rna4929, rna4929 (mRNA) Nannochloropsis gaditana

Overview
Namerna4929
Unique Namerna4929
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2116
Alignment locationCM002464.1:692169..695187 +

Link to JBrowse

Properties
Property NameValue
ProductConserved oligomeric Golgi complex, subunit 4
Orig transcript idgnl|cribi|Naga_100162g3.1250.mrna
Orig protein idgnl|cribi|Naga_100162g3.1250
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:692169..695187 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100162g3gene4759Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4929rna4929-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25751.1cds4917Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4929 ID=rna4929|Name=rna4929|organism=Nannochloropsis gaditana|type=mRNA|length=2116bp
CGTTCGGATAAAAATGAAGAGTGGGACATCCGGGCACAAGAACGCGTCTG
AATCAACCCCGTTGTACTACTTCTCTGCGGACAGGGGGAAATTAATGAGA
ATGCGAGCCGTTGCGGAGGCATGACTTGCAGCTCAACGCGCTATTTTCCT
GGCAGAGGAAACCACGCTCTACCCCGAGGGCCTGCTCAGGGACGTCATGC
TACGCCGGTAGGAACCGGGAAAAAAACTTCTCTGCGATCACTCTTGGTCG
TCAAGAATATCATGCTCGTGGCATGTTCTTTTTCACCTCCTCAAGATGGC
AGACTTGCCATGTTATCGGCGTCATCTTTTCTACCTCCCCCCCTCCCACG
CGTCGGTACGAGCCGGCCCGACCAATTACTTGTCACGCGAACCAGGTCAT
CGACAAGAATTTCCAGCTCTTTTCACAACAGCTTTCGTACGATCGTCCCT
ATCACTCCTCGCCCCGATGCTTGCCGCATCCACCCCGCTGATCAAGTATT
TTTCATCGGTTCCTGCTTTTCGGACACCATGGGCAACACACTCAAAGAGA
AGCTGAAAATGAAAGTGGAGGTTAATCCGTTCGGCACTTCGTATAACCCC
GTTTCAATCGCACGTTGCCTGCATCGCCTCGCAACAGGCCGTCTCTTCGA
CCAAGAGGAGCTCCTGAGGCATCCGCAGGACGGACGATGGATCAGCCTCG
AGCACCACTCAGGCTTCAGCGATCGGGACCGCTCGAATGCCCTGGCAGGT
ATCAATGCACGTTTAATGGCGGGCCGCGCGTTCTTACGCGGGGCGCAACA
CGTCTTTGTGACTCTTGGAACGGCTCATGCGTATGTTTACTTCAAAAAAA
CGGATGAACTGGATAAACAGAGAGAAGAAGGGGAGGGATGCAACGGGGAA
GAGAGCAAAGCAGACGGGGCTGAGGGAATAGAGGGGCGTGAGGAAAAGCA
GCAACTGAGGGCAAGAGGAGCGAACGATGGTGGACAAATTGTCGCCAATT
GCCATCGGCTTCCCGCTGCATGCTTTCGGCGCGAGCTGTTAGACCCTCCT
CGCATAGTCCAGGCACTCCATCAAACTGTGGAGTCGATTAGGTGTCTGAA
TACTCATTGCACTATCAGCTTCACCGTCTCTCCGGTTCGCCACATCCGAA
ACGCCGGCGGTGAGGCAGGTGTGTATGCTCGGAGGGACGGCGTGGTGTGC
GGTGAGATGGCTTATCACACAGCTGCGCTTTTAAACGAAGCGGGCCGATT
GATATGTGTGTGTGAATTTTCGTTACGTGTCAATGCATCGAAAGTGTTCG
TCCCCGCTGTCGTCGCGTATTTTGGGATGAGTGTTCTTCATCCACTCATC
ATGTTTCCCTTTCTCATTTTTACAAGTACAAAGCGCCCGCAGCAAGGCCC
ACCTTCTCGCCGCTGTTCATGAATTCTTGGACAAAGAAAAGACGTCTTCA
TCCCCGAGCTCTACCTCGTCATTAAAAGCCCCTCTTTTGTCCTATTTCCC
TGCGTACGAGATCATGATGGATGACCTCCGAGATTACCGCTTCTATGCCA
CGGATATGCTCCATCCTTCTCCCCTCGCACTCGACTACATTTATACTCGC
TTTGTCGACACGTATTTCGACAACTCTTCGTCATCAGTCCGATTCAAAAA
AGAGATGGAAGGCTTGCAGCGTAATCTCTTGCATCGACCCCTTGACGAGG
CAAGCTCCGCCCATCAAACATTTTTGAAGAAGCAGCTGAAGGAAATGAAA
AAAATGCAGGCGGAGTGGCCACACTTAGACTTTACTGATGAGCGCCTACT
CATTGAGAAGAAACTTTACTCGTTGTAAATTCGACATTTAAAGTTATGTG
CATCTGCCAGAATTGTTTATGCGGCATATTACGCAACCTCTCGTTTGAAG
GAATTCTCGGTCAAGCACGAAGATGCAAGGAAAGTAGCTCTAAGCACAAA
ATAACTCATTAATTACTGTGTTCGTGGTATCGTTCATCCATCGCGACGTT
CAAGCAAGCCTGATCCCGTTCGTTCGAGTCGGCGTCCGTTTCCAACCTCC
TACTTCCCGATTTAAACCGTACCGCCGGGCATTTGAGCGGTCACGCTGGT
ATTAAACAGGACCCTG
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protein sequence of rna4929

>rna4929-protein ID=rna4929-protein|Name=rna4929|organism=Nannochloropsis gaditana|type=polypeptide|length=954bp
MYPVCPTTTSSPVLTRCAVSDPHSAHSVPMAADRDDHSLVESEGRATAAL
PIGDPASEAAAAGTGPCNEEFQELLESLHNELDEVTKKKASVEAALGDEL
DSLLIVEATKAVPAPDGKQLALQMKDLEKAFAPTRVAHLTAKVSALTEHV
YGCQELADKMSSSVRELDERQMRVQRVLAMVEDIINLKTCAEGVARALEE
DDLLGATSYVRQFHSIEGASAKASGHYNVLVAAEARLKETVLRRVHLAVS
RSELDDVFKFCPLLGPLGLAKEGASIYESFAERLLKEGLDPLAAETNKLP
AVQLLPKIYNTAAGFLQRHLPLVSHGFKQVDADVSLIRLVQRECEDAAIP
VIRRFLEDKGVAEKCRAVAEASRGDNGLDGGAFYARKEGGHRRRGAQASG
GEGEEALPIGEMDGLMDALALVIQHTESYDRFLRHVAAEILETGRDLGAP
VLPAVTDLNGAVAEVAGPFALLEDYVMRASIAKALQIDELPALAPLSLVQ
AGTSLVASGAGIASIGEGDDLLLSTGRGDSPLTSSAVDDSFYVLRRCARR
ALVTGHAGTASAIINYINGALSDELMSVLSAKVRSLRELPLPIGLLPAAS
SLGAPVAGTAVVAVKQHWSKVKEGIGAGLETAQQLTAAAGSLMGGAAGVG
LGGGGLGAVTCYPYEEAKNALDRLVMLNNLSACARYTLKLQQELMAEVPS
IFQDDPPTQQLMACLQDMSVTAKHFEQTVDEGLQHVAALIKPKLRSFLQD
ALGVAQAVGKGQGGDAGQGGARGGSKVSYELDEDEFAANEAADPFMNRFL
EFLGGLLGPISLRLTGRNFSVLKMSVVAYMAKRLEYLLMRLPFTQLGALQ
LDKDLRCLIAFFPSSTGYGDYSETGQESGRVRDCFARLMQMSHLLNLDVP
TDIVDVFGGNSMKLTVEEALNIMRLRTDWEEVEICKAQEHLLMTLSNGIS
SDTL
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mRNA from alignment at CM002464.1:692169..695187+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4929 ID=rna4929|Name=rna4929|organism=Nannochloropsis gaditana|type=mRNA|length=3019bp|location=Sequence derived from alignment at CM002464.1:692169..695187+ (Nannochloropsis gaditana)
