EWM25657.1, cds5016 (CDS) Nannochloropsis gaditana

Overview
NameEWM25657.1
Unique Namecds5016
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002464.1:960721..960729 -
Alignment locationCM002464.1:960520..960615 -
Alignment locationCM002464.1:960293..960339 -
Alignment locationCM002464.1:960144..960249 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM25657.1
Productpaired amphipathic helix protein sin3
Orig transcript idgnl|cribi|Naga_102439g1.5852.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:960721..960729 -
CM002464.1supercontigCM002464.1:960520..960615 -
CM002464.1supercontigCM002464.1:960293..960339 -
CM002464.1supercontigCM002464.1:960144..960249 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0009058biosynthetic process
Vocabulary: Molecular Function
TermDefinition
GO:0140110transcription regulator activity
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Homology
BLAST of EWM25657.1 vs. NCBI_GenBank
Match: gi|585107488|gb|EWM25657.1| (paired amphipathic helix protein sin3 [Nannochloropsis gaditana])

HSP 1 Score: 176.792 bits (447), Expect = 3.272e-56
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 0
Query:    1 MFTVLELLRKNPAGAIPVILRRLKQKDLEWRKARQDLNKGWKDVLEKNYHKKRSCHVNLCRSAFPPSLSLPASLFPLTPMASGHF 85
            MFTVLELLRKNPAGAIPVILRRLKQKDLEWRKARQDLNKGWKDVLEKNYHKKRSCHVNLCRSAFPPSLSLPASLFPLTPMASGHF
Sbjct:    1 MFTVLELLRKNPAGAIPVILRRLKQKDLEWRKARQDLNKGWKDVLEKNYHKKRSCHVNLCRSAFPPSLSLPASLFPLTPMASGHF 85          
BLAST of EWM25657.1 vs. NCBI_GenBank
Match: gi|1173929891|gb|OQR83049.1| (paired amphipathic helix protein Sin3 [Achlya hypogyna])

HSP 1 Score: 88.5817 bits (218), Expect = 9.750e-19
Identity = 40/48 (83.33%), Postives = 45/48 (93.75%), Query Frame = 0
Query:    4 VLELLRKNPAGAIPVILRRLKQKDLEWRKARQDLNKGWKDVLEKNYHK 51
            +LELLRK+PAGAIPVIL+RL+QKD EWR+ARQDLNK WKDV EKNYHK
Sbjct:  782 ILELLRKHPAGAIPVILKRLQQKDEEWRRARQDLNKQWKDVNEKNYHK 829          
BLAST of EWM25657.1 vs. NCBI_GenBank
Match: gi|669152040|ref|XP_008611582.1| (hypothetical protein SDRG_07523 [Saprolegnia diclina VS20] >gi|530737056|gb|EQC35298.1| hypothetical protein SDRG_07523 [Saprolegnia diclina VS20])

HSP 1 Score: 87.0409 bits (214), Expect = 3.847e-18
Identity = 40/48 (83.33%), Postives = 44/48 (91.67%), Query Frame = 0
Query:    4 VLELLRKNPAGAIPVILRRLKQKDLEWRKARQDLNKGWKDVLEKNYHK 51
            +LELLRK+PAGAIPVIL+RL QKD EWR+ARQDLNK WKDV EKNYHK
Sbjct:  787 ILELLRKHPAGAIPVILKRLLQKDEEWRRARQDLNKQWKDVNEKNYHK 834          
BLAST of EWM25657.1 vs. NCBI_GenBank
Match: gi|813185405|ref|XP_012206874.1| (hypothetical protein SPRG_22307 [Saprolegnia parasitica CBS 223.65] >gi|641528224|gb|KDO22464.1| hypothetical protein SPRG_22307 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 87.0409 bits (214), Expect = 4.078e-18
Identity = 40/48 (83.33%), Postives = 44/48 (91.67%), Query Frame = 0
Query:    4 VLELLRKNPAGAIPVILRRLKQKDLEWRKARQDLNKGWKDVLEKNYHK 51
            +LELLRK+PAGAIPVIL+RL QKD EWR+ARQDLNK WKDV EKNYHK
Sbjct:  411 ILELLRKHPAGAIPVILKRLLQKDEEWRRARQDLNKQWKDVNEKNYHK 458          
BLAST of EWM25657.1 vs. NCBI_GenBank
Match: gi|1173948624|gb|OQR96732.1| (paired amphipathic helix protein Sin3 [Thraustotheca clavata])

HSP 1 Score: 86.2705 bits (212), Expect = 6.502e-18
Identity = 39/48 (81.25%), Postives = 45/48 (93.75%), Query Frame = 0
Query:    4 VLELLRKNPAGAIPVILRRLKQKDLEWRKARQDLNKGWKDVLEKNYHK 51
            +LELLRK+PAGAIPVIL+RL+QKD EWR+ARQDLNK WK+V EKNYHK
Sbjct:  762 ILELLRKHPAGAIPVILKRLQQKDEEWRRARQDLNKQWKEVNEKNYHK 809          
BLAST of EWM25657.1 vs. NCBI_GenBank
Match: gi|673042051|ref|XP_008874986.1| (hypothetical protein H310_10388 [Aphanomyces invadans] >gi|574469179|gb|ETV96194.1| hypothetical protein H310_10388 [Aphanomyces invadans])

HSP 1 Score: 85.1149 bits (209), Expect = 2.011e-17
Identity = 39/48 (81.25%), Postives = 44/48 (91.67%), Query Frame = 0
Query:    4 VLELLRKNPAGAIPVILRRLKQKDLEWRKARQDLNKGWKDVLEKNYHK 51
            +LELL K+PAGAIPVIL+RL+QKD EWR+ARQDLNK WKDV EKNYHK
Sbjct:  789 MLELLAKHPAGAIPVILKRLQQKDEEWRRARQDLNKQWKDVNEKNYHK 836          
BLAST of EWM25657.1 vs. NCBI_GenBank
Match: gi|301111330|ref|XP_002904744.1| (paired amphipathic helix protein Sin3, putative [Phytophthora infestans T30-4] >gi|262095074|gb|EEY53126.1| paired amphipathic helix protein Sin3, putative [Phytophthora infestans T30-4])

HSP 1 Score: 84.7297 bits (208), Expect = 2.407e-17
Identity = 37/48 (77.08%), Postives = 44/48 (91.67%), Query Frame = 0
Query:    4 VLELLRKNPAGAIPVILRRLKQKDLEWRKARQDLNKGWKDVLEKNYHK 51
            +LELLRK PAGAIP+IL+RLKQKD EWR+AR+DLN+ WK+V EKNYHK
Sbjct:  840 ILELLRKYPAGAIPIILKRLKQKDEEWRRAREDLNRQWKEVNEKNYHK 887          
BLAST of EWM25657.1 vs. NCBI_GenBank
Match: gi|970659897|gb|KUF97496.1| (hypothetical protein AM588_10009571 [Phytophthora nicotianae])

HSP 1 Score: 84.7297 bits (208), Expect = 2.568e-17
Identity = 37/48 (77.08%), Postives = 44/48 (91.67%), Query Frame = 0
Query:    4 VLELLRKNPAGAIPVILRRLKQKDLEWRKARQDLNKGWKDVLEKNYHK 51
            +LELLRK PAGAIP+IL+RLKQKD EWR+AR+DLN+ WK+V EKNYHK
Sbjct:  595 ILELLRKYPAGAIPIILKRLKQKDEEWRRAREDLNRQWKEVNEKNYHK 642          
BLAST of EWM25657.1 vs. NCBI_GenBank
Match: gi|1214707914|gb|OWZ19254.1| (Paired amphipathic helix protein Sin3 [Phytophthora megakarya])

HSP 1 Score: 84.3445 bits (207), Expect = 3.101e-17
Identity = 38/48 (79.17%), Postives = 44/48 (91.67%), Query Frame = 0
Query:    4 VLELLRKNPAGAIPVILRRLKQKDLEWRKARQDLNKGWKDVLEKNYHK 51
            +LELLRK PAGAIPVIL+RLKQKD EWR+AR+DLN+ WK+V EKNYHK
Sbjct:  820 ILELLRKFPAGAIPVILQRLKQKDEEWRRAREDLNRQWKEVNEKNYHK 867          
BLAST of EWM25657.1 vs. NCBI_GenBank
Match: gi|953489519|emb|CEG46885.1| (paired amphipathic helix protein [Plasmopara halstedii])

HSP 1 Score: 83.9593 bits (206), Expect = 5.194e-17
Identity = 37/48 (77.08%), Postives = 44/48 (91.67%), Query Frame = 0
Query:    4 VLELLRKNPAGAIPVILRRLKQKDLEWRKARQDLNKGWKDVLEKNYHK 51
            +LELLRK PAGAIP+IL+RLKQKD EWR+AR+DLN+ WK+V EKNYHK
Sbjct:  835 ILELLRKFPAGAIPIILKRLKQKDEEWRRAREDLNRQWKEVNEKNYHK 882          
The following BLAST results are available for this feature:
BLAST of EWM25657.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585107488|gb|EWM25657.1|3.272e-56100.00paired amphipathic helix protein sin3 [Nannochloro... [more]
gi|1173929891|gb|OQR83049.1|9.750e-1983.33paired amphipathic helix protein Sin3 [Achlya hypo... [more]
gi|669152040|ref|XP_008611582.1|3.847e-1883.33hypothetical protein SDRG_07523 [Saprolegnia dicli... [more]
gi|813185405|ref|XP_012206874.1|4.078e-1883.33hypothetical protein SPRG_22307 [Saprolegnia paras... [more]
gi|1173948624|gb|OQR96732.1|6.502e-1881.25paired amphipathic helix protein Sin3 [Thraustothe... [more]
gi|673042051|ref|XP_008874986.1|2.011e-1781.25hypothetical protein H310_10388 [Aphanomyces invad... [more]
gi|301111330|ref|XP_002904744.1|2.407e-1777.08paired amphipathic helix protein Sin3, putative [P... [more]
gi|970659897|gb|KUF97496.1|2.568e-1777.08hypothetical protein AM588_10009571 [Phytophthora ... [more]
gi|1214707914|gb|OWZ19254.1|3.101e-1779.17Paired amphipathic helix protein Sin3 [Phytophthor... [more]
gi|953489519|emb|CEG46885.1|5.194e-1777.08paired amphipathic helix protein [Plasmopara halst... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5028rna5028Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications