rna4968, rna4968 (mRNA) Nannochloropsis gaditana

Overview
Namerna4968
Unique Namerna4968
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1236
Alignment locationCM002464.1:792047..794043 +

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100154g8.6619.mrna
Orig protein idgnl|cribi|Naga_100154g8.6619
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:792047..794043 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100154g8gene4796Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4968rna4968-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25721.1cds4956Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4968 ID=rna4968|Name=rna4968|organism=Nannochloropsis gaditana|type=mRNA|length=1236bp
ATGTGTTATGATGCACGTATTTCTCACGTTTCCCCTGGTTTCACCGTTCC
TGCACATGGTTACAGTCACACTCCCATAATCCTTCAGATGGCTCGCCTTT
TTGTCACCGTTGCCGCCCTGGTGGCCGCCTGTGCCACGGTAAACGCGTTC
CAAGTGCCGCGCATGTCCTTGGACAAGTACAGGAGCGAGCTTGCTGAGAC
CGCCAAGAAGATTGCTTCCCCCGGCAAGGGTATCCTGGCCGTGGACGAGT
CCACCAAGACCATTGGCAAGCGCTTGCAGTCCATCGGGGTTGAGAACACA
GAGGCCAACCGTCAGGCTTACCGAGGCCTCCTCTTCACCACCCCCAAGCT
CGGCGACTTTATCTCTGGGGCCATCCTGTACGAGGAGACCCTCTTCCAGA
ACAACGTGGACGGCACCCCCTTCGTCAAGAACCTGGCCTCCGTGGGCGTG
ATCCCAGGCATCAAGGTGGACATGGGCCTCTCCCCCCTCCCCGGCGGGCA
CCCCGTCGAGACCTGGTGCACAGGCCTGGACGGCCTGGTGGAGCGCGCCC
AGAAATACTACGCCCAAGGCGCCCGTTTCGCCAAGTGGCGCGCGGTGTTG
CAGATCACGTCGGACGGGGCTCCCTCTGAGCTTTCCATCCAGGAGAACGC
CTGGGGCCTGGCTCGGTACGCCCGGGCCGTGCAGGAGGGTGGCCTGGTGC
CCATCGTGGAGCCTGAGATTTTGATGGACGGCGACCACAACATCGACACC
ACGGCCCGCGTCCAGGAGCGTGTGCTGGCCGCGGTCTACAAGGCCTTGTC
GGACAACGGGGTCTTCCTGGAGGGCTCCCTCTTGAAGCCCTCCATGACCC
TCCCCGGCGCGGACTGCGGCGAGTCTGTCACCCCCGAGAAGATCGCTGAG
TACACCGTCCGCACCCTGGAACGCCACGTCCCTTCCTCCGTTCCCGGTGT
CATGTTCCTCTCGGGCGGGATGTCCGAGGAGGAGGCTTCCATCAACCTGA
ACGCCCTCAACAAGCGCGAGCGCAAGGGCCCCTGGTCCCTCTCCTTCTCC
TACGGACGCGCCCTCCAACAATCCTGCCTCAAGGCGTGGATGGGCAAGGC
CGAGAACGTCCCCGCGGCACGCACAGCCCTCATGGCCCGCGCGCAGGCCA
ACAGCGAGGCCAACTTGGGCAAGTACGTGGCGGGCTCCCAGCCGTCCGCG
GACGAGACCCTCTTCGTGAAGGGATACAAGTACTAA
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protein sequence of rna4968

>rna4968-protein ID=rna4968-protein|Name=rna4968|organism=Nannochloropsis gaditana|type=polypeptide|length=426bp
MAKRARKAGGSTPLEPRAAATRTEPDSTTTAVAPTTRGSSPSSPGSSSYR
SEGRPSMARAPLPEDVDGRISPEPAPPSLVTAASAPTSDPATIPHTSCDF
SPHPPPALPPPAPACATGKERLAPVAARDYTLFLRRPHRGTPPPPRPPPP
PPPALDTHYLLRTKDAFSAYFRVFLRQWAGVPLLPLPSPPPPPASPSHPS
PHAPGLITTGVLRDHVRGGLRCLSHLELLHVARQQWSHLSRRRRRPYFRL
GPSYREGRGGVHPSSRRVAAEASRLARGYAAFQARENAPPWAGPEGLPLA
PKVKSLAAWEMRRGRIPVVEAQARIGRMTEGERRRGRQAVREEKEEYDRA
VERFCARHGRGGIEEGMEGGRGRGAREEEGEVGQEERGRELRKEEEEEGG
VGGKTRRRRTTRTRTRTMMTSLWVCF
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mRNA from alignment at CM002464.1:792047..794043+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4968 ID=rna4968|Name=rna4968|organism=Nannochloropsis gaditana|type=mRNA|length=1997bp|location=Sequence derived from alignment at CM002464.1:792047..794043+ (Nannochloropsis gaditana)
GAAGGAATGCGAAACGGCAAGTTGGCCGGACCTTCATTGTACCCTCGTGT
CTTTAAATTCTCCCTGGTTGTGATATTTTTTACCAAGAATGTTGTACGTG
GTACACAATTATACCTGCCTTACTGACTTTTCAAAGGCTTGAAAGGAGAC
CCTGTGGGGCTTGACCTTCCCCAAATGAAAAATATCACACTTTTTGTTTC
TTCACACATTACACACATCTCTTGTATACCTCTCGTTGTCGCAAGTGTGT
CGCGATGAAGGCTTTGACAGGCACACGGTCCCACTCGCGACAAGCAGGGC
TTGCAACAGCTTTATGGCCCACTTTGCACCCGCTGGCGGTGGAGTGACGG
AGACAAGACGAGCCTCCATGCACATGGACATGTCCATGCCGCATCTTTGA
TTGGGCCATGCACTGGGGTTGACATCGTGAAAGGGCAGCATATACGTCCA
CGGCATGGCAAAGCGAGCGcgcaaggcgggagggagcacgCCTTTGGAGC
CCAGAGCAGCAGCCACCCGGACAGAGCCAGATTCCACCACGACAGCCGTG
GCCCCCACGACGCGTGggtcttccccttcgtcgcCGGGAAGCAGTTCATA
TCGGTCTGAGGGCCGTCCGTCCATGGCAAGGGCCCCCTTGCCCGAAGATG
TGGATGGGCGAATATCGCCTGAacctgcccccccgtccctggtCACGGCA
GCCTCGGCACCCACCTCGGACCCAGCAACTATCCCGCATACGTCCTGTGA
CTTCAgcccccatcccccacctgccctcccaccccccgcTCCTGCTTGTG
CCACCGGCAAGGAGCGCCTGGCGCCCGTCGCGGCCCGTGACTACACCCTC
TTCCTACGCCGGCCGCACCGCGgaacgcctcctcccccccgtcctcctcc
tcccccacccccggccCTGGACACGCACTACCTGCTGCGTACCAAGgacg
ctttctccgcctaCTTCCGGGTATTCTTGCGTCAGTGGGCAGGtgttcct
ctcctgcccctcccctcccccccacccccgcctgcctctccaagccaccc
ttccccccacgcGCCCGGCCTGATCACCACGGGGGTCCTCCGGGACCACG
TCCGTGGCGGGCTTCGATGCCTGTCTCACCTCGAGCTCCTGCACGTGGCG
CGACAACAGTGGTCCCACCTGtcccgtcgccgccgtcgGCCTTATTTCCG
CCTGGGGCCCTCCTACCGGGAGGGTCGAGGCGGGGTTCACCCGTCCTCTC
GGCGCGTGGCTGCCGAGGCATCGCGTCTCGCCCGAGGTTATGCGGCCTTC
CAAGCGCGGGAGAATGCCCCTCCATGGGCAGGACCGGAAGGGTTGCCCTT
GGCGCCCAAAGTGAAgtccttggccgcctgggagatgcggcgggggcgga
tCCCAGTGGTGGAAGCGCAAGCACGGAtcgggaggatgacggagggggag
aggcggagaggtCGACAGGCGgtccgggaggagaaggaggagtacgaTAG
GGCGGTGGAGCGTTTTTGTGCCAGGcacggacggggaggaatcgaggaag
ggatggaggggggcagggggcgaggcgcgagggaggaggagggagaggtt
gggcaggaggagaggggaagagaactgaggaaggaagaggaggaggaagg
gggggtcggggggaagacgaggaggaggaggacgacgaggacgaggacga
ggacgatgatgacGTCCCTCTGGGTGTGCTTCTGAGCTCGACTCGAGGGA
GGCGTCATCggtaaccctaaccctaacatgATATCCGGGAGAAACGAGAG
CCCGAGTCTTTTCGTGCCTAGGATGATGACGATAATATGGCGTTGTgcac
aaagggaaggaaagggtttGCCGTGGTAAGGACGACGCGGGAGTGCAAGC
CATGCGAATCGGAGTGCTAGCGAGGCAGCAATGCCATGGTAGTCGGTGTA
ATGATCAGGAAATCAACATGCATTGCGGCCTGCGTCACCGGCTCGCG
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Coding sequence (CDS) from alignment at CM002464.1:792047..794043+

>rna4968 ID=rna4968|Name=rna4968|organism=Nannochloropsis gaditana|type=CDS|length=1281bp|location=Sequence derived from alignment at CM002464.1:792047..794043+ (Nannochloropsis gaditana)
ATGGCAAAGCGAGCGcgcaaggcgggagggagcacgCCTTTGGAGCCCAG
AGCAGCAGCCACCCGGACAGAGCCAGATTCCACCACGACAGCCGTGGCCC
CCACGACGCGTGggtcttccccttcgtcgcCGGGAAGCAGTTCATATCGG
TCTGAGGGCCGTCCGTCCATGGCAAGGGCCCCCTTGCCCGAAGATGTGGA
TGGGCGAATATCGCCTGAacctgcccccccgtccctggtCACGGCAGCCT
CGGCACCCACCTCGGACCCAGCAACTATCCCGCATACGTCCTGTGACTTC
AgcccccatcccccacctgccctcccaccccccgcTCCTGCTTGTGCCAC
CGGCAAGGAGCGCCTGGCGCCCGTCGCGGCCCGTGACTACACCCTCTTCC
TACGCCGGCCGCACCGCGgaacgcctcctcccccccgtcctcctcctccc
ccacccccggccCTGGACACGCACTACCTGCTGCGTACCAAGgacgcttt
ctccgcctaCTTCCGGGTATTCTTGCGTCAGTGGGCAGGtgttcctctcc
tgcccctcccctcccccccacccccgcctgcctctccaagccacccttcc
ccccacgcGCCCGGCCTGATCACCACGGGGGTCCTCCGGGACCACGTCCG
TGGCGGGCTTCGATGCCTGTCTCACCTCGAGCTCCTGCACGTGGCGCGAC
AACAGTGGTCCCACCTGtcccgtcgccgccgtcgGCCTTATTTCCGCCTG
GGGCCCTCCTACCGGGAGGGTCGAGGCGGGGTTCACCCGTCCTCTCGGCG
CGTGGCTGCCGAGGCATCGCGTCTCGCCCGAGGTTATGCGGCCTTCCAAG
CGCGGGAGAATGCCCCTCCATGGGCAGGACCGGAAGGGTTGCCCTTGGCG
CCCAAAGTGAAgtccttggccgcctgggagatgcggcgggggcggatCCC
AGTGGTGGAAGCGCAAGCACGGAtcgggaggatgacggagggggagaggc
ggagaggtCGACAGGCGgtccgggaggagaaggaggagtacgaTAGGGCG
GTGGAGCGTTTTTGTGCCAGGcacggacggggaggaatcgaggaagggat
ggaggggggcagggggcgaggcgcgagggaggaggagggagaggttgggc
aggaggagaggggaagagaactgaggaaggaagaggaggaggaagggggg
gtcggggggaagacgaggaggaggaggacgacgaggacgaggacgaggac
gatgatgacGTCCCTCTGGGTGTGCTTCTGA
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Synonyms
Publications