|
|
Properties
| Property Name | Value |
|---|
| Product | eukaryotic translation initiation factor 3 subunit |
| Orig transcript id | gnl|cribi|Naga_101640g1.5523.mrna |
| Orig protein id | gnl|cribi|Naga_101640g1.5523 |
| Gene | EIF3c |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002464.1 | supercontig | CM002464.1:909347..911198 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna5005 ID=rna5005|Name=rna5005|organism=Nannochloropsis gaditana|type=mRNA|length=1692bp
ATCACAGGGGGCACTCATTTGGCCGGAAGGGCGTCTGCTTCTTTTTGTGC
AGTCTTGTCTTCCTAAGTACGTGTGTTGTTCCCCGACAAGTGGGCTACGA
CGCTCTCAAGAGGTTAGAGTGGGATTCGGTGGGAGCCGGCGCAAGGTTGT
CTCCTGACGCTCTGACCGCTGTCTTCTTCCGCTGGCCATCACGTTCCTGG
TGGGCCATTCACAGTATTAGGTGGACCGTACGTTCCAACGGCTGAAAGCG
CCGGAGCCCAATTTCTTCTGGCGTGTTCACCGAAGACAGAGCGGCAGGCA
GTAGCATCACAACTCTGCACCTCTCCCTCGTCGCTGTAAAATTGAAGCCG
CCAGCCCCGCAGGAGCAAAGAGACGGCGACCACGATGGCCGCAGCGTACT
TGGACGGCAGAAGAAGCCGGAGACGTCCAGGCTTGCACGGTCTACCACCT
GCTGCGAGAAAAATAACCCTGCGGGTCCCGCTGACCCTTGCCCTCCTCCT
CTTGTTGGTATTCCCGCAGAACATTAGCGGCTTTGTTTTCCCTTCTCCCG
GGAAACGTCTGCATGCATCTTTCTTTCCCTCCTCATCCTCCTTCTTGGGC
GGTGCGCCCGGACTTTTCACTCTTAACGCGACGCCACCGCCGTCGTCCGA
CCCGAAGCGACCCTCTCCTTCCTTTTCCTCCTCCTCCTCCCCCTCTTCCT
CCCCTTCCTACCAAGACTTGAACCAGCTCCTCCTCGAGGTGGAAGCCATG
CAAAACCGGGCATTTCGGGAGCTGGGTGTGCTGGGCCGACCCCTCCCGCC
CGTGGTGTTGGAAAAACTCAAGGTGGATGGACGGATCGGAACGGCGCCCG
AACGGGGCGCCCTTCAGAAGGCGGGGGACGTCGGACCAGGGGGCAGGGAG
GGACAAAAAGCCATGCTGGAGGCGTTGCGACTGCGGGCCATGGCCAAAAA
ACTCCGGGCGGAGGCGGATTTGGCGGAGGTGGAACTGGCGAACGAGAAAG
TGAACGGGACGATGCGGAACCTGTTGGCGGGTGTGGACGTGGGCCTAGCT
CTGTTGAACGAGGCCAGGGGAGGGATGGCGGGCGGGAGGGAAGAAGGGAG
GGAGGGAGTGGAGGTAGCCATGGAGGTGGCGCGTCAGGCCTTCGCGAGGG
TGCTGGGGTTGGAAGTGCGGGCGCCGCCGCCCTTGTCGACCGTGGAGAGG
AGGGCTACGGAAGTAGATCATGATGAGGAGGACGGGATGGACGGAGGGAG
GTCGGAGGGGGGCATGCGGAGGCCAAGTTGGGTGCGGGGAGAAGACATGT
GGGACGAGGACATGCCGGATCTGAGCATCGGGGGGAGCGAAAGGGGGAGG
GGGAAGAGGAGGGAGGCGGAAGGGGAGAGGGACGTGGAGGACTCGGCCTT
GATGGGGCGGGGCGGGGAGAAAGGGAGGGAGGGAGGGAGAACGGGAGGGA
GGGAGGACGTGTTGTCAGCCCGGGTACAGGACGACTTCATCCGGGAGGTG
GAACGGGCGGCGGCCAGGCAGGGACAGAGGGAGGGAGCGGAGGAAGGGGG
GGGGGGCGATATAAGGACCTCCTCCCTCCCCGAGGGAAGGGGTTCGACTC
CCGGTGCTGCGGGAGGCGAAGGGGCTCCCAATGGTACAGGCGCGCCACCG
TCCTTGTCGGCGGGGGGAGAGGAGGAGGAGGAGACATACTAC back to topprotein sequence of rna5005 >rna5005-protein ID=rna5005-protein|Name=rna5005|organism=Nannochloropsis gaditana|type=polypeptide|length=193bp
MAPALFGTGNYPRFYIKLCVTMEDKLADLREKVKEGTAKKMSPGNERSFK
RMKNKLNKTSKAHEAEIALYKQDPVAYMGDEEAMDGTSATSSSSSDESSS
ESSGSDSDSEDSSSEERFLYGFLLLFLLCFLHAGAAKTGEQGADGTREGG
REGGRDGGGLKDDVMTHNSSFPRAASYLVALVIEWRDERGGVR back to topmRNA from alignment at CM002464.1:909347..911198+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna5005 ID=rna5005|Name=rna5005|organism=Nannochloropsis gaditana|type=mRNA|length=1852bp|location=Sequence derived from alignment at CM002464.1:909347..911198+ (Nannochloropsis gaditana)
ATGGCACCGTGAGCAAGAAAGACAGGAAGGCCGTCCGGAGATTgagaggc
cgggagggaggaaaggagggaggaagggaagggcaacagcaaaaaaaaag
aagttTATCTCAACTGCCTCGGCCTACTCCCCTGCCCTGTTCAGGTGGGC
AAGATCCAGAACGCCCTCAAAATCAACGACTGGACTTTAGTCGAGAACGA
GTTCGACGACTTGAACAAGCGGGTGGAGAGCAAACGGTCGgtctcctgcc
cgccctccctccctccctccctccctccctttgtctTTGTCtcacccttc
tttcctccctgcatcCCGCCCGCGTCCCGTTTGTCCGGCGTGTCCGTTCC
TATGGCCTTCCAAGatttcgcgccaaaatggCCTCTTAAggtttcgcgcc
aaaattgCCTTTTCAGGTCTCGCGGAccgtcttcctttccttcccgtcgt
TCCTGCCACAGCACCTGAtaaccttcctccttgcttccctccctcccttt
ccccctctcagcGCCCTCTTTGGTACTGGCAACTATCCCCGGTTTTACAT
CAAGCTGTGCGTGACCATGGAGGACAAGCTGGCAGACCTCCGGGagaagg
taggaagggggggagggagggagggagagatggagggaggaagggcggga
gaccGACCGTTTGCGGGAGGGTTAAGGGTTAGGGATCGCTTTGAGTGTCT
ACATGTGGATgacggtgaggaggaaggaggagggtgtgcTGAGCCGTGAA
GGAGCGGTTCATGACATAGGACAAGGCGTCTTTGCcctgttcccctcccc
tggtcctcgtcccctccctcccttcgtccctccgttcccccctcccgccc
tccctctcgacctGAACGGGACGGGACGATTTTAAAATGTCTTCCAGCAA
GCAAGCTTTTTTGGCAGACGCATGGTAtcaacgccctccctctctccgtc
cctccctccctttctccctcccttcttccctccctttagGTCAAGGAAGG
CACGGCCAAGAAGATGTCACCGGGAAACGAACGCTCGTTCAAACGCATGA
AGAACAAACTCAACAAAACATCCAAGGCCCACGAAGCCGAGATTGCGCTC
TACAAGCAGGTCGGGagatagggaggaaggaagggagggagggagggagg
ggggagggagggagtcagGAAAAAGGGCTACCGGGATACAGGCCGCGTCT
AATTGGCGCTCCTCGCCGCGTCtcatttttcccctcctccctcactccct
cccttcctttcctcccttcctcgcttggCAGGACCCGGTCGCCTACATGG
GAGACGAAGAGGCGATGGATGGAACCAGCgccacaagcagcagcagcagc
gacgaaAGCAGCAGCGAGAGTAGCGGGAGTGACAGCGACTCGGAAGATTC
TTCCTCCGAAGAGGTGTGTGataggacgggagggagggggggaggaggaa
agggagacagGATTTCTCTCTGGGTGATAGCGCGGCAGCGGGCGGTGGGA
CCTTTGTTTCGTGTGATTGGATTGGGGCGTCAgcgatgccccccccccac
atGCATTGATGTATACACACACGGCACACGCCTTTCGCACAGAGCGATTC
GGACAGTGAGAGCGACAGCGATTCCTCtacggcttcctcctcctcttcct
cctctgcttcctccacgccggtGCAGCGAAAACGGGCGAGCAAGGTGCTG
atgggacgagggagggagggagggagggagggagggacgggggaggccTC
AAGGATGACGTTATGACACACAATTCCTCGTTTCCGAGAGCCGCTTCTTA
CCTCGTGGCTCTAGTGATAGAGTGGAGAGATGAAAGGGGTGGCGTGAGAT
AA back to topCoding sequence (CDS) from alignment at CM002464.1:909347..911198+ >rna5005 ID=rna5005|Name=rna5005|organism=Nannochloropsis gaditana|type=CDS|length=2910bp|location=Sequence derived from alignment at CM002464.1:909347..911198+ (Nannochloropsis gaditana)
ATGGCACCcGCCCTCTTTGGTACTGGCAACTATCCCCGGTTTTACATCAA
GCTGTGCGTGACCATGGAGGACAAGCTGGCAGACCTCCGGGagaagGTCA
AGGAAGGCACGGCCAAGAAGATGTCACCGGGAAACGAACGCTCGTTCAAA
CGCATGAAGAACAAACTCAACAAAACATCCAAGGCCCACGAAGCCGAGAT
TGCGCTCTACAAGCAGGACCCGGTCGCCTACATGGGAGACGAAGAGGCGA
TGGATGGAACCAGCgccacaagcagcagcagcagcgacgaaAGCAGCAGC
GAGAGTAGCGGGAGTGACAGCGACTCGGAAGATTCTTCCTCCGAAGAGCG
ATTCCTCtacggcttcctcctcctcttcctcctctgcttcctccacgccg
gtGCAGCGAAAACGGGCGAGCAAGGTGCTGatgggacgagggagggaggg
agggagggagggagggacgggggaggccTCAAGGATGACGTTATGACACA
CAATTCCTCGTTTCCGAGAGCCGCTTCTTACCTCGTGGCTCTAGTGATAG
AGTGGAGAGATGAAAGGGGTGGCGTGAGATAAATGGCACCcGCCCTCTTT
GGTACTGGCAACTATCCCCGGTTTTACATCAAGCTGTGCGTGACCATGGA
GGACAAGCTGGCAGACCTCCGGGagaagGTCAAGGAAGGCACGGCCAAGA
AGATGTCACCGGGAAACGAACGCTCGTTCAAACGCATGAAGAACAAACTC
AACAAAACATCCAAGGCCCACGAAGCCGAGATTGCGCTCTACAAGCAGGA
CCCGGTCGCCTACATGGGAGACGAAGAGGCGATGGATGGAACCAGCgcca
caagcagcagcagcagcgacgaaAGCAGCAGCGAGAGTAGCGGGAGTGAC
AGCGACTCGGAAGATTCTTCCTCCGAAGAGCGATTCCTCtacggcttcct
