+LELLRK PAGAIPVIL+RLKQKD EWR+AR+DLN+ WK+V EKNYHK
Sbjct: 820 ILELLRKFPAGAIPVILQRLKQKDEEWRRAREDLNRQWKEVNEKNYHK 867
BLAST of EWM25657.1 vs. NCBI_GenBank
Match: gi|953489519|emb|CEG46885.1| (paired amphipathic helix protein [Plasmopara halstedii]) HSP 1 Score: 83.9593 bits (206), Expect = 5.194e-17 Identity = 37/48 (77.08%), Postives = 44/48 (91.67%), Query Frame = 0
Query: 4 VLELLRKNPAGAIPVILRRLKQKDLEWRKARQDLNKGWKDVLEKNYHK 51
+LELLRK PAGAIP+IL+RLKQKD EWR+AR+DLN+ WK+V EKNYHK
Sbjct: 835 ILELLRKFPAGAIPIILKRLKQKDEEWRRAREDLNRQWKEVNEKNYHK 882 The following BLAST results are available for this feature:
BLAST of EWM25657.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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