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Properties
| Property Name | Value |
|---|
| Product | hypothetical protein |
| Orig transcript id | gnl|cribi|Naga_101294g1.1195.mrna |
| Orig protein id | gnl|cribi|Naga_101294g1.1195 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002464.1 | supercontig | CM002464.1:906266..907957 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna5004 ID=rna5004|Name=rna5004|organism=Nannochloropsis gaditana|type=mRNA|length=5338bp
ATGAGCCTTGGCGGTGCCGAGAGTAACAGGAGCAATAGGGAGAACAGTGT
GCGAAGCCGGAGGGAGGGCGCGTCCCGGGGCAGGAGCCCCACGCCGGTCC
CGATTTGGAGTGAAGACGCCCTGGAAAAGGCTCCAGTGGACGAGGAGGAG
AAGGACCTGTCAGAGCCTTTGCCGCCGCGGGAGGAGGGAACGCCTTACAA
GGGACGGAAGGACGGGGCCACGACCAGGGGGCGAAGGAGGGTGGATACAA
GTGGGGCACAGGAGGAAGGGGGGGAGGTCGGGGTCGTCATTCAGTCGCTG
CATGCCCTGGCCTTGGGCGCAGATAGCAGTGAGAGCGCTCATAGTTGTAC
GGGGAGGGAAAGGGGCGACGGCAGCAGCAGTACCCGTACCCTTGGGGATG
CCTGTGACGAGTCTGGCCGCAGGAGCAAGGACCCTTTCCGCGAGAGGGAC
GTCGAGACTCACCCTGAAATCAGCACTGGTCTGGGCGACAGCCGGGATGG
CGCGTCATGGAACGCACGAAGCTCGGTCGTCCACGCAGAGCCGAAAATCC
CCGAAGGCATCTTTCACGTAAAGAGCGCCAGTCCCCGTCGGTACCACAAT
GCGGGTTTACCTCAAGGCCAAGATGACGACAGCCAGCCGGTTGGAGCGCG
CTTGGAGACGCGCGGGACAGGGCCGTGGGACAGAGAAGGAGACATGGCTT
GGGGGACCACACCGGCGGCCGTGGCGATCAGGGTTCGCCCCACAAAGGCC
GAAGCAAGCGAGGGGGAACAGGACAGTCTGATAAGCTGGGGGGGGCTCTC
CCTCCTTTCCGATAGGGCTGACGACGCGCCTGGCAGTGACGGCAAGGAGT
CCTCCTTCCTCCTGCACACCCGTCGCAGCATGGAGACTACGGCCAGCACC
GCGTCCTACCCCGTTATGGGCAGAAACATGGCTCAGGCGCAGCCGATGTC
CCCCTCTGAAGTGGCCGGGAGCGACAGGGTGCGGAGGAGCGAGGTATCCC
CCGTCTCGGTCATTCCGTACACGAGCAGGAACCTCGGGAACGGTTCTAGA
AAAGGGTCTGTGTCTCCCTTACCCACCGCCCTTTCCCCCATGGAGAGGTG
GGAGGAGGGCGGGAGGGAGGACGGGGCGCTGTGGCTGGCCTCGGTCCGCT
TGAGCTCCTCCGTGCCGCATTCCTCCCTGCATCCGCTGCAATACCCGGGC
GATCCTCACAGCCAGGGCCACAGCCACGGCCCCCACACTTTCGAAACCCC
CATGGGCGGGAAGCGTCGGGACTGGGGAGAATCGACCCGCGCCAGCTCTG
CCTCCATCGAGCGCTTGACCCTGCGTTTCCAATCCTCCGTGGCGGAGGGA
GGTGATCAAGGCGGGGGGGAGGAAGGGTGCATCTCGGCCTTGCCGTCTCA
CTTGCGGTACGGGATGCATTCCCCTCCCTTGTCCCAGACAACCCCTCCCG
TGCCTGTATTGGAGCCTCCGGAGAAGGTGAGAAGGGGCAGTCGGCGGCTC
TCTTTAGCGCGTCCGGCACGCCCGCTCCATCGAGAGGAAGATGCTTCCCC
GCCCTTGTCGCCCCGGTCGCCTGGGAAGGAGGGCGACAGTGGAGGTGCCG
AAGGAGGAGGGGGGAGGAGGTACCTGGGGCCGGGGGAAGACGACTTAAGG
CCACGCTCCCTCCAGTCGGGGGGTTGCGCTCTGGAAGCGGACGGGATCAG
GGCGCGGGGAAGGAACCAGGGCCTGGATGGAGGGAATGGAGGGACGCACA
GGGGGTCGTTGACGCTCAGTCCTCCCTCCTGGCCGTTTGAGGGCGGTGCC
TGCCAGCGACAGCCGGAGGACGACGCGGGTGAGAAGGAAGACGAAGCCAG
AGCTGCCGCTGCCCTCCGGAAAAAACGCGCCTCCGCGGCCAAAGCCCGCC
GTGTTTCCATGGGGCTGGCGGCTCGCGCCTCTTTGATCAAACAGCACCTG
GAAGCATGGCGCCAAGGCGGCCTACCCTGTCTCGCGCCTTTTCCCGCCGT
GGAAGCAACGGGGGGGCCGACGAAGGAGCGCGAACAGACGGAAGGGACGA
AGATGGACGTCGCTTCTCGACGAGCCCCGCACCAAAGCCGAGCCTCCTTG
TGTTCGGCCTTGGGGGGGTTGAGCCTCCTGGGCGGGGTGGCCAGTCCCTC
CGAGGAGGGAGGAAAGAGCGGGCCGGGAGAGAAGTCCTTGCTCCTGTCCA
CGCCGGCTGTGCACAGGCGGATCAGTGAGGGAAGCAGGGAGGATGAGGAG
GAGGGGGAGGTGGAGGAGACTACCATGCAGGAAGGTGGGTGGGACGAGGG
GCGGGACCACGAACATGGGCTTCGTGAGGCGTGGGCACGTCGAAGCCTCG
CCTCCTTCGCCACCTCCATCCCCGCGTCCGAGCCCCTGTCGGGGAGGGAA
GCGCATGGAGAAGATTCGTTCATGCTTGTCGATGCTCCCCCTGCCCGCAG
TCTCCACCGCACCTCCCTTGTCGAGTCCTCCGACCAGCCCCCCGGTCCTT
TGGTGCACGGTGTGGGCCTCCTGGGCAAGGAGCTCCTTGCGACGTGCCTG
GAGTTCCTGTCCGTCCAAGAATTGAGGGGACGGGAGCGGAGTCTGGGGTC
GGTCTCGAGGACATGGGCCGTCTCCCTCTTGCATGCTGAAGCGCGCATCT
ACTCGAGTTTTGAAAAGAAGGGGAGTAGGAAAGGAGGGGAAAATGGCGAG
AAAAAACAGGCGCCTCGTCACGACGTGGTGGTGGGCTGGGACCACATCGC
TGAGAAATTTCCTTGCGGAAAATTCCTCTCGGAAGGAACCTATAAGACCG
TGTATGAAGTGTGGGCGAAGGACGGTGAACGGGAACGAGGAGGGAGAGGA
GGGCGGGTAGAAGCCTTGTCCGTCATGGACGTGAACGCGATCACCGCGAG
TGGAAACGCCGCCATTCTCGCCCAAGAACTCCGCGCTTCCATTTTGATGT
CGTGGCTGGTGCGACGAGGGATCTGCCCCAACCATGTTGAGACCTATGGT
GTCTTACGGACGCAGCACGCCCCCCGAGAGGCCTGGGAGTGTCCACCGGC
CATCTTTCACCGGTACGTTGTACGAGCAAAGGCCAATGCCCACAAGGGGA
CTGTCGCACAGGGATCGGAGGCATTCTTGAGACACACGGGAGGAAAAGGA
TGGGCGTCACTTGCTTCCTCCACGCACGCTCTGCCGCCGCCACCGGTCTT
TCCCTCCGTCCCGTCGCGATCCACGGTTGCTCAGGGTGATTTGCAACTCA
TTCGTATGGAGCTTTGTCGACATGGCGACCTGGAGAAGTTCTTGCGGGAG
CGGCCCCTCGGTGCCCTGCCCCCTGGCCTCACTCGACTCCTCCTCTTTCA
AATGTGCTTTGCTCTGTACGCGGCGCGGGAGACTTACGCTATGCGTCACT
ATGACCTGAAGCTCCTCAATTTCCTGCTAGCCGATTTCTTGGCTCCTGCC
TCCGTTGCTTCCTCCCTTCCTGCTTCCACCTTCCCCGACAAAGACATGCC
