EWM25664.1, cds5010 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM25664.1 vs. NCBI_GenBank
Match: gi|585107499|gb|EWM25664.1| (ring u-box domain-containing protein, partial [Nannochloropsis gaditana]) HSP 1 Score: 373.244 bits (957), Expect = 1.763e-130 Identity = 194/194 (100.00%), Postives = 194/194 (100.00%), Query Frame = 0 Query: 1 ARTLSAFHHLLPLLQPFRLPLLRAGQAALLLALWLLLLPLLVGLLFELAVILPARVPVDETPLIPLYEAWVLGLVFLKISVRCLLLGLLGNDHPWKRKFERVGANGFWNLDFTWTLRHVVLPVLCLFLSLLLPPYFFSKSVERLGYLYLRHVVLPAPSPPPFPASSPASSFASWLLPGMRKNRSGMPMSASSFT 194 ARTLSAFHHLLPLLQPFRLPLLRAGQAALLLALWLLLLPLLVGLLFELAVILPARVPVDETPLIPLYEAWVLGLVFLKISVRCLLLGLLGNDHPWKRKFERVGANGFWNLDFTWTLRHVVLPVLCLFLSLLLPPYFFSKSVERLGYLYLRHVVLPAPSPPPFPASSPASSFASWLLPGMRKNRSGMPMSASSFT Sbjct: 1 ARTLSAFHHLLPLLQPFRLPLLRAGQAALLLALWLLLLPLLVGLLFELAVILPARVPVDETPLIPLYEAWVLGLVFLKISVRCLLLGLLGNDHPWKRKFERVGANGFWNLDFTWTLRHVVLPVLCLFLSLLLPPYFFSKSVERLGYLYLRHVVLPAPSPPPFPASSPASSFASWLLPGMRKNRSGMPMSASSFT 194
BLAST of EWM25664.1 vs. NCBI_GenBank
Match: gi|1134784724|gb|APX52968.1| (E3 ubiquitin-protein ligase MARCH6, partial [Avicennia marina subsp. marina]) HSP 1 Score: 108.997 bits (271), Expect = 9.725e-27 Identity = 57/118 (48.31%), Postives = 81/118 (68.64%), Query Frame = 0 Query: 26 QAALLLALWLLLLPLLVGLLFELAVILPARVPVDETPLIPLYEAWVLGLVFLKISVRCLLLG--LLGNDHPWKRKFERVGANGFWNLDFTWTLRHVVLPVLCLFLSLLLPPYFFSKSV 141 ++++LL++WL ++P+L+GLLFEL VI+P RVPVDE+P+ LY+ W LGL+FLKI R ++L +L D W+ KFERV +GF L W LR +VLP+ L+ L PY S+ V Sbjct: 21 KSSVLLSIWLFVVPVLIGLLFELLVIVPMRVPVDESPVFLLYQDWALGLIFLKIWTRLVMLDHMMLLVDESWRVKFERVREDGFSRLQVLWVLREIVLPITMKLLTALCVPYVLSRGV 138
BLAST of EWM25664.1 vs. NCBI_GenBank
Match: gi|757951955|gb|AJO53734.1| (E3 ubiquitin-protein ligase MARCH6, partial [Avicennia marina subsp. australasica]) HSP 1 Score: 107.457 bits (267), Expect = 1.686e-26 Identity = 56/118 (47.46%), Postives = 80/118 (67.80%), Query Frame = 0 Query: 26 QAALLLALWLLLLPLLVGLLFELAVILPARVPVDETPLIPLYEAWVLGLVFLKISVRCLLLGLLG--NDHPWKRKFERVGANGFWNLDFTWTLRHVVLPVLCLFLSLLLPPYFFSKSV 141 ++++LL++WL ++P+L+GLLFEL VI+P RVPVDE+P+ LY+ W LGL+FLKI R ++L + D W+ KFERV +GF L W LR +VLP+ L+ L PY S+ V Sbjct: 6 KSSVLLSIWLFVVPVLIGLLFELLVIVPMRVPVDESPVFLLYQDWALGLIFLKIWTRLVMLDHMMPLVDESWRVKFERVREDGFSRLQVLWVLREIVLPITMKLLTALCVPYVLSRGV 123
BLAST of EWM25664.1 vs. NCBI_GenBank
Match: gi|757951951|gb|AJO53732.1| (E3 ubiquitin-protein ligase MARCH6, partial [Avicennia marina subsp. eucalyptifolia]) HSP 1 Score: 107.457 bits (267), Expect = 1.779e-26 Identity = 56/118 (47.46%), Postives = 80/118 (67.80%), Query Frame = 0 Query: 26 QAALLLALWLLLLPLLVGLLFELAVILPARVPVDETPLIPLYEAWVLGLVFLKISVRCLLLGLLG--NDHPWKRKFERVGANGFWNLDFTWTLRHVVLPVLCLFLSLLLPPYFFSKSV 141 ++++LL++WL ++P+L+GLLFEL VI+P RVPVDE+P+ LY+ W LGL+FLKI R ++L + D W+ KFERV +GF L W LR +VLP+ L+ L PY S+ V Sbjct: 6 KSSVLLSIWLFVVPVLIGLLFELLVIVPMRVPVDESPVFLLYQDWALGLIFLKIWTRLVMLDHMMPLVDESWRVKFERVREDGFSRLQVLWVLREIVLPITMKLLTALCVPYVLSRGV 123
BLAST of EWM25664.1 vs. NCBI_GenBank
Match: gi|757951953|gb|AJO53733.1| (E3 ubiquitin-protein ligase MARCH6, partial [Avicennia marina subsp. marina]) HSP 1 Score: 107.457 bits (267), Expect = 1.820e-26 Identity = 56/118 (47.46%), Postives = 80/118 (67.80%), Query Frame = 0 Query: 26 QAALLLALWLLLLPLLVGLLFELAVILPARVPVDETPLIPLYEAWVLGLVFLKISVRCLLLGLLG--NDHPWKRKFERVGANGFWNLDFTWTLRHVVLPVLCLFLSLLLPPYFFSKSV 141 ++++LL++WL ++P+L+GLLFEL VI+P RVPVDE+P+ LY+ W LGL+FLKI R ++L + D W+ KFERV +GF L W LR +VLP+ L+ L PY S+ V Sbjct: 6 KSSVLLSIWLFVVPVLIGLLFELLVIVPMRVPVDESPVFLLYQDWALGLIFLKIWTRLVMLDHMMPLVDESWRVKFERVREDGFSRLQVLWVLREIVLPITMKLLTALCVPYVLSRGV 123
BLAST of EWM25664.1 vs. NCBI_GenBank
Match: gi|672144015|ref|XP_008795897.1| (PREDICTED: probable E3 ubiquitin ligase SUD1 [Phoenix dactylifera]) HSP 1 Score: 115.546 bits (288), Expect = 2.372e-26 Identity = 56/118 (47.46%), Postives = 82/118 (69.49%), Query Frame = 0 Query: 26 QAALLLALWLLLLPLLVGLLFELAVILPARVPVDETPLIPLYEAWVLGLVFLKISVRCLLLGLLG--NDHPWKRKFERVGANGFWNLDFTWTLRHVVLPVLCLFLSLLLPPYFFSKSV 141 + + LL++W+ ++P+L+GLLFEL VI+P RVPVDE+P+ LY+ W LGL+FLKI R ++L + D W+RKFERV +GF+ L W LR +V+P++ L+ L PY FSK + Sbjct: 883 KISALLSIWIFVIPVLIGLLFELLVIVPMRVPVDESPVFLLYQDWALGLIFLKIWTRLVMLEQMAPLVDESWRRKFERVREDGFFRLRGLWVLREIVIPIVSKLLTALCVPYVFSKGI 1000
BLAST of EWM25664.1 vs. NCBI_GenBank
Match: gi|1035946283|gb|OAY70678.1| (putative E3 ubiquitin ligase SUD1 [Ananas comosus]) HSP 1 Score: 115.546 bits (288), Expect = 2.470e-26 Identity = 55/118 (46.61%), Postives = 82/118 (69.49%), Query Frame = 0 Query: 26 QAALLLALWLLLLPLLVGLLFELAVILPARVPVDETPLIPLYEAWVLGLVFLKISVRCLLLGLLG--NDHPWKRKFERVGANGFWNLDFTWTLRHVVLPVLCLFLSLLLPPYFFSKSV 141 +++ LL++W+ ++P+L+GLLFEL VI+P RVPVDE+P+ LY+ W LGL+FLKI R ++L + D W+RKFERV +GF L W R +V+P++ L+LL PY F+K + Sbjct: 821 KSSALLSIWIFVIPVLIGLLFELLVIVPIRVPVDESPVFLLYQDWALGLIFLKIWTRLVMLDQMAPLVDESWRRKFERVREDGFSRLRGLWVFREIVIPIITKLLTLLCVPYVFAKGI 938