cctcctcttcctcctctgcttcctccacgccggtGCAGCGAAAACGGGCG
AGCAAGGTGCTGatgggacgagggagggagggagggagggagggagggac
gggggaggccTCAAGGATGACGTTATGACACACAATTCCTCGTTTCCGAG
AGCCGCTTCTTACCTCGTGGCTCTAGTGATAGAGTGGAGAGATGAAAGGG
GTGGCGTGAGATAAATGGCACCcGCCCTCTTTGGTACTGGCAACTATCCC
CGGTTTTACATCAAGCTGTGCGTGACCATGGAGGACAAGCTGGCAGACCT
CCGGGagaagGTCAAGGAAGGCACGGCCAAGAAGATGTCACCGGGAAACG
AACGCTCGTTCAAACGCATGAAGAACAAACTCAACAAAACATCCAAGGCC
CACGAAGCCGAGATTGCGCTCTACAAGCAGGACCCGGTCGCCTACATGGG
AGACGAAGAGGCGATGGATGGAACCAGCgccacaagcagcagcagcagcg
acgaaAGCAGCAGCGAGAGTAGCGGGAGTGACAGCGACTCGGAAGATTCT
TCCTCCGAAGAGCGATTCCTCtacggcttcctcctcctcttcctcctctg
cttcctccacgccggtGCAGCGAAAACGGGCGAGCAAGGTGCTGatggga
cgagggagggagggagggagggagggagggacgggggaggccTCAAGGAT
GACGTTATGACACACAATTCCTCGTTTCCGAGAGCCGCTTCTTACCTCGT
GGCTCTAGTGATAGAGTGGAGAGATGAAAGGGGTGGCGTGAGATAAATGG
CACCcGCCCTCTTTGGTACTGGCAACTATCCCCGGTTTTACATCAAGCTG
TGCGTGACCATGGAGGACAAGCTGGCAGACCTCCGGGagaagGTCAAGGA
AGGCACGGCCAAGAAGATGTCACCGGGAAACGAACGCTCGTTCAAACGCA
TGAAGAACAAACTCAACAAAACATCCAAGGCCCACGAAGCCGAGATTGCG
CTCTACAAGCAGGACCCGGTCGCCTACATGGGAGACGAAGAGGCGATGGA
TGGAACCAGCgccacaagcagcagcagcagcgacgaaAGCAGCAGCGAGA
GTAGCGGGAGTGACAGCGACTCGGAAGATTCTTCCTCCGAAGAGCGATTC
CTCtacggcttcctcctcctcttcctcctctgcttcctccacgccggtGC
AGCGAAAACGGGCGAGCAAGGTGCTGatgggacgagggagggagggaggg
agggagggagggacgggggaggccTCAAGGATGACGTTATGACACACAAT
TCCTCGTTTCCGAGAGCCGCTTCTTACCTCGTGGCTCTAGTGATAGAGTG
GAGAGATGAAAGGGGTGGCGTGAGATAAATGGCACCcGCCCTCTTTGGTA
CTGGCAACTATCCCCGGTTTTACATCAAGCTGTGCGTGACCATGGAGGAC
AAGCTGGCAGACCTCCGGGagaagGTCAAGGAAGGCACGGCCAAGAAGAT
GTCACCGGGAAACGAACGCTCGTTCAAACGCATGAAGAACAAACTCAACA
AAACATCCAAGGCCCACGAAGCCGAGATTGCGCTCTACAAGCAGGACCCG
GTCGCCTACATGGGAGACGAAGAGGCGATGGATGGAACCAGCgccacaag
cagcagcagcagcgacgaaAGCAGCAGCGAGAGTAGCGGGAGTGACAGCG
ACTCGGAAGATTCTTCCTCCGAAGAGCGATTCCTCtacggcttcctcctc
ctcttcctcctctgcttcctccacgccggtGCAGCGAAAACGGGCGAGCA
AGGTGCTGatgggacgagggagggagggagggagggagggagggacgggg
gaggccTCAAGGATGACGTTATGACACACAATTCCTCGTTTCCGAGAGCC
GCTTCTTACCTCGTGGCTCTAGTGATAGAGTGGAGAGATGAAAGGGGTGG
CGTGAGATAA back to top
|