ACAACGGGGTTGATTCAGACGCGTTCTTGTGCCCGGATGTCCCACTCTTC ATTTTTATCCGAACGCCGGCCCCCGTCGGCCCTCTCGCTGATTAAATTCC ATCCCCTTCAGACCAATGTACCCGGTCTGTCCCACCACAACCTCGAGCCC CGTCCTCACCCGCTGTGCGGTCTCCGACCCCCATTCTGCACACAGCGTGC CCATGGCAGCAGACAGAGACGACCACTCCTTGGTGGAAAGTGAAGGTCGG gccaccgccgccctccctatTGGGGACCCCGCGAGCGAggccgcagcagc cggaACAGGACCCTGCAACGAGGAGTTTCAAGAGCTACTAGAAAGCCTCC ACAATGAATTGGATGAGGTCACAAAGAAGAAGGCCTCAGTGGAGGCTGCT TTAGGCGATGAATTGGATTCGTTGCTTATCGTCGAGGCAACTAAGGCAGT GCCTGCCCCGGATGGAAAGCAACTCGCCCTTCAAATGAAGGACTTGGAGA AAGCTTTTGCACCCACCAGGGTGGCCCACCTGACTGCAAAAGTCAGTGCA TTGACGGAACACGTGTATGGGTGCCAAGAGCTTGCGGATAAGATGAGTTC CAGCGTCCGGGAGCTCGACGAACGGCAAATGCGGGTGCAGCGGGTGTTGG CCATGGTGGAAGACATCATAAATCTTAAAACCTGCGCGGAGGGTGTGGCC CGTGccctggaggaagatgatcTCCTTGGTGCTACCAGCTACGTGCGCCA ATTCCACAGCATTGAGGGAGCATCCGCAAAGGCATCGGGGCATTACAATG TCCTCGTGGCCGCGGAGGCGCGGTTGAAGGAGACGGTGTTGAGAAGGGTG CACTTGGCGGTCTCACGGTCCGAGCTGGACGACGTGTTCAAATTCTGCCC GCTTCTGGGTCCCTTGGGCCTGGCCAAGGAAGGCGCGAGCATTTACGAGT CCTTCGCGGAGCGGCTGCTGAAAGAGGGGCTCGACCCCCTGGCCGCGGAG ACGAATAAGCTCCCGGCCGTACAGCTGTTGCCCAAGATCTACAACACCGC GGCAGGTTTTTTGCAGCGTCATTTGCCCTTGGTGTCGCACGGCTTCAAAC AGGTGGACGCGGACGTGTCTTTGATCCGCCTGGTCCAGCGAGAGTGCGAG GATGCGGCCATCCCGGTGATTCGTCGGTTTCTGGAGGACAAAGGCGTGGC CGAGAAGTGCCgcgcggtggcggaggccagcCGCGGCGACAATGGGTTGG ACGGTGGGGCATTTTACgcccggaaggaggggggccatCGCCGACGAGGA GCGCAGGCTtcgggcggcgagggagaggaggcgttACCCATCGGGGAGAT GGACGGGCTGATGGACGCGCTCGCCCTCGTGATACAGCACACGGAGAGCT ACGACCGGTTCCTGCGACACGTGGCGGCCGAGATTCTGGAGACGGGCCGG GACCTGGGAGCGCCCGTCTTGCCGGCGGTCACGGATTTGAacggggcggt ggcggaggtcgCCGGGCCCTTCGCCCTGTTGGAGGACTATGTGATGcgcg cctccatcgccaagGCTCTGCAGATCGACGAGCTacccgccctggccccg cTCTCGCTCGTGCAGGCAGGCACCTCCCTCGTGGCCTCGGGAGCAGGGAT TGCCTCCAtcggcgagggcgacgacCTGCTCCTCAGCACCGGCCGTGGGG ACTCTCCCCTCACCTCGAGCGCCGTAGACGACAGCTTCTACGTGCTCAGG CGGTGCGCTCGACGTGCCTTGGTCACCGGGCACGCAGGGACGGCCTCCGC CATCATCAATTACATCAACGGTGCCCTCTCGGACGAGCTCATGTCCGTCT TGAGCGCCAAAGTCCGGTCTCTTCGAGAGCTCCCTCTGCCAATCGGGctg ctccccgccgcctcctctttgggGGCACCCGTTGCAGGTACAGCGGTGGT AGCTGTCAAGCAGCATTGGAgcaaagtgaaggagggaataggTGCGGGAC TGGAGACTGCGCAACAGCTCACCGCGGCTGCGGGGTCTTTGATGGGCGGC GCTGCCGGCGTgggcctgggcggggggggattgGGGGCGGTGACTTGTTA CCCTtacgaggaggcgaagaacGCTTTGGATCGTCTGGTCATGCTGAACA ACCTGTCCGCCTGCGCGCGCTACACTCTTAAATTGCAGCAAGAATTGATG GCCGAGgttccctccattttccagGACGACCCACCGACGCAGCAGCTCAT GGCGTGCCTGCAGGACATGTCGGTGACGGCGAAGCACTTCGAGCAGACGG TGGACGAGGGTTTGCAGCACGTGGCGGCACTCATCAAGCCCAAGTTGCGC AGCTTCCTCCAGGACGCGTTGGGGGTGGCACAGGCcgtggggaaagggca aggaggggatgcgggccaggggggggcgagagggggcAGCAAGGTTTCCT ACGAgttggacgaggacgagttTGCAGCCAATGAGGCGGCAGATCCATTC ATGAATCGGTTCCTTGAgtttttgggggggttgCTGGGACCGATATCCCT ACGGCTTACGGGACGAAATTTCAGTGTCCTGAAAATGTCGGTGGTGGCCT ACATGGCCAAGCGTTTGGAGTATTTGCTGATGCGGCTACCCTTCACACAA CTGGGTGCTTTGCAGCTCGATAAAGATCTGCGCTGCTTGATAGCCTTCTT TCCATCGTCCACGGGCTATGGCGATTATAGCGAGACTGGTCAAGAGAGCG GACGAGTTCGAGATTGTTTCGCTCGCCTTATGCAGATGAGTCATTTGCTG AACCTTGATGTCCCTACAGACATAGTAGATGTCTTCGGAGGTAACAGCAT GAAGCTCACAGTTGAAGAAGCGCTCAACATCATGAGGTTGCGAACTGATT GGGAAGAGGTTGAAATCTGCAAAGCTCAGGAACATCTGCTTATGACATTA TCAAACGGAATATCTTCCGACACACTATGAAAGCCATGAATTGAAAGAAC GTTGTAAAGTATCGTGCTG
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Coding sequence (CDS) from alignment at CM002464.1:692169..695187+

>rna4929 ID=rna4929|Name=rna4929|organism=Nannochloropsis gaditana|type=CDS|length=2865bp|location=Sequence derived from alignment at CM002464.1:692169..695187+ (Nannochloropsis gaditana)
ATGTACCCGGTCTGTCCCACCACAACCTCGAGCCCCGTCCTCACCCGCTG
TGCGGTCTCCGACCCCCATTCTGCACACAGCGTGCCCATGGCAGCAGACA
GAGACGACCACTCCTTGGTGGAAAGTGAAGGTCGGgccaccgccgccctc
cctatTGGGGACCCCGCGAGCGAggccgcagcagccggaACAGGACCCTG
CAACGAGGAGTTTCAAGAGCTACTAGAAAGCCTCCACAATGAATTGGATG
AGGTCACAAAGAAGAAGGCCTCAGTGGAGGCTGCTTTAGGCGATGAATTG
GATTCGTTGCTTATCGTCGAGGCAACTAAGGCAGTGCCTGCCCCGGATGG
AAAGCAACTCGCCCTTCAAATGAAGGACTTGGAGAAAGCTTTTGCACCCA
CCAGGGTGGCCCACCTGACTGCAAAAGTCAGTGCATTGACGGAACACGTG
TATGGGTGCCAAGAGCTTGCGGATAAGATGAGTTCCAGCGTCCGGGAGCT
CGACGAACGGCAAATGCGGGTGCAGCGGGTGTTGGCCATGGTGGAAGACA
TCATAAATCTTAAAACCTGCGCGGAGGGTGTGGCCCGTGccctggaggaa
gatgatcTCCTTGGTGCTACCAGCTACGTGCGCCAATTCCACAGCATTGA
GGGAGCATCCGCAAAGGCATCGGGGCATTACAATGTCCTCGTGGCCGCGG
AGGCGCGGTTGAAGGAGACGGTGTTGAGAAGGGTGCACTTGGCGGTCTCA
CGGTCCGAGCTGGACGACGTGTTCAAATTCTGCCCGCTTCTGGGTCCCTT
