rna4948, rna4948 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4948
Unique Name	rna4948
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1341
Alignment location	CM002464.1:738425..740212 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100087g15.1111.mrna
Orig protein id	gnl\|cribi\|Naga_100087g15.1111
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002464.1	supercontig	CM002464.1:738425..740212 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100087g15	gene4777	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25731.1	cds4936	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4948	rna4948-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002464.1:738425..740212-
coding sequence from alignment at CM002464.1:738425..740212-

mRNA sequence

>rna4948 ID=rna4948|Name=rna4948|organism=Nannochloropsis gaditana|type=mRNA|length=1341bp
ATGCATGAGTTCGAATTCGTAATGAAACTCGTGCACAAGAAGGAGGAGGA
CGGTGTTACGTTTGACAGACGTGATTTCGCCTACTGCAACAGCCCCAACA
ACGTGACCTTTCCCGGGTTGGACGCCGAGGTCGCGAGTCGTTACCCAGGC
CTGCGCCTCCTCCAGGTCCAGGCAATAGCCAGGCATGGGTCCCGTGTCCC
GTACATCAAGTACATGAATTGCTGGGACGACTACGGCTTCGAGTGGGACT
GCAACGTGACGGAGATGACCCGGGCTTCTTCCTCGGCCGGGGCCCACGAC
GCCCGCTCGCCCCCCTTCATTTTCCGCAAGCTCTATGACGGCTCCCCGAC
CGTCCTTGGCGGCACCTGCCATCTGGGTCAGCTCGTCGTGGAGGGCTTCG
AGCAAGAGGCAGCGAATGGCCGCGCCCTGGGCGCCGCCTACATAGGACAC
GGGCCTTTGAAGCTCTTCGCACGCGATCAGCTGGGGGCCATGAAAGCGCT
GGCCTTGTATCTGCGGTCGGACGACGACCCTTCTTTCCGGACTGAGATGT
CGGGCGAGGCATTGGTGCAGAGCATGTTTGAGGCCCGCCGTGAGGACGTG
ACGCTGCGCTGGCACACGGGGGACTTCGCCTTGGACGAAATCGCCCCGAA
CCACAACGTCTGCCCCGCCCTGTCCGGCGTGGAGAGGGAGGCGATGGCCT
CGGCCGAGTGGGCGGCATACAACCAGTCCGCCGCGGTCCGGGAGCTGGAC
GCGCGGATGGAGAGGGAGCTTCCCGGGTACCAGTGGGAGCACATGCTGGA
TTGCTTGGGCACCACCGTCTGTACCGGCCGCGCTTTCCCTCCCTCCCTCA
CGCACCGGACGTTGGCGGACGCCTTTGTGCACGCGGCCCGGACACGGAGT
TTTAAATTCGCGTGGAACGACGCGTACTACAGCAAGTTGGGGATCGGGCC
TCTGGCCAGGGAATTGCTGGAGAATATGCAGGCGAGGGCGGGGGGGAGGT
CGCACTTGAAGTTTGGTCTCTTCCTCGGGCACGACACGAGCGTGCTGCCC
CTGCTGGCAGCCTGGGGGGTGTGGGACGGCGCCTGGCCTCCCTACGCGGC
CGTTTTGGCGGTGGAGCTGTATGCAGCAGACGGGACTGGGCACGGTGGCG
TGGAAGGGGAGGGAAAGCACTTTTTTCGCATGCTGTATGGGGGGAGGGAG
CTGATATTGGAGGAGTGTCAAGGGGCTCGGCACGGGGGGGGGGAGCGTGT
GCCCGAGGAGGCCGAGCTCGAGGAGAAGGAAAGAGTACCGGGCGGTGGTA
ATGGCACAACGGAAAAGCGTGCGAAAGCCTTTGTAGGTTAG

protein sequence of rna4948

>rna4948-protein ID=rna4948-protein|Name=rna4948|organism=Nannochloropsis gaditana|type=polypeptide|length=595bp
MMCAPNSLGSKMVGLPGTIGSKGTPSVASRTQTLIGQCENLAQGGRAFVQ
QIQKMASMGLLDRRKMVDYVRIVSLFNQATGKDTSHGLLDLVYHLLTCMS
AGEDGGSSLSQIELLHTIGGGIGEIGGKGVRAVPGSSAATPPELDDLACY
IISRGGTGAESVFCSEAMKQLFISTDELTCTLKETGLTSVSVWASFTTPE
GLATLHRAAAAVLLQRDTSQVEVQVECVTRTDLLVACTGTLTFHVSEKGE
SSLVLCLAVKQDASPRAVGAPAKPRSDALLPAGEKSPPSSQRRSSSRRST
HAAERQAVLASRREQALQQQAKEQLQQQQQRHERASKRRRLPPTEAAPVS
PSSASPLHASSSSVCSTSSAASSTSTASSASLPASLAMPPATGTSSFSYR
PPPHRPFPSSMRRKTSFPVSWSARGPLLPAGLLRLMDSGAAPEPLPMGLL
PAGKEGFDASVDGERGRMEQGEQDGLSQGMVLARGLPEGVNYGRGGGEIF
TLNRHESGRGGMAATAPETSSRTTAMEEEKVPHANEGEEEDDGLWAWADS
IWEGAAPSLELGTDLAVSGAVGEGPGVSDVEDPSLWLMLDEGAME

mRNA from alignment at CM002464.1:738425..740212-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4948 ID=rna4948|Name=rna4948|organism=Nannochloropsis gaditana|type=mRNA|length=1788bp|location=Sequence derived from alignment at CM002464.1:738425..740212- (Nannochloropsis gaditana)
ATGATGTGTGCTCCCAACAGCCTTGGGAGTAAAATGGTGGGCTTGCCGGG
GACGATAGGAAGCAAAGGGACGCCAAGTGTGGCTTCCCGTACTCAAACTC
TGATAGGCCAGTGCGAGAATCTCGCCCAAGGCGGACGCGCATTTGTGCAG
CAAATTCAAAAGATGGCCTCCATGGGTTTGCTGGACCGAAGAAAGATGGT
GGACTACGTGCGCATCGTGTCCCTCTTCAATCAGGCAACAGGGAAGGACA
CCTCTCACGGCCTTCTGGACCTAGTCTATCACCTGTTAACGTGCATGTCA
GCAGGCGAGGACGGCGGATCTTCCCTGTCCCAAATCGAGCTCCTGCACAC
CATCGGTGGAGGAATTGGGGAGATAGGCGGGAAGGGCGTCCGGGCTGTCC
CGGGCTCAAGCGCCGCCACGCCCCCGGAGCTGGACGACTTGGCCTGCTAC
ATTATCTCGCGCGGAGGTACCGGGGCTGAGTCCGTCTTTTGCAGCGAGGC
GATGAAGCAGCTCTTCATATCTACGGATGAGCTCACGTGCACACTGAAAG
AAACCGGGCTGACTTCTGTCTCGGTGTGGGCGTCTTTCACCACGCCCGAG
GGCTTGGCCACCTTGCACCGGGCGGCAGCCGCCGTCCTTCTGCAGCGCGA
CACTTCCCAGGTGGAAGTGCAAGTAGAATGCGTGACGCGAACAGACCTCC
TGGTGGCCTGCACGGGGACCCTCACCTTCCACGTCTCTGAGAAGGGAGAG
AGCAGCCTCGTCCTGTGTCTGGCTGTCAAACAGGACGCGTCTCCGCGGGC
AGTGGGAGCCCCGGCCAAGCCTCGATCCGACGCCTTGCTGCCAGCGGGGG
AGAAAAGCCCCCCATCCTCGCAGAGAAGATCCAGTTCCAGGCGCAGCACT
CATGCTGCAGAGCGGCAGGCAGTCTTGGCCTCAAGGAGGGAGCAAGCCTT
GCAACAGCAAGCAAAAGAGCAGCTGCAGCAGCAACAGCAACGGCACGAAC
GGGCCTCCAAGCGCCGAAGATTGCCTCCCACCGAGGCGGCGCCCGTCTCT
CCTTCCTCCGCTTCCCCCCTGCACGCTTCATCATCCTCTGTCTGCTCGAC
CTCGAGCGCCGCCTCCTCCACCTCCACCGCCTCCTCCGCCTCCTTGCCCG
CGAGCTTGGCCATGCCCCCCGCCACTGGGACCTCCTCCTTTTCCTACCGC
CCACCCCCACATCGGCCTTTCCCTTCCTCGATGCGGCGCAAGACCTCGTT
CCCCGTGAGTTGGAGCGCTCGCGGGCCTCTGTTGCCGGCGGGACTGCTCC
GCCTCATGGACTCAGGGGCGGCTCCTGAGCCATTACCGATGGGGCTCCTG
CCCGCCGGGAAAGAAGGCTTCGATGCCTCCGTGGATGGAGAGAGGGGACG
GATGGAACAGGGGGAGCAGGACGGGTTGAGTCAGGGCATGGTCTTGGCGA
GGGGGTTGCCGGAAGGAGTGAACTATGGGCGCGGTGGGGGCGAGATCTTT
ACCTTGAATCGACATGAGTCAGGCCGTGGGGGCATGGCGGCGACGGCGCC
AGAGACCAGCTCCAGGACGACAGCCATGGAAGAGGAGAAGGTACCACATG
CGAATGAAGGGGAGGAGGAAGACGATGGCCTCTGGGCGTGGGCGGACTCC
ATCTGGGAGGGCGCCGCCCCTTCGTTGGAACTGGGCACGGACCTGGCGGT
GTCGGGAGCAGTCGGGGAGGGACCGGGGGTCTCAGACGTGGAAGATCCGA
GCCTCTGGTTGATGCTGGATGAGGGGGCAATGGAATGA

Coding sequence (CDS) from alignment at CM002464.1:738425..740212-

>rna4948 ID=rna4948|Name=rna4948|organism=Nannochloropsis gaditana|type=CDS|length=1788bp|location=Sequence derived from alignment at CM002464.1:738425..740212- (Nannochloropsis gaditana)
ATGATGTGTGCTCCCAACAGCCTTGGGAGTAAAATGGTGGGCTTGCCGGG
GACGATAGGAAGCAAAGGGACGCCAAGTGTGGCTTCCCGTACTCAAACTC
TGATAGGCCAGTGCGAGAATCTCGCCCAAGGCGGACGCGCATTTGTGCAG
CAAATTCAAAAGATGGCCTCCATGGGTTTGCTGGACCGAAGAAAGATGGT
GGACTACGTGCGCATCGTGTCCCTCTTCAATCAGGCAACAGGGAAGGACA
CCTCTCACGGCCTTCTGGACCTAGTCTATCACCTGTTAACGTGCATGTCA
GCAGGCGAGGACGGCGGATCTTCCCTGTCCCAAATCGAGCTCCTGCACAC
CATCGGTGGAGGAATTGGGGAGATAGGCGGGAAGGGCGTCCGGGCTGTCC
CGGGCTCAAGCGCCGCCACGCCCCCGGAGCTGGACGACTTGGCCTGCTAC
ATTATCTCGCGCGGAGGTACCGGGGCTGAGTCCGTCTTTTGCAGCGAGGC
GATGAAGCAGCTCTTCATATCTACGGATGAGCTCACGTGCACACTGAAAG
AAACCGGGCTGACTTCTGTCTCGGTGTGGGCGTCTTTCACCACGCCCGAG
GGCTTGGCCACCTTGCACCGGGCGGCAGCCGCCGTCCTTCTGCAGCGCGA
CACTTCCCAGGTGGAAGTGCAAGTAGAATGCGTGACGCGAACAGACCTCC
TGGTGGCCTGCACGGGGACCCTCACCTTCCACGTCTCTGAGAAGGGAGAG
AGCAGCCTCGTCCTGTGTCTGGCTGTCAAACAGGACGCGTCTCCGCGGGC
AGTGGGAGCCCCGGCCAAGCCTCGATCCGACGCCTTGCTGCCAGCGGGGG
AGAAAAGCCCCCCATCCTCGCAGAGAAGATCCAGTTCCAGGCGCAGCACT
CATGCTGCAGAGCGGCAGGCAGTCTTGGCCTCAAGGAGGGAGCAAGCCTT
GCAACAGCAAGCAAAAGAGCAGCTGCAGCAGCAACAGCAACGGCACGAAC
GGGCCTCCAAGCGCCGAAGATTGCCTCCCACCGAGGCGGCGCCCGTCTCT
CCTTCCTCCGCTTCCCCCCTGCACGCTTCATCATCCTCTGTCTGCTCGAC
CTCGAGCGCCGCCTCCTCCACCTCCACCGCCTCCTCCGCCTCCTTGCCCG
CGAGCTTGGCCATGCCCCCCGCCACTGGGACCTCCTCCTTTTCCTACCGC
CCACCCCCACATCGGCCTTTCCCTTCCTCGATGCGGCGCAAGACCTCGTT
CCCCGTGAGTTGGAGCGCTCGCGGGCCTCTGTTGCCGGCGGGACTGCTCC
GCCTCATGGACTCAGGGGCGGCTCCTGAGCCATTACCGATGGGGCTCCTG
CCCGCCGGGAAAGAAGGCTTCGATGCCTCCGTGGATGGAGAGAGGGGACG
GATGGAACAGGGGGAGCAGGACGGGTTGAGTCAGGGCATGGTCTTGGCGA
GGGGGTTGCCGGAAGGAGTGAACTATGGGCGCGGTGGGGGCGAGATCTTT
ACCTTGAATCGACATGAGTCAGGCCGTGGGGGCATGGCGGCGACGGCGCC
AGAGACCAGCTCCAGGACGACAGCCATGGAAGAGGAGAAGGTACCACATG
CGAATGAAGGGGAGGAGGAAGACGATGGCCTCTGGGCGTGGGCGGACTCC
ATCTGGGAGGGCGCCGCCCCTTCGTTGGAACTGGGCACGGACCTGGCGGT
GTCGGGAGCAGTCGGGGAGGGACCGGGGGTCTCAGACGTGGAAGATCCGA
GCCTCTGGTTGATGCTGGATGAGGGGGCAATGGAATGA

Synonyms

Publications