EWM25680.1, cds4993 (CDS) Nannochloropsis gaditana

Overview
NameEWM25680.1
Unique Namecds4993
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002464.1:909347..909354 +
Alignment locationCM002464.1:909858..909945 +
Alignment locationCM002464.1:910336..910455 +
Alignment locationCM002464.1:910628..910759 +
Alignment locationCM002464.1:910965..911198 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM25680.1
Producteukaryotic translation initiation factor 3 subunit
Orig transcript idgnl|cribi|Naga_101640g1.5523.mrna
GeneEIF3c
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:909347..909354 +
CM002464.1supercontigCM002464.1:909858..909945 +
CM002464.1supercontigCM002464.1:910336..910455 +
CM002464.1supercontigCM002464.1:910628..910759 +
CM002464.1supercontigCM002464.1:910965..911198 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0008135translation factor activity, RNA binding
GO:0005515protein binding
GO:0031369translation initiation factor binding
GO:0003743translation initiation factor activity
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
GO:0005852eukaryotic translation initiation factor 3 complex
Vocabulary: Biological Process
TermDefinition
GO:0006413translational initiation
Vocabulary: INTERPRO
TermDefinition
IPR008905EIF3C_N_dom
Homology
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BLAST of EWM25680.1 vs. NCBI_GenBank
Match: gi|585107527|gb|EWM25680.1| (eukaryotic translation initiation factor 3 subunit [Nannochloropsis gaditana])

HSP 1 Score: 394.045 bits (1011), Expect = 9.209e-139
Identity = 193/193 (100.00%), Postives = 193/193 (100.00%), Query Frame = 0 
Query:    1 MAPALFGTGNYPRFYIKLCVTMEDKLADLREKVKEGTAKKMSPGNERSFKRMKNKLNKTSKAHEAEIALYKQDPVAYMGDEEAMDGTSATSSSSSDESSSESSGSDSDSEDSSSEERFLYGFLLLFLLCFLHAGAAKTGEQGADGTREGGREGGRDGGGLKDDVMTHNSSFPRAASYLVALVIEWRDERGGVR 193
            MAPALFGTGNYPRFYIKLCVTMEDKLADLREKVKEGTAKKMSPGNERSFKRMKNKLNKTSKAHEAEIALYKQDPVAYMGDEEAMDGTSATSSSSSDESSSESSGSDSDSEDSSSEERFLYGFLLLFLLCFLHAGAAKTGEQGADGTREGGREGGRDGGGLKDDVMTHNSSFPRAASYLVALVIEWRDERGGVR
Sbjct:    1 MAPALFGTGNYPRFYIKLCVTMEDKLADLREKVKEGTAKKMSPGNERSFKRMKNKLNKTSKAHEAEIALYKQDPVAYMGDEEAMDGTSATSSSSSDESSSESSGSDSDSEDSSSEERFLYGFLLLFLLCFLHAGAAKTGEQGADGTREGGREGGRDGGGLKDDVMTHNSSFPRAASYLVALVIEWRDERGGVR 193
The following BLAST results are available for this feature:
BLAST of EWM25680.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585107527|gb|EWM25680.1|9.209e-139100.00eukaryotic translation initiation factor 3 subunit... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5005rna5005Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications