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Properties
| Property Name | Value |
|---|
| Product | trna-dihydrouridine synthase 2 |
| Orig transcript id | gnl|cribi|Naga_100162g12.1257.mrna |
| Orig protein id | gnl|cribi|Naga_100162g12.1257 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002464.1 | supercontig | CM002464.1:713878..717372 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna4937 ID=rna4937|Name=rna4937|organism=Nannochloropsis gaditana|type=mRNA|length=1268bp
GGGGGGGAAAGGGAGAGCGCAGAGCGCAGAGGAAAGGGAAAGAAGCTTCA
ACGAGTGCGCCACGCCACACACACTGAAAATGCACATTGTACGCACCTAG
AGCAATAGTGTTAAAGTATAGACGTCGAATCGTCGCTTCCAGTGGAGGGT
GAGACTCAGGATCGGCAGGAGCTGAACAAGAAAGGCGTGCATCGCACGCC
CTGAGTGGGGAGGTAGACTCCTGAGTTATTACAAAATCGCGATCCTTTCG
AACGCATTCCGCGACACTATCCATGTCCACTCAGTGTGTAACGCCTGCAA
GAAAAGCCGTAAGAGAAGATTGGTAGGTGCAAGCTGGCGAAATCGGCTGT
TGGCAGGAAGAGAACGGGGCAGTGAGTCCTGACGGGCGTTACGAACAGAG
TCCTTCAAGTGCACCGATGCTTGGACCCGGGCATTGCATCTGTGCGATTA
CTCCCTCGGCTTCGTCGCTCGCCGTCATCAATTGTGTATGGTGATACTTT
ATGAGCCAATAACAGCATGTTCCGCGCACATTTGTTTCAGTTGGGCTTAC
GCCTTCACACAATGCTTTCTCCATCCAGGGGAGATGCCAAATTCAGGCCC
CACTGAAGAGGAAGACTTGGATGTACCCGAGCCAATTCCACACGAGCGAG
CGGTGACTGAGGTATACTTGCATGCCATGACCAGGGGTGCGCAGGCAGGG
TCCATTTTAGTGTCTGTTCTGGCAGTACCTGTCTGTTGGAAGCGGGGACT
GAGGGGTAGACTTCTGTTGGGACGCTTGGGTCAAATTTCCTTGGTTGGAA
GCGTTTTAGGCGGTGCAATCATGGCAATGGGGACAAACCAGAAGCTGAAA
GAATCGGGAGCATGGGGCGCTTATGATCGTGCGTACAGACTGCGGAACAA
CGCGGGGCAGAAGACCCTTGACGCACTAAGCTACACGACCGCCGCGGTCG
GGCTCTTCGCCGGCACGGTGCTCTTGAACAAAGGTCTCTACGGTGGCTTG
CTTGGTGCCAGCTCAGGGCTGTCCCTAGGTGTCCTGGAGTATGTCGGACT
TACCATGTACCAAAATGTCGGCCTGACAGTATACGAGAGATACTCTGGGA
GGGCGGGCACGCACGGTAATTTAAAAAAGGACTGAAGGGGGCGAAGGCTC
AAAAAGGAATGAAAATGAACTGAGGTGATCGATTGAATCGATGTGAATTC
ACAACTAGGCGGGTTGTGGACGCTTCGTTTATCTGTTCTTGTCGGGTCTC
CGCTCGACCCAGTACCAA back to topprotein sequence of rna4937 >rna4937-protein ID=rna4937-protein|Name=rna4937|organism=Nannochloropsis gaditana|type=polypeptide|length=484bp
MDSVAECVRKDRDFVITQESTSPLRACDARLSCSAPADPESHPPLEATIR
RLYFNTIALAPMVRAGTLPLRALALSYGCDVVYSEEIIDRKLMQCVREEN
RALGTIDFVTTGNRKGDSGKESRRLVFQTVPQEKPRVVFQLGTRNPEWAV
EAARLVQHDVAAIDLNMGCPKKFSIQDGMGAALLDNPATAASLVKALRQA
LPHKPVSCKIRLLDASLPMTKTLAFARAMEEAGACALNVHLRTKQDKASD
PARWELLRPLVAALAIPVIANGDVYRQEDVEQLLAASHCAGVMLARPVLY
NPSLLRTLRFVSPSCGRPVPGDKSSEDAISSTGSSPPLPLLPLMDVIRTY
LHLCSCYESHVSNVKYVVLEMIVRRRHPEYVRRHLAPLELPENINVASVS
KAKTLQALGTLFGIEAGASSGLEGVHLCLDSYFDAEQLEGTKSMVKGRDG
EPRANASEELGEGKRRKIRDVQFLRADCEIPGMQ back to topmRNA from alignment at CM002464.1:713878..717372+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna4937 ID=rna4937|Name=rna4937|organism=Nannochloropsis gaditana|type=mRNA|length=3495bp|location=Sequence derived from alignment at CM002464.1:713878..717372+ (Nannochloropsis gaditana)
CATGCTGTTATTGGCTCATAAAGTATCACCATACACAATTGATGACGGCG
AGCGACGAAGCCGAGGGAGTAATCGCACAGATGCAATGCCCGGGTCCAAG
CATCGGTGCACTTGAAGGACTCTGTTCGTAACGCCCGTCAGGACTCACTG
CCCCGTTCTCTTCCTGCCAACAGCCGATTTCGCCAGCTTGCACCTACCAA
TCTTCTCTTACGGCTTTTCTTGCAGGCGTTACACACTGAGTGGACATGGA
TAGTGTCGCGGAATGCGTTCGAAAGGATCGCGATTTTGTAATAACTCAGG
AGTCTACCTCCCCACTCAGGGCGTGCGATGCACGCCTTTCTTGTTCAGCT
CCTGCCGATCCTGAGTCTCACCCTCCACTGGAAGCGACGATTCGACGTCT
ATACTTTAACACTATTGCTCTAGGTGCGTACAATGTGCATTTTCAGTGTG
TGTGGCGTGGCGCACTCGTTGaagcttctttccctttcctctgcGCTCTg
cgctctccctttcccccccactaCTAGCCCCCATGGTACGGGCCGGCACA
TTGCCCTTGCGTGCGCTTGCCCTTTCTTACGGTTGTGATGTGGTGTACAG
CGAGGAAATAATCGACCGCAAGCTCATGCAATGCGTTCGCGAGGAGAACC
GAGCCTTGGGCACGATCGATTTCGTGACGACAGGGAATAGGAAAGGTGAC
TCTGGTAAAGAGTCGCGCAGACTTGTCTTCCAAACAGTACCACAAGAAAA
GCCCCGGGTGGTTTTTCAACTGGGCACGCGTAACCCGGAATGGGCGGTCG
AGGCTGCCCGACTGGTGCAGCATGATGTGGCAGCCATCGATCTTAACATG
GtaggtaggggaggaaaggtttAAAAACAGGGGAGGAGTGCAATCAAAGC
GAGGCTAGCACTTGTATGGTTGTTCATGTAGGTGTGTGGGCCATGCTGCA
TTCGTTCCTCTTCGTTGTAAGGTATCGGTTGTTTTGATCGTTGACGGCCC
TACCGGTGCTATTTCACACGAGAGCCGGGAGGGTCAGCACAGCTTTCGCC
TTTTTAATAGTCTGTCTTTTTCTCATGGACAGGGATGTCCCAAAAAGTTT
AGTATCCAAGACGGCATGGGCGCCGCCCTCTTGGACAACCCTGCGACCGC
CGCCAGCCTAGTAAAAGCTCTAcgtcaggccctcccccacaaGCCAGTCT
CGTGCAAGATCCGATTGCtggacgcctccctccccatgacCAAGACCTTG
GCCTTCGCGcgggccatggaggaagcgggcgccTGTGCGCTGAACGTGCA
TCTGAGAACGAAACAGGACAAGGCTTCGGACCCCGCCCGGTGGGAGTTGC
TGCGGCCTCTGGTGGCGGCGCTGGCAATCCCTGTCATCGCCAACGGGGAC
GTGTACCGGCAAGAGGACGTGGAGCAGTTGCTGGCCGCCTCGCACTGCGC
AGGGGTCATGCTTGCACGCCCAGTGTTGTACAACCCGAGCCTGCTCCGGA
CGCTGCGATTCGTGAGTCCCTCCTGCGGAAGACCCGTCCCCGGGGACAAA
TCTTCCGAGGATGCGATTTCTTCCACTGGGAGTtcgcctccactcccttt
gcttcctctAATGGACGTCATTCGCACCTACCTTCATCTGTGTTCGTGCT
ACGAAAGCCATGTGAGCAATGTCAAATACGTAGTTTTGGAAATGATAGTA
CGTCGTCGACATCCCGAATACGTCAGGCGTCATCTCGCCCCTCTTGAGCT
GCCAGAGAATATAAATGTGGCCTCTGTCAGCAAGGCAAAGACACTGCAGG
CGTTGGGGACGCTCTTTGGGAttgaggcgggggcgagctCGGGATTGGAA
GGTGTTCACTTGTGTTTGGACTCGTACTTTGATGCAGAGCAGCTCGAGGG
GACAAAATCTATGGtaaaaggaagggacggagagcCTAGGGCCAATGCAT
CAGAAGAGCTTggcgagggaaagaggcgaaaAATACGAGACGTACAATTT
TTGAGAGCAGACTGTGAGATACCGGGCATGCAATGAAAAATCGAAACTGT
AGGGTATTAAAGATAATTGCAGACGGAGTTTCAGTTTTTGCCGCGTAAAC
TGACGAAAAAAAACATACTGTTGTGAACGTTTGGTCCGCCCCGCTCAAGC
AAGGGACCTGATGTCGTGAGAGATCAGGATCGTACATGCCGGAGCGCAAA
GCAGTGAAAGCCATGTCATAAATGGTCTCCCCGTGAAATGCAGTTATACT
TGGAACACGCTACAGAGTTTCTAAGTGCGGATTGCACGTCCAATTCtcgg
ggaagggcggcagTACTTGCAGATAGCACTTGCGTTCATGTCTCTTTTGA
GCGATTGCGTGACGCCTCCGAATCGTTGGGTGCTTGCTTCCCCGACATAA
TTCGAAAAGGTCACGTGCACCGTTTTTCGTGCATCGAACGACGAAGAATT
CTACAGGACAATCGAGAACGAAACTGTTCTTCAAAAGGGAAATTATTTGT
CGGGAAACTACGCCGATGCACATTTCTCTTGCCTAGTTTCTCGGGCTTTA
GAGTTGCTTCCCTCCAGGTCCAAACCCGTTGATAGCGCGTAAAAAGCCTG
CTGGTTGTGTGGTTTAATTGACAACAATAGTGCGGTCCCACTCAAACACA
CAAATAGCTCATTTACGTTGTTTATGTCGCATGATGTCGATGCATTTTTT
ACACCgacgcagagaaggagatcgagaaaggggaggttTAAGGGAGCAAA
AGTAGAACAAGAGCAAGGCCACCGTCCCAACTCGTCCAGCTAAATGGTCG
TCGCACGTAGCAGTCTACTAATAGCTTCTGTCCTGTTACTTGGAGGTGCT
CCGCGGCCTGCTTTGTCGGCGTCCCAGTTTGCAACGGTAGGGGCGCTTAG
CCGCTTCATGAATCCGACGTGGAATGGATCCCCCATTGACTATTGTCTTC
ATTATGAGTTTGTGAATTATGGGCCCGACAACTCACTTGTCGCAAAGCAT
GGACATGATTGCGGAGAACCAGCAGCGAGCGAATTTTGCGCAAGACAGGG
ATACAAGAGGGGAAGCGAGAATTTTACAGCTATATACTATTCGAGGAATG
CAACCTATGTACTGGGCGATGATACCATCAATCCGATGGACATAAAtatg
ggaaaaggagagcacACATTTTTCGACAAGATCATATGCAGGAGTAGCGA
AGGGGGGGTAAGGTAGCACGAAAAGCAGGTCACTAAAAAATGCGTCGAGA
GTGTTTAGTATCATGCAAAGCGGGCGGATGCGAGGTGTATTCCTATAAGA
TTGTTTGATAAAATGCTCGATATTTTTGCACTTTCATGCCTGGATTGCCG
TAAGGAGGCAGAAGTCGTGCAAATAGTGTGTGAAGTGGCCTGCCTCTCAA
ATGAAGCAGCTTCTATGACACAGATCTCTCTATCTCAATAACTTTAGATA
ATCAAATAGGGGAGATACTGAAAATATGGATTCCCTGGCCTCTTG back to topCoding sequence (CDS) from alignment at CM002464.1:713878..717372+ >rna4937 ID=rna4937|Name=rna4937|organism=Nannochloropsis gaditana|type=CDS|length=4365bp|location=Sequence derived from alignment at CM002464.1:713878..717372+ (Nannochloropsis gaditana)
ATGGATAGTGTCGCGGAATGCGTTCGAAAGGATCGCGATTTTGTAATAAC
TCAGGAGTCTACCTCCCCACTCAGGGCGTGCGATGCACGCCTTTCTTGTT
CAGCTCCTGCCGATCCTGAGTCTCACCCTCCACTGGAAGCGACGATTCGA
CGTCTATACTTTAACACTATTGCTCTAGCCCCCATGGTACGGGCCGGCAC
ATTGCCCTTGCGTGCGCTTGCCCTTTCTTACGGTTGTGATGTGGTGTACA
GCGAGGAAATAATCGACCGCAAGCTCATGCAATGCGTTCGCGAGGAGAAC
CGAGCCTTGGGCACGATCGATTTCGTGACGACAGGGAATAGGAAAGGTGA
CTCTGGTAAAGAGTCGCGCAGACTTGTCTTCCAAACAGTACCACAAGAAA
AGCCCCGGGTGGTTTTTCAACTGGGCACGCGTAACCCGGAATGGGCGGTC
GAGGCTGCCCGACTGGTGCAGCATGATGTGGCAGCCATCGATCTTAACAT
GGGATGTCCCAAAAAGTTTAGTATCCAAGACGGCATGGGCGCCGCCCTCT
TGGACAACCCTGCGACCGCCGCCAGCCTAGTAAAAGCTCTAcgtcaggcc
ctcccccacaaGCCAGTCTCGTGCAAGATCCGATTGCtggacgcctccct
ccccatgacCAAGACCTTGGCCTTCGCGcgggccatggaggaagcgggcg
ccTGTGCGCTGAACGTGCATCTGAGAACGAAACAGGACAAGGCTTCGGAC
CCCGCCCGGTGGGAGTTGCTGCGGCCTCTGGTGGCGGCGCTGGCAATCCC
TGTCATCGCCAACGGGGACGTGTACCGGCAAGAGGACGTGGAGCAGTTGC
TGGCCGCCTCGCACTGCGCAGGGGTCATGCTTGCACGCCCAGTGTTGTAC
AACCCGAGCCTGCTCCGGACGCTGCGATTCGTGAGTCCCTCCTGCGGAAG
ACCCGTCCCCGGGGACAAATCTTCCGAGGATGCGATTTCTTCCACTGGGA
GTtcgcctccactccctttgcttcctctAATGGACGTCATTCGCACCTAC
CTTCATCTGTGTTCGTGCTACGAAAGCCATGTGAGCAATGTCAAATACGT
AGTTTTGGAAATGATAGTACGTCGTCGACATCCCGAATACGTCAGGCGTC
ATCTCGCCCCTCTTGAGCTGCCAGAGAATATAAATGTGGCCTCTGTCAGC
AAGGCAAAGACACTGCAGGCGTTGGGGACGCTCTTTGGGAttgaggcggg
ggcgagctCGGGATTGGAAGGTGTTCACTTGTGTTTGGACTCGTACTTTG
ATGCAGAGCAGCTCGAGGGGACAAAATCTATGGtaaaaggaagggacgga
gagcCTAGGGCCAATGCATCAGAAGAGCTTggcgagggaaagaggcgaaa
AATACGAGACGTACAATTTTTGAGAGCAGACTGTGAGATACCGGGCATGC
AATGAATGGATAGTGTCGCGGAATGCGTTCGAAAGGATCGCGATTTTGTA
ATAACTCAGGAGTCTACCTCCCCACTCAGGGCGTGCGATGCACGCCTTTC
TTGTTCAGCTCCTGCCGATCCTGAGTCTCACCCTCCACTGGAAGCGACGA
TTCGACGTCTATACTTTAACACTATTGCTCTAGCCCCCATGGTACGGGCC
GGCACATTGCCCTTGCGTGCGCTTGCCCTTTCTTACGGTTGTGATGTGGT
GTACAGCGAGGAAATAATCGACCGCAAGCTCATGCAATGCGTTCGCGAGG
AGAACCGAGCCTTGGGCACGATCGATTTCGTGACGACAGGGAATAGGAAA
GGTGACTCTGGTAAAGAGTCGCGCAGACTTGTCTTCCAAACAGTACCACA
AGAAAAGCCCCGGGTGGTTTTTCAACTGGGCACGCGTAACCCGGAATGGG
CGGTCGAGGCTGCCCGACTGGTGCAGCATGATGTGGCAGCCATCGATCTT
AACATGGGATGTCCCAAAAAGTTTAGTATCCAAGACGGCATGGGCGCCGC
CCTCTTGGACAACCCTGCGACCGCCGCCAGCCTAGTAAAAGCTCTAcgtc
aggccctcccccacaaGCCAGTCTCGTGCAAGATCCGATTGCtggacgcc
tccctccccatgacCAAGACCTTGGCCTTCGCGcgggccatggaggaagc
gggcgccTGTGCGCTGAACGTGCATCTGAGAACGAAACAGGACAAGGCTT
CGGACCCCGCCCGGTGGGAGTTGCTGCGGCCTCTGGTGGCGGCGCTGGCA
