EWM25723.1, cds4959 (CDS) Nannochloropsis gaditana

Overview
NameEWM25723.1
Unique Namecds4959
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002464.1:803081..803323 +
Alignment locationCM002464.1:803445..804068 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM25723.1
Productnudix hydrolase
Orig transcript idgnl|cribi|Naga_100154g11.6621.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:803081..803323 +
CM002464.1supercontigCM002464.1:803445..804068 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
Vocabulary: INTERPRO
TermDefinition
IPR020084NUDIX_hydrolase_CS
IPR000086NUDIX_hydrolase_dom
IPR015797NUDIX_hydrolase_dom-like
Homology
BLAST of EWM25723.1 vs. NCBI_GenBank
Match: gi|585107583|gb|EWM25723.1| (nudix hydrolase [Nannochloropsis gaditana])

HSP 1 Score: 594.734 bits (1532), Expect = 0.000e+0
Identity = 288/288 (100.00%), Postives = 288/288 (100.00%), Query Frame = 0
Query:    1 MLEPYCLSALIRSTSRLLGVRGRKSLPCPSYTRYRRPFAKYASSTTGEQDLSGFELRQYGKDDPPRLTCKTCSHILYDNPKIVTGAVVTSRCPQTGDSLFLLCRRAIPPRRGYFNLCAGYMEKGESLAEAAAREAREEAGAQIDIGQILGIFDISHIGQVHIYFKATLSNTDIEPGYESLDARLVRWDEIPWGDLAFPTVSWALMAWEKQAALGGEWGGTPFRNPVLSGYEGSTNVWYRPDKGGLVHDESWMRREGREESVGSAGERQGRGGAGECKKSAQETHERDR 288
            MLEPYCLSALIRSTSRLLGVRGRKSLPCPSYTRYRRPFAKYASSTTGEQDLSGFELRQYGKDDPPRLTCKTCSHILYDNPKIVTGAVVTSRCPQTGDSLFLLCRRAIPPRRGYFNLCAGYMEKGESLAEAAAREAREEAGAQIDIGQILGIFDISHIGQVHIYFKATLSNTDIEPGYESLDARLVRWDEIPWGDLAFPTVSWALMAWEKQAALGGEWGGTPFRNPVLSGYEGSTNVWYRPDKGGLVHDESWMRREGREESVGSAGERQGRGGAGECKKSAQETHERDR
Sbjct:    1 MLEPYCLSALIRSTSRLLGVRGRKSLPCPSYTRYRRPFAKYASSTTGEQDLSGFELRQYGKDDPPRLTCKTCSHILYDNPKIVTGAVVTSRCPQTGDSLFLLCRRAIPPRRGYFNLCAGYMEKGESLAEAAAREAREEAGAQIDIGQILGIFDISHIGQVHIYFKATLSNTDIEPGYESLDARLVRWDEIPWGDLAFPTVSWALMAWEKQAALGGEWGGTPFRNPVLSGYEGSTNVWYRPDKGGLVHDESWMRREGREESVGSAGERQGRGGAGECKKSAQETHERDR 288          
BLAST of EWM25723.1 vs. NCBI_GenBank
Match: gi|1099595130|emb|SFL04982.1| (ADP-ribose pyrophosphatase YjhB, NUDIX family [Roseomonas stagni DSM 19981])

HSP 1 Score: 164.466 bits (415), Expect = 7.476e-47
Identity = 86/173 (49.71%), Postives = 110/173 (63.58%), Query Frame = 0
Query:   54 FELRQYGKDDPPRLTCKTCSHILYDNPKIVTGAVVTSRCPQTGDSLFLLCRRAIPPRRGYFNLCAGYMEKGESLAEAAAREAREEAGAQIDIGQILGIFDISHIGQVHIYFKATLSNTDIEPGYESLDARLVRWDEIPWGDLAFPTVSWALMAWEKQAALGGEWGGTPFRNPV 226
            F  R    +D  RLTC  C +I Y+NPKIVTG+VV        D   +LCRRAI PRRG++ + AGYME  E++ EAA REAREEA A + +  IL ++ I+ IGQV + F+A L++    PG ESL+ RL  W+EIPWGDLAFP+V W L AW +   +G    G P  NPV
Sbjct:    8 FVRRTPEGEDRERLTCADCGYIAYENPKIVTGSVVVV------DGKVMLCRRAIEPRRGFWTIPAGYMELDETVEEAAMREAREEACADLALDGILAVYSIARIGQVQVLFRARLASPGFAPGVESLEVRLFDWNEIPWGDLAFPSVHWVLKAWRE---VGDGPLGAPRTNPV 171          
BLAST of EWM25723.1 vs. NCBI_GenBank
Match: gi|921295021|ref|WP_053230406.1| (NUDIX hydrolase [Sandaracinus amylolyticus] >gi|816953408|gb|AKF02914.1| FAD pyrophosphatase [Sandaracinus amylolyticus])

HSP 1 Score: 160.229 bits (404), Expect = 2.767e-45
Identity = 83/163 (50.92%), Postives = 106/163 (65.03%), Query Frame = 0
Query:   62 DDPPRLTCKTCSHILYDNPKIVTGAVVTSRCPQTGDSLFLLCRRAIPPRRGYFNLCAGYMEKGESLAEAAAREAREEAGAQIDIGQILGIFDISHIGQVHIYFKATLSNTDIEPGYESLDARLVRWDEIPWGDLAFPTVSWALMAWEKQAALGGEWGGTPFRN 224
            DD PRL C  CS++ Y+NPKIV G+VVTS      D   LL RRAI PRRG++ L AGY+E GES    A REAREEA A+I +  +L ++ I+HI QV ++++A +   +  PG ESL+ RL  WDEIPW +LAFPTV WAL  ++   A  G   G PF N
Sbjct:   18 DDKPRLVCPECSYVAYENPKIVVGSVVTS-----DDGRVLLVRRAIEPRRGFWTLPAGYLELGESPEHGAMREAREEACAEIALDGLLAVYSITHISQVQLFYRARMVREECAPGIESLEVRLFAWDEIPWAELAFPTVHWALGHFD---AARGRALGQPFGN 172          
BLAST of EWM25723.1 vs. NCBI_GenBank
Match: gi|1175278636|ref|WP_081826431.1| (hypothetical protein [Candidatus Phaeomarinobacter ectocarpi] >gi|610513192|emb|CDO59532.1| MutT/nudix family protein [Candidatus Phaeomarinobacter ectocarpi])

HSP 1 Score: 159.458 bits (402), Expect = 1.484e-44
Identity = 82/177 (46.33%), Postives = 109/177 (61.58%), Query Frame = 0
Query:   50 DLSGFELRQYGKDDPPRLTCKTCSHILYDNPKIVTGAVVTSRCPQTGDSLFLLCRRAIPPRRGYFNLCAGYMEKGESLAEAAAREAREEAGAQIDIGQILGIFDISHIGQVHIYFKATLSNTDIEPGYESLDARLVRWDEIPWGDLAFPTVSWALMAWEKQAALGGEWGGTPFRNPV 226
            D   F LR    D   R  C  C +I Y NPKIV G+VVT  C + GD  +L+CRRAI PR+G++ L AGY+E GE+    A REA EEA A I I  +L ++ ++HI QV + +KATL + DI+ G ESL+  L R ++IPW +LAFP+V WAL  +++ A         PF NPV
Sbjct:   31 DKHAFTLRVPDGDTHARHVCNDCGYIHYTNPKIVVGSVVTWHCAEDGDVRYLMCRRAIEPRKGFWTLPAGYLENGETTDAGARREALEEACADIRIDALLAVYSLAHISQVQLMYKATLLSPDIDVGEESLEVALFRKEDIPWDELAFPSVRWALTQFQEVAQTP---VFAPFTNPV 204          
BLAST of EWM25723.1 vs. NCBI_GenBank
Match: gi|1011079248|ref|WP_062017654.1| (NUDIX hydrolase [Aureimonas sp. AU4])

HSP 1 Score: 158.303 bits (399), Expect = 2.257e-44
Identity = 85/172 (49.42%), Postives = 112/172 (65.12%), Query Frame = 0
Query:   54 FELRQYGKDDPPRLTCKTCSHILYDNPKIVTGAVVTSRCPQTGDSLFLLCRRAIPPRRGYFNLCAGYMEKGESLAEAAAREAREEAGAQIDIGQILGIFDISHIGQVHIYFKATLSNTDIEPGYESLDARLVRWDEIPWGDLAFPTVSWALMAWEKQAALGGEWGGTPFRNP 225
            F +R    D  PR  C  C  + Y+NPKIV G+VV     + GD + LLCRRAI PRRG++ + AGYME  E+  E A+REAREEAGA+I I ++L ++ +  I QV + F+ATL +  +E G ESL+ RL RWD+IPW +LAFP+V WAL   E++AA G      PF NP
Sbjct:    9 FSVRVPEGDGLPRRVCDHCRFVAYENPKIVVGSVV-----RAGDEV-LLCRRAIEPRRGFWTIPAGYMELNETPEEGASREAREEAGARIAIERLLAVYSVPRISQVQLIFRATLEDRALEAGPESLELRLFRWDDIPWDELAFPSVHWALHH-EREAAAGA--SPVPFGNP 171          
BLAST of EWM25723.1 vs. NCBI_GenBank
Match: gi|1180983185|ref|WP_084398511.1| (NUDIX hydrolase [Henriciella aquimarina])

HSP 1 Score: 157.918 bits (398), Expect = 2.613e-44
Identity = 86/172 (50.00%), Postives = 106/172 (61.63%), Query Frame = 0
Query:   54 FELRQYGKDDPPRLTCKTCSHILYDNPKIVTGAVVTSRCPQTGDSLFLLCRRAIPPRRGYFNLCAGYMEKGESLAEAAAREAREEAGAQIDIGQILGIFDISHIGQVHIYFKATLSNTDIEPGYESLDARLVRWDEIPWGDLAFPTVSWALMAWEKQAALGGEWGGTPFRNP 225
            FE R    DD  RL C TC  I Y+NP+IV G+VV        D   LLCRRAI PR+G++ L AG+ME GES+ EAA REAREEA A I I ++L ++ +  IGQV I F+A+L  +D  PG ES + RL  W +IPW DLAFPTV WAL  + +   L       PF NP
Sbjct:    9 FEYRIPAGDDRERLVCNTCGFIDYENPRIVAGSVVLR------DRKILLCRRAIEPRKGFWTLPAGFMEHGESIEEAAMREAREEACATIAIERVLAMYTVHRIGQVQIMFRASL-ESDFRPGPESEETRLFDWKDIPWSDLAFPTVVWALTQYAESRHLE---AFPPFGNP 170          
BLAST of EWM25723.1 vs. NCBI_GenBank
Match: gi|1141227259|ref|WP_076955753.1| (NUDIX hydrolase [Roseomonas sp. M3] >gi|1139564865|gb|ONG58773.1| NUDIX hydrolase [Roseomonas sp. M3])

HSP 1 Score: 156.762 bits (395), Expect = 7.019e-44
Identity = 78/147 (53.06%), Postives = 99/147 (67.35%), Query Frame = 0
Query:   62 DDPPRLTCKTCSHILYDNPKIVTGAVVTSRCPQTGDSLFLLCRRAIPPRRGYFNLCAGYMEKGESLAEAAAREAREEAGAQIDIGQILGIFDISHIGQVHIYFKATLSNTDIEPGYESLDARLVRWDEIPWGDLAFPTVSWALMAWE 208
            +D  RLTC  C  I Y+NPKIV GAVV            LLCRRAIPPR G++ L AG+ME GE++AE AAREA EEA A+I I  IL ++ I+ IGQV I F+A+L+   I PG ESL+ R   W++IPW ++AFP+V WAL  W+
Sbjct:   13 EDRERLTCADCGFINYENPKIVAGAVVVD------GGRVLLCRRAIPPRSGFWTLPAGFMELGETVAEGAAREAFEEASARIAIEGILAVYSIARIGQVQILFRASLAEPGIAPGPESLETRFFAWEDIPWAEIAFPSVHWALHHWQ 153          
BLAST of EWM25723.1 vs. NCBI_GenBank
Match: gi|1180976990|ref|WP_084393162.1| (NUDIX hydrolase [Henriciella sp. LA220])

HSP 1 Score: 156.377 bits (394), Expect = 7.261e-44
Identity = 83/164 (50.61%), Postives = 104/164 (63.41%), Query Frame = 0
Query:   62 DDPPRLTCKTCSHILYDNPKIVTGAVVTSRCPQTGDSLFLLCRRAIPPRRGYFNLCAGYMEKGESLAEAAAREAREEAGAQIDIGQILGIFDISHIGQVHIYFKATLSNTDIEPGYESLDARLVRWDEIPWGDLAFPTVSWALMAWEKQAALGGEWGGTPFRNP 225
            DD  R  C TC  I Y NP+IV GAVV        D   LLC+RAI PRRG++ L AGYME GE++ +AA REAREEA A I+I ++L ++ +  IGQV + F+A L  +DI PG ESL+ +LV W +IPW  LAFPTV WAL  +   A   G+    PF NP
Sbjct:   17 DDRERRVCGTCGFIDYQNPRIVAGAVVCK------DDQILLCKRAIEPRRGFWTLPAGYMELGETVEQAAMREAREEACADIEIDRVLAVYSVPRIGQVQVMFRANLM-SDIRPGPESLETKLVAWKDIPWSQLAFPTVVWALTHF---AETRGQSDFAPFANP 170          
BLAST of EWM25723.1 vs. NCBI_GenBank
Match: gi|653235745|ref|WP_027441466.1| (NUDIX hydrolase [Ponticaulis koreensis])

HSP 1 Score: 156.377 bits (394), Expect = 7.815e-44
Identity = 84/174 (48.28%), Postives = 106/174 (60.92%), Query Frame = 0
Query:   52 SGFELRQYGKDDPPRLTCKTCSHILYDNPKIVTGAVVTSRCPQTGDSLFLLCRRAIPPRRGYFNLCAGYMEKGESLAEAAAREAREEAGAQIDIGQILGIFDISHIGQVHIYFKATLSNTDIEPGYESLDARLVRWDEIPWGDLAFPTVSWALMAWEKQAALGGEWGGTPFRNP 225
            + F++     DD  R  C+ C  I Y NPKIV G+VVT       +   L+C+RAI PR G++ L AG+ME GES+ E AAREAREEA A I+I ++L ++ I  I QV I FKA L + DI  G ES D  LV WDEIPW ++AFP+  WAL  W    +L GE    PF NP
Sbjct:    6 ADFKIGIPESDDRERRMCQRCDFIDYVNPKIVVGSVVT------WEDKILICKRAIEPRLGFWTLPAGFMENGESIEEGAAREAREEACADIEIERLLAVYSIPRISQVQIMFKAKLRSPDIAAGPESQDVMLVTWDEIPWKEMAFPSAVWALKQWH---SLNGETVHPPFGNP 170          
BLAST of EWM25723.1 vs. NCBI_GenBank
Match: gi|1098009543|emb|SFF18619.1| (ADP-ribose pyrophosphatase YjhB, NUDIX family [Aureimonas phyllosphaerae])

HSP 1 Score: 155.992 bits (393), Expect = 1.721e-43
Identity = 85/173 (49.13%), Postives = 106/173 (61.27%), Query Frame = 0
Query:   53 GFELRQYGKDDPPRLTCKTCSHILYDNPKIVTGAVVTSRCPQTGDSLFLLCRRAIPPRRGYFNLCAGYMEKGESLAEAAAREAREEAGAQIDIGQILGIFDISHIGQVHIYFKATLSNTDIEPGYESLDARLVRWDEIPWGDLAFPTVSWALMAWEKQAALGGEWGGTPFRNP 225
             F +R    D  PR  C  C  + Y+NPKIV G+VV S      +   LLCRRAI PRRGY+ + AGYME  E+  E A REAREEAGA I I ++L I+ +  I QV + F+A LS+  +E G E+L+ R   WDEIPW DLAFP+V WAL    ++AA GG     PF NP
Sbjct:    6 AFSVRVPEGDAMPRKVCDHCGFVAYENPKIVVGSVVRS------EGRILLCRRAIEPRRGYWTIPAGYMELNETPEEGAMREAREEAGASIAIERLLAIYSVPRISQVQLIFRAELSDPAVEAGVETLELRFFAWDEIPWDDLAFPSVHWALN--HERAAEGGA-PPVPFGNP 169          
The following BLAST results are available for this feature:
BLAST of EWM25723.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585107583|gb|EWM25723.1|0.000e+0100.00nudix hydrolase [Nannochloropsis gaditana][more]
gi|1099595130|emb|SFL04982.1|7.476e-4749.71ADP-ribose pyrophosphatase YjhB, NUDIX family [Ros... [more]
gi|921295021|ref|WP_053230406.1|2.767e-4550.92NUDIX hydrolase [Sandaracinus amylolyticus] >gi|81... [more]
gi|1175278636|ref|WP_081826431.1|1.484e-4446.33hypothetical protein [Candidatus Phaeomarinobacter... [more]
gi|1011079248|ref|WP_062017654.1|2.257e-4449.42NUDIX hydrolase [Aureimonas sp. AU4][more]
gi|1180983185|ref|WP_084398511.1|2.613e-4450.00NUDIX hydrolase [Henriciella aquimarina][more]
gi|1141227259|ref|WP_076955753.1|7.019e-4453.06NUDIX hydrolase [Roseomonas sp. M3] >gi|1139564865... [more]
gi|1180976990|ref|WP_084393162.1|7.261e-4450.61NUDIX hydrolase [Henriciella sp. LA220][more]
gi|653235745|ref|WP_027441466.1|7.815e-4448.28NUDIX hydrolase [Ponticaulis koreensis][more]
gi|1098009543|emb|SFF18619.1|1.721e-4349.13ADP-ribose pyrophosphatase YjhB, NUDIX family [Aur... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4971rna4971Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications