rna4938, rna4938 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4938
Unique Name	rna4938
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3159
Alignment location	CM002464.1:717141..719001 -

Link to JBrowse

Properties


Property Name	Value
Product	set domain protein
Orig transcript id	gnl\|cribi\|Naga_100162g14.1246.mrna
Orig protein id	gnl\|cribi\|Naga_100162g14.1246
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002464.1	supercontig	CM002464.1:717141..719001 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100162g14	gene4768	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25747.1	cds4926	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4938	rna4938-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002464.1:717141..719001-
coding sequence from alignment at CM002464.1:717141..719001-

mRNA sequence

>rna4938 ID=rna4938|Name=rna4938|organism=Nannochloropsis gaditana|type=mRNA|length=3159bp
CATGCTGTTATTGGCTCATAAAGTATCACCATACACAATTGATGACGGCG
AGCGACGAAGCCGAGGGAGTAATCGCACAGATGCAATGCCCGGGTCCAAG
CATCGGTGCACTTGAAGGACTCTGTTCGTAACGCCCGTCAGGACTCACTG
CCCCGTTCTCTTCCTGCCAACAGCCGATTTCGCCAGCTTGCACCTACCAA
TCTTCTCTTACGGCTTTTCTTGCAGGCGTTACACACTGAGTGGACATGGA
TAGTGTCGCGGAATGCGTTCGAAAGGATCGCGATTTTGTAATAACTCAGG
AGTCTACCTCCCCACTCAGGGCGTGCGATGCACGCCTTTCTTGTTCAGCT
CCTGCCGATCCTGAGTCTCACCCTCCACTGGAAGCGACGATTCGACGTCT
ATACTTTAACACTATTGCTCTAGCCCCCATGGTACGGGCCGGCACATTGC
CCTTGCGTGCGCTTGCCCTTTCTTACGGTTGTGATGTGGTGTACAGCGAG
GAAATAATCGACCGCAAGCTCATGCAATGCGTTCGCGAGGAGAACCGAGC
CTTGGGCACGATCGATTTCGTGACGACAGGGAATAGGAAAGGTGACTCTG
GTAAAGAGTCGCGCAGACTTGTCTTCCAAACAGTACCACAAGAAAAGCCC
CGGGTGGTTTTTCAACTGGGCACGCGTAACCCGGAATGGGCGGTCGAGGC
TGCCCGACTGGTGCAGCATGATGTGGCAGCCATCGATCTTAACATGGGAT
GTCCCAAAAAGTTTAGTATCCAAGACGGCATGGGCGCCGCCCTCTTGGAC
AACCCTGCGACCGCCGCCAGCCTAGTAAAAGCTCTACGTCAGGCCCTCCC
CCACAAGCCAGTCTCGTGCAAGATCCGATTGCTGGACGCCTCCCTCCCCA
TGACCAAGACCTTGGCCTTCGCGCGGGCCATGGAGGAAGCGGGCGCCTGT
GCGCTGAACGTGCATCTGAGAACGAAACAGGACAAGGCTTCGGACCCCGC
CCGGTGGGAGTTGCTGCGGCCTCTGGTGGCGGCGCTGGCAATCCCTGTCA
TCGCCAACGGGGACGTGTACCGGCAAGAGGACGTGGAGCAGTTGCTGGCC
GCCTCGCACTGCGCAGGGGTCATGCTTGCACGCCCAGTGTTGTACAACCC
GAGCCTGCTCCGGACGCTGCGATTCGTGAGTCCCTCCTGCGGAAGACCCG
TCCCCGGGGACAAATCTTCCGAGGATGCGATTTCTTCCACTGGGAGTTCG
CCTCCACTCCCTTTGCTTCCTCTAATGGACGTCATTCGCACCTACCTTCA
TCTGTGTTCGTGCTACGAAAGCCATGTGAGCAATGTCAAATACGTAGTTT
TGGAAATGATAGTACGTCGTCGACATCCCGAATACGTCAGGCGTCATCTC
GCCCCTCTTGAGCTGCCAGAGAATATAAATGTGGCCTCTGTCAGCAAGGC
AAAGACACTGCAGGCGTTGGGGACGCTCTTTGGGATTGAGGCGGGGGCGA
GCTCGGGATTGGAAGGTGTTCACTTGTGTTTGGACTCGTACTTTGATGCA
GAGCAGCTCGAGGGGACAAAATCTATGGTAAAAGGAAGGGACGGAGAGCC
TAGGGCCAATGCATCAGAAGAGCTTGGCGAGGGAAAGAGGCGAAAAATAC
GAGACGTACAATTTTTGAGAGCAGACTGTGAGATACCGGGCATGCAATGA
AAAATCGAAACTGTAGGGTATTAAAGATAATTGCAGACGGAGTTTCAGTT
TTTGCCGCGTAAACTGACGAAAAAAAACATACTGTTGTGAACGTTTGGTC
CGCCCCGCTCAAGCAAGGGACCTGATGTCGTGAGAGATCAGGATCGTACA
TGCCGGAGCGCAAAGCAGTGAAAGCCATGTCATAAATGGTCTCCCCGTGA
AATGCAGTTATACTTGGAACACGCTACAGAGTTTCTAAGTGCGGATTGCA
CGTCCAATTCTCGGGGAAGGGCGGCAGTACTTGCAGATAGCACTTGCGTT
CATGTCTCTTTTGAGCGATTGCGTGACGCCTCCGAATCGTTGGGTGCTTG
CTTCCCCGACATAATTCGAAAAGGTCACGTGCACCGTTTTTCGTGCATCG
AACGACGAAGAATTCTACAGGACAATCGAGAACGAAACTGTTCTTCAAAA
GGGAAATTATTTGTCGGGAAACTACGCCGATGCACATTTCTCTTGCCTAG
TTTCTCGGGCTTTAGAGTTGCTTCCCTCCAGGTCCAAACCCGTTGATAGC
GCGTAAAAAGCCTGCTGGTTGTGTGGTTTAATTGACAACAATAGTGCGGT
CCCACTCAAACACACAAATAGCTCATTTACGTTGTTTATGTCGCATGATG
TCGATGCATTTTTTACACCGACGCAGAGAAGGAGATCGAGAAAGGGGAGG
TTTAAGGGAGCAAAAGTAGAACAAGAGCAAGGCCACCGTCCCAACTCGTC
CAGCTAAATGGTCGTCGCACGTAGCAGTCTACTAATAGCTTCTGTCCTGT
TACTTGGAGGTGCTCCGCGGCCTGCTTTGTCGGCGTCCCAGTTTGCAACG
GTAGGGGCGCTTAGCCGCTTCATGAATCCGACGTGGAATGGATCCCCCAT
TGACTATTGTCTTCATTATGAGTTTGTGAATTATGGGCCCGACAACTCAC
TTGTCGCAAAGCATGGACATGATTGCGGAGAACCAGCAGCGAGCGAATTT
TGCGCAAGACAGGGATACAAGAGGGGAAGCGAGAATTTTACAGCTATATA
CTATTCGAGGAATGCAACCTATGTACTGGGCGATGATACCATCAATCCGA
TGGACATAAATATGGGAAAAGGAGAGCACACATTTTTCGACAAGATCATA
TGCAGGAGTAGCGAAGGGGGGGTAAGGTAGCACGAAAAGCAGGTCACTAA
AAAATGCGTCGAGAGTGTTTAGTATCATGCAAAGCGGGCGGATGCGAGGT
GTATTCCTATAAGATTGTTTGATAAAATGCTCGATATTTTTGCACTTTCA
TGCCTGGATTGCCGTAAGGAGGCAGAAGTCGTGCAAATAGTGTGTGAAGT
GGCCTGCCTCTCAAATGAAGCAGCTTCTATGACACAGATCTCTCTATCTC
AATAACTTTAGATAATCAAATAGGGGAGATACTGAAAATATGGATTCCCT
GGCCTCTTG

protein sequence of rna4938

>rna4938-protein ID=rna4938-protein|Name=rna4938|organism=Nannochloropsis gaditana|type=polypeptide|length=535bp
MAGHGDSQPENEGRSGCAKWWRGFIKKLRTILKGSLRLQQASDSPSIAVA
LSLDEVNSHIKSTLDVQSLHTSALFCFNQRKFIVESIGRSGVSAASIALL
LLPQTPPGEASGMRNVLRCAAQSLLPDAAGLLEWIEKRAGPNALGQKPPL
PFQTRVHGLGLKAPDRGYSAGDVVFSLPLEVWGPASAPFALEDSQASNSG
FFQALCDVDRDLGGGRQKLLGPVALAAHLSMALMDRDNIIHPFARFLKDI
DMQNTTHPLLLNAQELQYLQASPARGAVRKRQEVYGRIHHRLFASPSSPG
TASENKRSSIHIPKTTFFWAISRVLSRAVSGPRQPLSFLPFFDLMNHRRQ
SNCLYGLDEKTGTLVVRSSRPIRPGEELSLCYSDRKDNHQMLVTYGFVEA
GNPSGVTLRVDLPRDQTEQELGYGDQYVEMALKSNISMEQEAVLLEEAVN
ETCKRSRLSTGQALDVISHALNRGLELYDTSLERDLEALQSLEEEKWEAE
GRQAWRRTCLSLLVEEKTALRRGLKAVQNRKEKSR

mRNA from alignment at CM002464.1:717141..719001-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4938 ID=rna4938|Name=rna4938|organism=Nannochloropsis gaditana|type=mRNA|length=1861bp|location=Sequence derived from alignment at CM002464.1:717141..719001- (Nannochloropsis gaditana)
ATGGCTGGACATGGAGATTCGCAACCTGAAAATGAAGGGCGGAGTGGGTG
CGCGAAATGGTGGCGAGGGTTTATAAAAAAGCTTCGTACCATTCTTAAAG
GATCTCTCCGTCTGCAGCAAGCCTCCGACTCGCCGAGTATCGCTGTGGCC
CTATCGCTTGACGAAGTAAACAGCCACATAAAGTCAACCCTCGACGTACA
ATCTCTCCACACCAGTGCTCTCTTTTGTTTTAATCAACGAAAATTTATTG
TCGAGTCAATAGGACGATCTGGCGTCTCAGCTGCTTCTATTGCCTTGCTA
CTTCTTCCACAAACACCGCCCGGGGAGGCCTCTGGTATGCGAAATGTCCT
GCGTTGTGCGGCCCAGTCCCTCCTCCCAGACGCGGCAGGTCTATTAGAGT
GGATTGAAAAGCGTGCTGGCCCCAATGCTCTTGGGCAGAAACCACCACTT
CCCTTCCAGACGAGAGTGCATGGGTTGGGGCTGAAGGCACCTGATCGAGG
CTACTCAGCGGGAGATGTCGTTTTCAGCCTACCGCTAGAGGTGTGGGGAC
CAGCGTCGGCACCATTCGCACTCGAGGATAGTCAAGCTTCGAACTCTGGA
TTTTTCCAGGCGCTGTGTGACGTGGACAGAGACCTCGGGGGTGGGAGGCA
GAAGCTCCTGGGTCCTGTTGCCCTGGCTGCGCATCTGTCCATGGCATTGA
TGGACAGGGACAATATCATCCATCCCTTTGCGCGTTTCCTGAAAGATATA
GACATGCAAAATACGACGCACCCGTTGCTGCTCAATGCACAAGAACTGCA
GTACCTGCAGGCAAGTCCAGCGCGGGGGGCGGTGAGGAAGCGTCAAGAAG
TGTACGGGCGCATTCACCATCGTTTATTCGCAAGCCCATCTTCTCCTGGC
ACGGCGTCCGAAAACAAACGCTCGAGTATTCACATACCGAAAACCACCTT
CTTTTGGGCCATATCTCGGGTGCTTTCCCGCGCAGTATCCGGGCCTCGCC
AGCCCCTGTCCTTCCTGCCTTTCTTCGACCTGATGAATCATCGGCGCCAG
TCGAATTGTCTCTACGGCCTGGACGAAAAGACTGGTACGCTTGTTGTAAG
AAGCTCACGGCCGATAAGGCCAGGAGAAGAGCTGTCTCTGTGCTACAGTG
ACAGGAAGGACAATCACCAGATGCTTGTCACGTATGGATTCGTCGAGGCG
GGAAACCCCTCAGGCGTGACGCTTCGGGTCGATCTGCCTAGGGACCAGAC
AGAGCAGGAACTAGGGTATGGGGATCAATATGTTGAAATGGCGCTAAAGA
GCAATATTAGCATGGAACAGGAGGCTGTGCTGTTGGAAGAAGCGGTGAAT
GAGACCTGCAAGAGAAGCCGACTGTCGACAGGGCAGGCGTTGGATGTGAT
ATCACACGCATTGAACCGAGGCTTGGAGCTTTATGATACGTCCTTAGAGC
GTGATCTTGAGGCCCTGCAAAGCCTGGAAGAAGAGAAATGGGAGGCAGAG
GGGAGGCAAGCGTGGCGGCGAACATGTTTGTCTCTACTCGTAGAGGAGAA
GACAGCCTTGCGGCGAGGCCTGAAGGCCGTCCAAAATCGAAAAGAAAAGT
CTAGATAGATAAGAGCAAGGAGGTCAGAACAAGAGGCCAGGGAATCCATA
TTTTCAGTATCTCCCCTATTTGATTATCTAAAGTTATTGAGATAGAGAGA
TCTGTGTCATAGAAGCTGCTTCATTTGAGAGGCAGGCCACTTCACACACT
ATTTGCACGACTTCTGCCTCCTTACGGCAATCCAGGCATGAAAGTGCAAA
AATATCGAGCATTTTATCAAACAATCTTATAGGAATACACCTCGCATCCG
CCCGCTTTGCA

Coding sequence (CDS) from alignment at CM002464.1:717141..719001-

>rna4938 ID=rna4938|Name=rna4938|organism=Nannochloropsis gaditana|type=CDS|length=1608bp|location=Sequence derived from alignment at CM002464.1:717141..719001- (Nannochloropsis gaditana)
ATGGCTGGACATGGAGATTCGCAACCTGAAAATGAAGGGCGGAGTGGGTG
CGCGAAATGGTGGCGAGGGTTTATAAAAAAGCTTCGTACCATTCTTAAAG
GATCTCTCCGTCTGCAGCAAGCCTCCGACTCGCCGAGTATCGCTGTGGCC
CTATCGCTTGACGAAGTAAACAGCCACATAAAGTCAACCCTCGACGTACA
ATCTCTCCACACCAGTGCTCTCTTTTGTTTTAATCAACGAAAATTTATTG
TCGAGTCAATAGGACGATCTGGCGTCTCAGCTGCTTCTATTGCCTTGCTA
CTTCTTCCACAAACACCGCCCGGGGAGGCCTCTGGTATGCGAAATGTCCT
GCGTTGTGCGGCCCAGTCCCTCCTCCCAGACGCGGCAGGTCTATTAGAGT
GGATTGAAAAGCGTGCTGGCCCCAATGCTCTTGGGCAGAAACCACCACTT
CCCTTCCAGACGAGAGTGCATGGGTTGGGGCTGAAGGCACCTGATCGAGG
CTACTCAGCGGGAGATGTCGTTTTCAGCCTACCGCTAGAGGTGTGGGGAC
CAGCGTCGGCACCATTCGCACTCGAGGATAGTCAAGCTTCGAACTCTGGA
TTTTTCCAGGCGCTGTGTGACGTGGACAGAGACCTCGGGGGTGGGAGGCA
GAAGCTCCTGGGTCCTGTTGCCCTGGCTGCGCATCTGTCCATGGCATTGA
TGGACAGGGACAATATCATCCATCCCTTTGCGCGTTTCCTGAAAGATATA
GACATGCAAAATACGACGCACCCGTTGCTGCTCAATGCACAAGAACTGCA
GTACCTGCAGGCAAGTCCAGCGCGGGGGGCGGTGAGGAAGCGTCAAGAAG
TGTACGGGCGCATTCACCATCGTTTATTCGCAAGCCCATCTTCTCCTGGC
ACGGCGTCCGAAAACAAACGCTCGAGTATTCACATACCGAAAACCACCTT
CTTTTGGGCCATATCTCGGGTGCTTTCCCGCGCAGTATCCGGGCCTCGCC
AGCCCCTGTCCTTCCTGCCTTTCTTCGACCTGATGAATCATCGGCGCCAG
TCGAATTGTCTCTACGGCCTGGACGAAAAGACTGGTACGCTTGTTGTAAG
AAGCTCACGGCCGATAAGGCCAGGAGAAGAGCTGTCTCTGTGCTACAGTG
ACAGGAAGGACAATCACCAGATGCTTGTCACGTATGGATTCGTCGAGGCG
GGAAACCCCTCAGGCGTGACGCTTCGGGTCGATCTGCCTAGGGACCAGAC
AGAGCAGGAACTAGGGTATGGGGATCAATATGTTGAAATGGCGCTAAAGA
GCAATATTAGCATGGAACAGGAGGCTGTGCTGTTGGAAGAAGCGGTGAAT
GAGACCTGCAAGAGAAGCCGACTGTCGACAGGGCAGGCGTTGGATGTGAT
ATCACACGCATTGAACCGAGGCTTGGAGCTTTATGATACGTCCTTAGAGC
GTGATCTTGAGGCCCTGCAAAGCCTGGAAGAAGAGAAATGGGAGGCAGAG
GGGAGGCAAGCGTGGCGGCGAACATGTTTGTCTCTACTCGTAGAGGAGAA
GACAGCCTTGCGGCGAGGCCTGAAGGCCGTCCAAAATCGAAAAGAAAAGT
CTAGATAG

Synonyms

Publications