GGGCCTGGCCAAGGAAGGCGCGAGCATTTACGAGTCCTTCGCGGAGCGGC
TGCTGAAAGAGGGGCTCGACCCCCTGGCCGCGGAGACGAATAAGCTCCCG
GCCGTACAGCTGTTGCCCAAGATCTACAACACCGCGGCAGGTTTTTTGCA
GCGTCATTTGCCCTTGGTGTCGCACGGCTTCAAACAGGTGGACGCGGACG
TGTCTTTGATCCGCCTGGTCCAGCGAGAGTGCGAGGATGCGGCCATCCCG
GTGATTCGTCGGTTTCTGGAGGACAAAGGCGTGGCCGAGAAGTGCCgcgc
ggtggcggaggccagcCGCGGCGACAATGGGTTGGACGGTGGGGCATTTT
ACgcccggaaggaggggggccatCGCCGACGAGGAGCGCAGGCTtcgggc
ggcgagggagaggaggcgttACCCATCGGGGAGATGGACGGGCTGATGGA
CGCGCTCGCCCTCGTGATACAGCACACGGAGAGCTACGACCGGTTCCTGC
GACACGTGGCGGCCGAGATTCTGGAGACGGGCCGGGACCTGGGAGCGCCC
GTCTTGCCGGCGGTCACGGATTTGAacggggcggtggcggaggtcgCCGG
GCCCTTCGCCCTGTTGGAGGACTATGTGATGcgcgcctccatcgccaagG
CTCTGCAGATCGACGAGCTacccgccctggccccgcTCTCGCTCGTGCAG
GCAGGCACCTCCCTCGTGGCCTCGGGAGCAGGGATTGCCTCCAtcggcga
gggcgacgacCTGCTCCTCAGCACCGGCCGTGGGGACTCTCCCCTCACCT
CGAGCGCCGTAGACGACAGCTTCTACGTGCTCAGGCGGTGCGCTCGACGT
GCCTTGGTCACCGGGCACGCAGGGACGGCCTCCGCCATCATCAATTACAT
CAACGGTGCCCTCTCGGACGAGCTCATGTCCGTCTTGAGCGCCAAAGTCC
GGTCTCTTCGAGAGCTCCCTCTGCCAATCGGGctgctccccgccgcctcc
tctttgggGGCACCCGTTGCAGGTACAGCGGTGGTAGCTGTCAAGCAGCA
TTGGAgcaaagtgaaggagggaataggTGCGGGACTGGAGACTGCGCAAC
AGCTCACCGCGGCTGCGGGGTCTTTGATGGGCGGCGCTGCCGGCGTgggc
ctgggcggggggggattgGGGGCGGTGACTTGTTACCCTtacgaggaggc
gaagaacGCTTTGGATCGTCTGGTCATGCTGAACAACCTGTCCGCCTGCG
CGCGCTACACTCTTAAATTGCAGCAAGAATTGATGGCCGAGgttccctcc
attttccagGACGACCCACCGACGCAGCAGCTCATGGCGTGCCTGCAGGA
CATGTCGGTGACGGCGAAGCACTTCGAGCAGACGGTGGACGAGGGTTTGC
AGCACGTGGCGGCACTCATCAAGCCCAAGTTGCGCAGCTTCCTCCAGGAC
GCGTTGGGGGTGGCACAGGCcgtggggaaagggcaaggaggggatgcggg
ccaggggggggcgagagggggcAGCAAGGTTTCCTACGAgttggacgagg
acgagttTGCAGCCAATGAGGCGGCAGATCCATTCATGAATCGGTTCCTT
GAgtttttgggggggttgCTGGGACCGATATCCCTACGGCTTACGGGACG
AAATTTCAGTGTCCTGAAAATGTCGGTGGTGGCCTACATGGCCAAGCGTT
TGGAGTATTTGCTGATGCGGCTACCCTTCACACAACTGGGTGCTTTGCAG
CTCGATAAAGATCTGCGCTGCTTGATAGCCTTCTTTCCATCGTCCACGGG
CTATGGCGATTATAGCGAGACTGGTCAAGAGAGCGGACGAGTTCGAGATT
GTTTCGCTCGCCTTATGCAGATGAGTCATTTGCTGAACCTTGATGTCCCT
ACAGACATAGTAGATGTCTTCGGAGGTAACAGCATGAAGCTCACAGTTGA
AGAAGCGCTCAACATCATGAGGTTGCGAACTGATTGGGAAGAGGTTGAAA
TCTGCAAAGCTCAGGAACATCTGCTTATGACATTATCAAACGGAATATCT
TCCGACACACTATGA
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Synonyms
Publications