ATCCCTGTCATCGCCAACGGGGACGTGTACCGGCAAGAGGACGTGGAGCA
GTTGCTGGCCGCCTCGCACTGCGCAGGGGTCATGCTTGCACGCCCAGTGT
TGTACAACCCGAGCCTGCTCCGGACGCTGCGATTCGTGAGTCCCTCCTGC
GGAAGACCCGTCCCCGGGGACAAATCTTCCGAGGATGCGATTTCTTCCAC
TGGGAGTtcgcctccactccctttgcttcctctAATGGACGTCATTCGCA
CCTACCTTCATCTGTGTTCGTGCTACGAAAGCCATGTGAGCAATGTCAAA
TACGTAGTTTTGGAAATGATAGTACGTCGTCGACATCCCGAATACGTCAG
GCGTCATCTCGCCCCTCTTGAGCTGCCAGAGAATATAAATGTGGCCTCTG
TCAGCAAGGCAAAGACACTGCAGGCGTTGGGGACGCTCTTTGGGAttgag
gcgggggcgagctCGGGATTGGAAGGTGTTCACTTGTGTTTGGACTCGTA
CTTTGATGCAGAGCAGCTCGAGGGGACAAAATCTATGGtaaaaggaaggg
acggagagcCTAGGGCCAATGCATCAGAAGAGCTTggcgagggaaagagg
cgaaaAATACGAGACGTACAATTTTTGAGAGCAGACTGTGAGATACCGGG
CATGCAATGAATGGATAGTGTCGCGGAATGCGTTCGAAAGGATCGCGATT
TTGTAATAACTCAGGAGTCTACCTCCCCACTCAGGGCGTGCGATGCACGC
CTTTCTTGTTCAGCTCCTGCCGATCCTGAGTCTCACCCTCCACTGGAAGC
GACGATTCGACGTCTATACTTTAACACTATTGCTCTAGCCCCCATGGTAC
GGGCCGGCACATTGCCCTTGCGTGCGCTTGCCCTTTCTTACGGTTGTGAT
GTGGTGTACAGCGAGGAAATAATCGACCGCAAGCTCATGCAATGCGTTCG
CGAGGAGAACCGAGCCTTGGGCACGATCGATTTCGTGACGACAGGGAATA
GGAAAGGTGACTCTGGTAAAGAGTCGCGCAGACTTGTCTTCCAAACAGTA
CCACAAGAAAAGCCCCGGGTGGTTTTTCAACTGGGCACGCGTAACCCGGA
ATGGGCGGTCGAGGCTGCCCGACTGGTGCAGCATGATGTGGCAGCCATCG
ATCTTAACATGGGATGTCCCAAAAAGTTTAGTATCCAAGACGGCATGGGC
GCCGCCCTCTTGGACAACCCTGCGACCGCCGCCAGCCTAGTAAAAGCTCT
AcgtcaggccctcccccacaaGCCAGTCTCGTGCAAGATCCGATTGCtgg
acgcctccctccccatgacCAAGACCTTGGCCTTCGCGcgggccatggag
gaagcgggcgccTGTGCGCTGAACGTGCATCTGAGAACGAAACAGGACAA
GGCTTCGGACCCCGCCCGGTGGGAGTTGCTGCGGCCTCTGGTGGCGGCGC
TGGCAATCCCTGTCATCGCCAACGGGGACGTGTACCGGCAAGAGGACGTG
GAGCAGTTGCTGGCCGCCTCGCACTGCGCAGGGGTCATGCTTGCACGCCC
AGTGTTGTACAACCCGAGCCTGCTCCGGACGCTGCGATTCGTGAGTCCCT
CCTGCGGAAGACCCGTCCCCGGGGACAAATCTTCCGAGGATGCGATTTCT
TCCACTGGGAGTtcgcctccactccctttgcttcctctAATGGACGTCAT
TCGCACCTACCTTCATCTGTGTTCGTGCTACGAAAGCCATGTGAGCAATG
TCAAATACGTAGTTTTGGAAATGATAGTACGTCGTCGACATCCCGAATAC
GTCAGGCGTCATCTCGCCCCTCTTGAGCTGCCAGAGAATATAAATGTGGC
CTCTGTCAGCAAGGCAAAGACACTGCAGGCGTTGGGGACGCTCTTTGGGA
ttgaggcgggggcgagctCGGGATTGGAAGGTGTTCACTTGTGTTTGGAC
TCGTACTTTGATGCAGAGCAGCTCGAGGGGACAAAATCTATGGtaaaagg
aagggacggagagcCTAGGGCCAATGCATCAGAAGAGCTTggcgagggaa
agaggcgaaaAATACGAGACGTACAATTTTTGAGAGCAGACTGTGAGATA
CCGGGCATGCAATGA back to top
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