TCTAGGCTCTTCCCGCGTCCTGCAGGAGCGGCAGAGCCATTCAGAGGATC
CGCGCTCCATAATGGAAGACACCTGGCCAGCCGGCTGCGACAAGAGCAAC
GCTCACCGTACGAGCAAGGACAGCCGCTGCCCCGCCCCAAACGTTCCTCA
GAAGACCCCCCCGTGCCCAGGCACCGTAGGCAATCCAGCCACGGGGGCGG
TGGAAGTACGGTACGGGCTCGGCTTGCACGTGTACCGCCTGCGCTTCCCT
CCCTCCCTCCCACTCTGCGTCAAACTCGCCGACTTTGGAACCGCCGACCT
GGCTCCCGAGACCTTTGGCCAACCGGTGGGGCTGGATCAGTTTACCACCT
TGGAAAATACGCCTGTGGATTTCCTTGTCCTGGGCGATGGGGCCAAGCAA
GACTTCGCTGCGGATGCCTTTTCTCTGGGCCTAGCAGTGTGGCACTTGTT
TGTGGGGAGGCAGCCTTACGAGGAGTTGATGAAGGAGGTCCGTTGCCCCC
CCCCCTTGAGGCGGGCGCTGAACAAAGCCTGGCGGGGGAAGGGCTACACG
GTCCTGCGAAAGGTGCTGGAGGCGGGCGAGGACGAGGAGGAGGACGAGGA
GGATTGGACATTGCACCATACTTTCTACCGGTACTTGGTCCTTCTCGGCC
TGCCCTCCGAGGAGGAGCAGCGGGAGAGCACGGGACGGGCCAGAGGCCTG
AATCCAGTTTGGAAGGCTGTAGCCTCGTGTATTGGCCCCCATCCTGTCGG
TCACGGCAAGGAGGATCAGAGTACTGCAGCCCCTATTGCCTTCACGATGA
GCACACGCAAGCGCACCACGCGTGCCTGTGTTGCGGGCACACCCCTGCCT
CCTTCCCTTGCTGCCTCCGACGTGACCACCAAAGAAAGAGTCACGCGCCA
ATACTGGCAAGACCACGCCTCTTTCTCCCTGAGACATGGCTCCCACCCTT
CGGTTCTCCGAGGAAGGGAGCGACTTGCCGCGCTGCCCGGCGCTTTTTCC
CTCCTGCGCGCCCTCCTCGACTACCTCCCCCAGCGCCGGCCCGGCATGTA
CGAAGCCTTGACATCCGAACTATTTGCCTGTCTGCGCGAGCCAGAGGAAA
AGGAGACAGGGCATGACGCCCGGAGCTTTTTGGCCTATTACCGTGGTGAA
AGCTTGCAGGGAGGACGCAGGAATCCCCGGACGGGCATGCCGCTGCAGGT
TGACGTCTGAGGTAGGAATGCCGTCCGCAGGTTTGGAGATCAGAGCTTCG
ATTCCCTTGAGAAAGGCGCACATGGGCCTAGGTCGGGAAGTTCCTGCAAG
GGAGGAGAGGCAGAGAGAGAGGAAAGGAGAGGAAAGTGCAGGCTTTGATT
GATGGATAAGAAAAAGGATAAGAGTCCAGTTTGGCGGGGTAGCCTGAGAA
GAAAAAGGAGGATTATAGTGGGTGATTTGGGGTTGGTGACGGATAGCTCC
GGTGGAGGAGACAATAGACCATAATCATGGCATAATGTGGTGGAAGAAGT
AGGGGAGGCACATCCGAGGGCAACGACGAGGGGGAGGAGGCAGGCAGGAA
GGAGATACTTAGTGCAGAAACGATGTGCACGACACGTGAGACACACAGCG
GGGAGGTGCCGACTTCGACTTCCGCCCAGGGCCTCCTCCATGTACGCCTG
TCCCATGGATGGCTCCCCATCTTTGCTGCATAAATGATATGAACGGAGGT
TGTTTTCGTGCATATTATCCAGCCATTCTTCTACACATTACGTAATTGTG
TATCTTGGTCCTGTGCATACATATTAGCCGGTCAGTGCACTCCCTAAAGC
ATGAAGTAAAAAACTAGGAACCCGTTTTCGAGAAGTTT back to topprotein sequence of rna5004 >rna5004-protein ID=rna5004-protein|Name=rna5004|organism=Nannochloropsis gaditana|type=polypeptide|length=436bp
MAAAYLDGRRSRRRPGLHGLPPAARKITLRVPLTLALLLLLVFPQNISGF