BLAST of EWM25664.1 vs. NCBI_GenBank
Match: gi|1147597796|ref|XP_020102815.1| (probable E3 ubiquitin ligase SUD1 [Ananas comosus]) HSP 1 Score: 115.161 bits (287), Expect = 3.138e-26 Identity = 55/118 (46.61%), Postives = 82/118 (69.49%), Query Frame = 0 Query: 26 QAALLLALWLLLLPLLVGLLFELAVILPARVPVDETPLIPLYEAWVLGLVFLKISVRCLLLGLLG--NDHPWKRKFERVGANGFWNLDFTWTLRHVVLPVLCLFLSLLLPPYFFSKSV 141 +++ LL++W+ ++P+L+GLLFEL VI+P RVPVDE+P+ LY+ W LGL+FLKI R ++L + D W+RKFERV +GF L W R +V+P++ L+LL PY F+K + Sbjct: 884 KSSALLSIWIFVIPVLIGLLFELLVIVPIRVPVDESPVFLLYQDWALGLIFLKIWTRLVMLDQMAPLVDESWRRKFERVREDGFSRLRGLWVFREIVIPIITKLLTLLCVPYVFAKGI 1001
BLAST of EWM25664.1 vs. NCBI_GenBank
Match: gi|544636758|gb|AGW24427.1| (E3 ubiquitin-protein ligase MARCH6, partial [Avicennia marina subsp. marina]) HSP 1 Score: 107.071 bits (266), Expect = 5.164e-26 Identity = 56/118 (47.46%), Postives = 80/118 (67.80%), Query Frame = 0 Query: 26 QAALLLALWLLLLPLLVGLLFELAVILPARVPVDETPLIPLYEAWVLGLVFLKISVRCLLLGLLG--NDHPWKRKFERVGANGFWNLDFTWTLRHVVLPVLCLFLSLLLPPYFFSKSV 141 ++++LL++WL ++P+L+GLLFEL VI+P RVPVDE+P+ LY+ W LGL+FLKI R ++L + D W+ KFERV +GF L W LR +VLP+ L+ L PY S+ V Sbjct: 21 KSSVLLSIWLFVVPVLIGLLFELLVIVPMRVPVDESPVFLLYQDWALGLIFLKIWTRLVMLDHMMPLVDESWRVKFERVREDGFSRLQVLWVLREIVLPITMKLLTALCVPYVLSRGV 138
BLAST of EWM25664.1 vs. NCBI_GenBank
Match: gi|757951949|gb|AJO53731.1| (E3 ubiquitin-protein ligase MARCH6, partial [Avicennia germinans]) HSP 1 Score: 105.916 bits (263), Expect = 5.594e-26 Identity = 54/118 (45.76%), Postives = 80/118 (67.80%), Query Frame = 0 Query: 26 QAALLLALWLLLLPLLVGLLFELAVILPARVPVDETPLIPLYEAWVLGLVFLKISVRCLLLGLLG--NDHPWKRKFERVGANGFWNLDFTWTLRHVVLPVLCLFLSLLLPPYFFSKSV 141 ++++LL++W+ ++P+L+GLLFEL VI+P RVPVDE+P+ LY+ W LGL+FLKI R ++L + D W+ KFERV +GF L W LR +V P++ L+ L PY S+ V Sbjct: 6 KSSVLLSIWIFIIPVLIGLLFELLVIVPMRVPVDESPVFLLYQDWALGLIFLKIWTRLVMLDHMMPLVDESWRVKFERVREDGFSRLQGLWVLREIVFPIIMKLLTALCVPYVLSRGV 123 The following BLAST results are available for this feature:
BLAST of EWM25664.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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