rna4971, rna4971 (mRNA) Nannochloropsis gaditana

Overview
Namerna4971
Unique Namerna4971
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length708
Alignment locationCM002464.1:803081..804068 +

Link to JBrowse

Properties
Property NameValue
Productnudix hydrolase
Orig transcript idgnl|cribi|Naga_100154g11.6621.mrna
Orig protein idgnl|cribi|Naga_100154g11.6621
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:803081..804068 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100154g11gene4799Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4971rna4971-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25723.1cds4959Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4971 ID=rna4971|Name=rna4971|organism=Nannochloropsis gaditana|type=mRNA|length=708bp
ATGCGAACGACTGTGTCTGCTTCGATTTATGCCATACTTCTGACAGCAAC
CGCCGCTCCTGTCTTGGCGGACTTCTCCTTTGACAAGGCCTGGTTTCATG
GAGGCGATGGAGGCGCCTGTAAGACTGTGGTCCCCCAGAACCCTGTAAAC
TTGCAGGAGTATGCAAGCAAACGCTGGTACATCCATCAGCAAATGGCAAC
ACAAGCCGGAAATCCTAACGGAGAATGGAACTCCTGTGTGTATGCAGAGT
ATACAATCAAGTCCCCCAACAACGTAGCTGTTCACAACTATGCCAACGAA
GGTGGTGTCAACAACATCATTCGCGAAGCGGACCTCTGCGCTACTGTCCG
TGATCCCGAAAATGATCCTGGTCGCTTGGCTGTTGGTCCGTGTTTCCTTG
AGTTTGCCAACCGACTGCTTTATGGACCCTACTTTATCGTGGCTTACGAC
GAAGCCGAGGGGTACGCCTTAATCTCGGGAGGTTCTCCTACGATACCCAC
AAAAGATGGGCTTTGCACGACTCAACGTGGATTCAACAATGCGGGGCTCT
GGATCTTTTCACGATCCAATGTTCGCGATGAGGCTTTGATACAAAAGTTG
CGTGGAATTGCTGTGGAAAAGGGCTTTGATGTGGACGTATTGGAAGACGT
CCAGCATGAAGGATGTACTTACCGGCCTTCGTCAGAACCTGCGGGGCTGC
GTACGTAA
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protein sequence of rna4971

>rna4971-protein ID=rna4971-protein|Name=rna4971|organism=Nannochloropsis gaditana|type=polypeptide|length=288bp
MLEPYCLSALIRSTSRLLGVRGRKSLPCPSYTRYRRPFAKYASSTTGEQD
LSGFELRQYGKDDPPRLTCKTCSHILYDNPKIVTGAVVTSRCPQTGDSLF
LLCRRAIPPRRGYFNLCAGYMEKGESLAEAAAREAREEAGAQIDIGQILG
IFDISHIGQVHIYFKATLSNTDIEPGYESLDARLVRWDEIPWGDLAFPTV
SWALMAWEKQAALGGEWGGTPFRNPVLSGYEGSTNVWYRPDKGGLVHDES
WMRREGREESVGSAGERQGRGGAGECKKSAQETHERDR
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mRNA from alignment at CM002464.1:803081..804068+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4971 ID=rna4971|Name=rna4971|organism=Nannochloropsis gaditana|type=mRNA|length=988bp|location=Sequence derived from alignment at CM002464.1:803081..804068+ (Nannochloropsis gaditana)
ATGCTAGAGCCCTACTGCCTCTCTGCACTGATACGCtcgacctcccgcct
cctgggtgtgaggggcaggaagagctTGCCATGTCCTTCATATACCAGAT
ATCGGCGGCCGTTTGCGAAATATGCGTCCTCAACTACGGGAGAGCAAGAT
TTGTCGGGTTTCGAGCTGCGACAATATGGCAAAGATGATCCGCCACGTCT
GACATGCAAGACTTGCTCGCACATCTTGTATGACAACCCCAAGGTACGGA
TTGACGAGCGGTACGAAGGGACCAAATTACTTGGAGCCACAGGCATTCAT
TCACGCAGGTCGTGAGTGTTATCGATGTATTACTTTAagtcgcctccctc
ttttttgtcACCAGATCGTGACGGGCGCTGTCGTCACCTCCCGGTGCCCC
CAGACGGGcgactccctcttccttctgtgCCGGCGTGCCATTCCACCACG
TCGAGGCTATTTCAATCTTTGTGCGGGGTACATGGAGAAAGGCGAATCCT
TGGCTGAGGCCGCAGCACGCGAAGCGCGGGAGGAAGCTGGTGCCCAAATA
GACATCGGTCAAATTTTAGGGATCTTTGACATCAGTCACATAGGACAAGT
GCACATATATTTCAAAGCGACCCTCAGCAATACGGACATCGAACCGGGCT
ACGAGAGTCTGGATGCGCGTCTGGTACGGTGGGACGAGATTCCATGGGGC
GACTTGGCATTTCCCACCGTCTCCTGGGCCTTGATGGCgtgggagaagca
ggcggccttggggggggaatggggagggacgcCGTTTCGGAATCCTGTGC
TCTCAGGATATGAAGGTAGCACAAATGTCTGGTATCGCCCGGATAAAGGC
GGATTGGTGCACGACGAGTCGTGGATgcgtcgggagggaagggaggaaag
tgtgGGGTCCgcgggagagaggcaagggcggggtggagcaGGGGAATGCA
AAAAGAGCGCACAGGAAACGCATGAGAGGGACAGGTGA
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Coding sequence (CDS) from alignment at CM002464.1:803081..804068+

>rna4971 ID=rna4971|Name=rna4971|organism=Nannochloropsis gaditana|type=CDS|length=1734bp|location=Sequence derived from alignment at CM002464.1:803081..804068+ (Nannochloropsis gaditana)
ATGCTAGAGCCCTACTGCCTCTCTGCACTGATACGCtcgacctcccgcct
cctgggtgtgaggggcaggaagagctTGCCATGTCCTTCATATACCAGAT
ATCGGCGGCCGTTTGCGAAATATGCGTCCTCAACTACGGGAGAGCAAGAT
TTGTCGGGTTTCGAGCTGCGACAATATGGCAAAGATGATCCGCCACGTCT
GACATGCAAGACTTGCTCGCACATCTTGTATGACAACCCCAAGATCGTGA
CGGGCGCTGTCGTCACCTCCCGGTGCCCCCAGACGGGcgactccctcttc
cttctgtgCCGGCGTGCCATTCCACCACGTCGAGGCTATTTCAATCTTTG
TGCGGGGTACATGGAGAAAGGCGAATCCTTGGCTGAGGCCGCAGCACGCG
AAGCGCGGGAGGAAGCTGGTGCCCAAATAGACATCGGTCAAATTTTAGGG
ATCTTTGACATCAGTCACATAGGACAAGTGCACATATATTTCAAAGCGAC
CCTCAGCAATACGGACATCGAACCGGGCTACGAGAGTCTGGATGCGCGTC
TGGTACGGTGGGACGAGATTCCATGGGGCGACTTGGCATTTCCCACCGTC
TCCTGGGCCTTGATGGCgtgggagaagcaggcggccttggggggggaatg
gggagggacgcCGTTTCGGAATCCTGTGCTCTCAGGATATGAAGGTAGCA
CAAATGTCTGGTATCGCCCGGATAAAGGCGGATTGGTGCACGACGAGTCG
TGGATgcgtcgggagggaagggaggaaagtgtgGGGTCCgcgggagagag
gcaagggcggggtggagcaGGGGAATGCAAAAAGAGCGCACAGGAAACGC
ATGAGAGGGACAGGTGAATGCTAGAGCCCTACTGCCTCTCTGCACTGATA
CGCtcgacctcccgcctcctgggtgtgaggggcaggaagagctTGCCATG
TCCTTCATATACCAGATATCGGCGGCCGTTTGCGAAATATGCGTCCTCAA
CTACGGGAGAGCAAGATTTGTCGGGTTTCGAGCTGCGACAATATGGCAAA
GATGATCCGCCACGTCTGACATGCAAGACTTGCTCGCACATCTTGTATGA
CAACCCCAAGATCGTGACGGGCGCTGTCGTCACCTCCCGGTGCCCCCAGA
CGGGcgactccctcttccttctgtgCCGGCGTGCCATTCCACCACGTCGA
GGCTATTTCAATCTTTGTGCGGGGTACATGGAGAAAGGCGAATCCTTGGC
TGAGGCCGCAGCACGCGAAGCGCGGGAGGAAGCTGGTGCCCAAATAGACA
TCGGTCAAATTTTAGGGATCTTTGACATCAGTCACATAGGACAAGTGCAC
ATATATTTCAAAGCGACCCTCAGCAATACGGACATCGAACCGGGCTACGA
GAGTCTGGATGCGCGTCTGGTACGGTGGGACGAGATTCCATGGGGCGACT
TGGCATTTCCCACCGTCTCCTGGGCCTTGATGGCgtgggagaagcaggcg
gccttggggggggaatggggagggacgcCGTTTCGGAATCCTGTGCTCTC
AGGATATGAAGGTAGCACAAATGTCTGGTATCGCCCGGATAAAGGCGGAT
TGGTGCACGACGAGTCGTGGATgcgtcgggagggaagggaggaaagtgtg
GGGTCCgcgggagagaggcaagggcggggtggagcaGGGGAATGCAAAAA
GAGCGCACAGGAAACGCATGAGAGGGACAGGTGA
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Synonyms
Publications