VFPSPGKRLHASFFPSSSSFLGGAPGLFTLNATPPPSSDPKRPSPSFSSS
SSPSSSPSYQDLNQLLLEVEAMQNRAFRELGVLGRPLPPVVLEKLKVDGR
IGTAPERGALQKAGDVGPGGREGQKAMLEALRLRAMAKKLRAEADLAEVE
LANEKVNGTMRNLLAGVDVGLALLNEARGGMAGGREEGREGVEVAMEVAR
QAFARVLGLEVRAPPPLSTVERRATEVDHDEEDGMDGGRSEGGMRRPSWV
RGEDMWDEDMPDLSIGGSERGRGKRREAEGERDVEDSALMGRGGEKGREG
GRTGGREDVLSARVQDDFIREVERAAARQGQREGAEEGGGGDIRTSSLPE
GRGSTPGAAGGEGAPNGTGAPPSLSAGGEEEEETYY back to topmRNA from alignment at CM002464.1:906266..907957- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >rna5004 ID=rna5004|Name=rna5004|organism=Nannochloropsis gaditana|type=mRNA|length=1692bp|location=Sequence derived from alignment at CM002464.1:906266..907957- (Nannochloropsis gaditana)
ATCACAGGGGGCACTCATTTGGCCGGAAGGGCGTCTGCTTCTTTTTGTGC
AGTCTTGTCTTCCTAAGTACGTGTGTTGTTCCCCGACAAGTGGGCTACGA
CGCTCTCAAGAGGTTAGAGTGGGATTCGGTGGGAGCCGGCGCAAGGTTGT
CTCCTGACGCTCTGACCGCTGTCTTCTTCCGCTGGCCATCACGTTCCTGG
TGGGCCATTCACAGTATTAGGTGGACCGTACGTTCCAACGGCTGAAAGCG
CCGGAGCCCAATTTCTTCTGGCGTGTTCACCGAAGACAGAGCGGCAGGCA
GTAGCATCACAACTCTGCACCTCTCCCTCGTCGCTGTAAAATTGAAGCCG
CCAGCCCCGCAGGAGCAAAGAGACGGCGACCACGATGGCCGCAGCGTACT
TGGACGGCAGAAGAAGCCGGAGACGTCCAGGCTTGCACGGTCTACCACCT
GCTGCGAGAAAAATAACCCTGCGGGTCCCGCTGACCCTTGCCCTCCTCCT
CTTGTTGGTATTCCCGCAGAACATTAGCGGCTTTGTTTTCCCTTCTCCCG
GGAAACGTCTGCATGCATCTTTCTTTCCCTCCTCATCCTCCTTCTTGGGC
GGTGCGCCCGGACTTTTCACTCTTAACGCGACGCCACCGCCGTCGTCCGA
CCCGAAGCGACCCTCTCCTTCCTTTTCCTCCTCCTCCTCCCCCTCTTCCT
CCCCTTCCTACCAAGACTTGAACCAGCTCCTCCTCGAGGTGGAAGCCATG
CAAAACCGGGCATTTCGGGAGCTGGGTGTGCTGGGCCGACCCCTCCCGCC
CGTGGTGTTGGAAAAACTCAAGGTGGATGGACGGATCGGAACGGCGCCCG
AACGGGGCGCCCTTCAGAAGGCGGGGGACGTCGGACCAGGGGGCAGGGAG
GGACAAAAAGCCATGCTGGAGGCGTTGCGACTGCGGGCCATGGCCAAAAA
ACTCCGGGCGGAGGCGGATTTGGCGGAGGTGGAACTGGCGAACGAGAAAG
TGAACGGGACGATGCGGAACCTGTTGGCGGGTGTGGACGTGGGCCTAGCT
CTGTTGAACGAGGCCAGGGGAGGGATGGCGGGCGGGAGGGAAGAAGGGAG
GGAGGGAGTGGAGGTAGCCATGGAGGTGGCGCGTCAGGCCTTCGCGAGGG
TGCTGGGGTTGGAAGTGCGGGCGCCGCCGCCCTTGTCGACCGTGGAGAGG
AGGGCTACGGAAGTAGATCATGATGAGGAGGACGGGATGGACGGAGGGAG
GTCGGAGGGGGGCATGCGGAGGCCAAGTTGGGTGCGGGGAGAAGACATGT
GGGACGAGGACATGCCGGATCTGAGCATCGGGGGGAGCGAAAGGGGGAGG
GGGAAGAGGAGGGAGGCGGAAGGGGAGAGGGACGTGGAGGACTCGGCCTT
GATGGGGCGGGGCGGGGAGAAAGGGAGGGAGGGAGGGAGAACGGGAGGGA
GGGAGGACGTGTTGTCAGCCCGGGTACAGGACGACTTCATCCGGGAGGTG
GAACGGGCGGCGGCCAGGCAGGGACAGAGGGAGGGAGCGGAGGAAGGGGG
GGGGGGCGATATAAGGACCTCCTCCCTCCCCGAGGGAAGGGGTTCGACTC
CCGGTGCTGCGGGAGGCGAAGGGGCTCCCAATGGTACAGGCGCGCCACCG
TCCTTGTCGGCGGGGGGAGAGGAGGAGGAGGAGACATACTAC back to topCoding sequence (CDS) from alignment at CM002464.1:906266..907957- >rna5004 ID=rna5004|Name=rna5004|organism=Nannochloropsis gaditana|type=CDS|length=1308bp|location=Sequence derived from alignment at CM002464.1:906266..907957- (Nannochloropsis gaditana)
ATGGCCGCAGCGTACTTGGACGGCAGAAGAAGCCGGAGACGTCCAGGCTT
GCACGGTCTACCACCTGCTGCGAGAAAAATAACCCTGCGGGTCCCGCTGA
CCCTTGCCCTCCTCCTCTTGTTGGTATTCCCGCAGAACATTAGCGGCTTT
GTTTTCCCTTCTCCCGGGAAACGTCTGCATGCATCTTTCTTTCCCTCCTC
ATCCTCCTTCTTGGGCGGTGCGCCCGGACTTTTCACTCTTAACGCGACGC
CACCGCCGTCGTCCGACCCGAAGCGACCCTCTCCTTCCTTTTCCTCCTCC
TCCTCCCCCTCTTCCTCCCCTTCCTACCAAGACTTGAACCAGCTCCTCCT
CGAGGTGGAAGCCATGCAAAACCGGGCATTTCGGGAGCTGGGTGTGCTGG
GCCGACCCCTCCCGCCCGTGGTGTTGGAAAAACTCAAGGTGGATGGACGG
ATCGGAACGGCGCCCGAACGGGGCGCCCTTCAGAAGGCGGGGGACGTCGG
ACCAGGGGGCAGGGAGGGACAAAAAGCCATGCTGGAGGCGTTGCGACTGC
GGGCCATGGCCAAAAAACTCCGGGCGGAGGCGGATTTGGCGGAGGTGGAA
CTGGCGAACGAGAAAGTGAACGGGACGATGCGGAACCTGTTGGCGGGTGT
GGACGTGGGCCTAGCTCTGTTGAACGAGGCCAGGGGAGGGATGGCGGGCG
GGAGGGAAGAAGGGAGGGAGGGAGTGGAGGTAGCCATGGAGGTGGCGCGT
CAGGCCTTCGCGAGGGTGCTGGGGTTGGAAGTGCGGGCGCCGCCGCCCTT
GTCGACCGTGGAGAGGAGGGCTACGGAAGTAGATCATGATGAGGAGGACG
GGATGGACGGAGGGAGGTCGGAGGGGGGCATGCGGAGGCCAAGTTGGGTG
CGGGGAGAAGACATGTGGGACGAGGACATGCCGGATCTGAGCATCGGGGG
GAGCGAAAGGGGGAGGGGGAAGAGGAGGGAGGCGGAAGGGGAGAGGGACG
TGGAGGACTCGGCCTTGATGGGGCGGGGCGGGGAGAAAGGGAGGGAGGGA
GGGAGAACGGGAGGGAGGGAGGACGTGTTGTCAGCCCGGGTACAGGACGA
CTTCATCCGGGAGGTGGAACGGGCGGCGGCCAGGCAGGGACAGAGGGAGG
GAGCGGAGGAAGGGGGGGGGGGCGATATAAGGACCTCCTCCCTCCCCGAG
GGAAGGGGTTCGACTCCCGGTGCTGCGGGAGGCGAAGGGGCTCCCAATGG
TACAGGCGCGCCACCGTCCTTGTCGGCGGGGGGAGAGGAGGAGGAGGAGA
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