EWM25760.1, cds4913 (CDS) Nannochloropsis gaditana

Overview
NameEWM25760.1
Unique Namecds4913
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002464.1:681862..682362 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM25760.1
Product30s ribosomal protein s15
Orig transcript idgnl|cribi|Naga_100168g2.5622.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:681862..682362 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005198structural molecule activity
GO:0003723RNA binding
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: INTERPRO
TermDefinition
IPR009068S15_NS1_RNA-bd
IPR000589Ribosomal_S15
IPR005290Ribosomal_S15_bac-type
Homology
BLAST of EWM25760.1 vs. NCBI_GenBank
Match: gi|585107625|gb|EWM25760.1| (30s ribosomal protein s15 [Nannochloropsis gaditana])

HSP 1 Score: 343.199 bits (879), Expect = 1.657e-119
Identity = 166/166 (100.00%), Postives = 166/166 (100.00%), Query Frame = 0
Query:    1 MWRQQLASLARLPSSSISSCKNGPTNRLLASSAASSEPLSPPSKSPSYKYLIPGSLLQDAPNPVQRALSIENADAPERKQAEKQEFIEKFGVRPGDTGSTSVQVACLTVRIKHVKDHCNANKQDKAARRGYTALLTRRRTLMKYLRRKDFASYQNVIKELGLTGFT 166
            MWRQQLASLARLPSSSISSCKNGPTNRLLASSAASSEPLSPPSKSPSYKYLIPGSLLQDAPNPVQRALSIENADAPERKQAEKQEFIEKFGVRPGDTGSTSVQVACLTVRIKHVKDHCNANKQDKAARRGYTALLTRRRTLMKYLRRKDFASYQNVIKELGLTGFT
Sbjct:    1 MWRQQLASLARLPSSSISSCKNGPTNRLLASSAASSEPLSPPSKSPSYKYLIPGSLLQDAPNPVQRALSIENADAPERKQAEKQEFIEKFGVRPGDTGSTSVQVACLTVRIKHVKDHCNANKQDKAARRGYTALLTRRRTLMKYLRRKDFASYQNVIKELGLTGFT 166          
BLAST of EWM25760.1 vs. NCBI_GenBank
Match: gi|1210531554|dbj|GAX09910.1| (small subunit ribosomal protein S15 [Fistulifera solaris])

HSP 1 Score: 104.375 bits (259), Expect = 1.564e-24
Identity = 46/99 (46.46%), Postives = 71/99 (71.72%), Query Frame = 0
Query:   64 VQRALSIENADAPERKQAEKQEFIEKFGVRPGDTGSTSVQVACLTVRIKHVKDHCNANKQDKAARRGYTALLTRRRTLMKYLRRKDFASYQNVIKELGL 162
            VQ+   ++NA   ER +++KQ+ ++ F  RPGDTGS++VQ+A L+ RI+ ++ H   +K+DK ++RG  AL +RRR ++ YL RKDF SY+ V+K LGL
Sbjct:  141 VQKLFDLQNASQMERIKSQKQKVMQIFQYRPGDTGSSAVQIAALSTRIQQMQAHMTKHKKDKHSKRGMEALFSRRRKMLDYLERKDFESYRRVVKALGL 239          
BLAST of EWM25760.1 vs. NCBI_GenBank
Match: gi|1210526788|dbj|GAX14436.1| (small subunit ribosomal protein S15 [Fistulifera solaris])

HSP 1 Score: 104.375 bits (259), Expect = 1.598e-24
Identity = 46/99 (46.46%), Postives = 71/99 (71.72%), Query Frame = 0
Query:   64 VQRALSIENADAPERKQAEKQEFIEKFGVRPGDTGSTSVQVACLTVRIKHVKDHCNANKQDKAARRGYTALLTRRRTLMKYLRRKDFASYQNVIKELGL 162
            VQ+   ++NA   ER +++KQ+ ++ F  RPGDTGS++VQ+A L+ RI+ ++ H   +K+DK ++RG  AL +RRR ++ YL RKDF SY+ V+K LGL
Sbjct:  142 VQKLFDLQNASQMERIKSQKQKVMQIFQYRPGDTGSSAVQIAALSTRIQQMQAHMTKHKKDKHSKRGMEALFSRRRKMLDYLERKDFESYRRVVKALGL 240          
BLAST of EWM25760.1 vs. NCBI_GenBank
Match: gi|669151134|ref|XP_008611129.1| (hypothetical protein SDRG_07090 [Saprolegnia diclina VS20] >gi|530737137|gb|EQC35379.1| hypothetical protein SDRG_07090 [Saprolegnia diclina VS20])

HSP 1 Score: 99.3673 bits (246), Expect = 1.896e-23
Identity = 47/106 (44.34%), Postives = 72/106 (67.92%), Query Frame = 0
Query:   57 LQDAPNPVQRALSIENADAPERKQAEKQEFIEKFGVRPGDTGSTSVQVACLTVRIKHVKDHCNANKQDKAARRGYTALLTRRRTLMKYLRRKDFASYQNVIKELGL 162
            ++DAP+ V R L+++NA   E  Q + Q+ IE F   PGDTGST VQVA LT +IK + +H   +K+D  +RRG  ++++RR+ L++YLRR++   Y+ V+  LGL
Sbjct:   55 IRDAPDAVHRMLNLDNASQAEINQLKTQKAIEAFQRFPGDTGSTEVQVAVLTQKIKRMTEHFKDHKKDNHSRRGLQSMISRRKKLLEYLRRENLQQYRAVVAALGL 160          
BLAST of EWM25760.1 vs. NCBI_GenBank
Match: gi|1173955514|gb|OQS02467.1| (hypothetical protein THRCLA_05161 [Thraustotheca clavata])

HSP 1 Score: 98.9821 bits (245), Expect = 3.005e-23
Identity = 51/130 (39.23%), Postives = 76/130 (58.46%), Query Frame = 0
Query:   47 SYKYLIPGSL--------------LQDAPNPVQRALSIENADAPERKQAEKQEFIEKFGVRPGDTGSTSVQVACLTVRIKHVKDHCNANKQDKAARRGYTALLTRRRTLMKYLRRKDFASYQNVIKELGL 162
            +Y Y +P  L              L+DAP+ V R LS ENA   E  + + Q+ I+ F   PGDTGS+ VQVA LT +IK + +H   +K+D  +RRG   +++RR+ L++YLRR++   Y+ V+  LGL
Sbjct:   28 TYNYTLPEELNGEKDLRMGFKPVQLRDAPDAVHRMLSFENASQEELNKMKIQKAIQAFQRFPGDTGSSEVQVAILTQKIKRMTEHFKEHKKDNHSRRGLQTMISRRKKLLEYLRRENLTKYRAVVAALGL 157          
BLAST of EWM25760.1 vs. NCBI_GenBank
Match: gi|1173943824|gb|OQR92631.1| (hypothetical protein ACHHYP_03473 [Achlya hypogyna])

HSP 1 Score: 98.9821 bits (245), Expect = 3.372e-23
Identity = 48/108 (44.44%), Postives = 72/108 (66.67%), Query Frame = 0
Query:   55 SLLQDAPNPVQRALSIENADAPERKQAEKQEFIEKFGVRPGDTGSTSVQVACLTVRIKHVKDHCNANKQDKAARRGYTALLTRRRTLMKYLRRKDFASYQNVIKELGL 162
            S ++DAP+ V R LS++NA   E  + + Q+ IE F   PGDTGST VQVA LT +IK + +H   +K+D  +RRG   +++RR+ L++YLRR++   Y+ V+  LGL
Sbjct:   54 SQIRDAPDAVHRMLSLDNASQEEINKIKIQKAIEAFQRFPGDTGSTEVQVAVLTQKIKRMTEHFKDHKKDNHSRRGLQTMISRRKKLLEYLRRENLQQYRAVVAALGL 161          
BLAST of EWM25760.1 vs. NCBI_GenBank
Match: gi|813215708|ref|XP_012210459.1| (hypothetical protein SPRG_15875 [Saprolegnia parasitica CBS 223.65] >gi|641524181|gb|KDO18824.1| hypothetical protein SPRG_15875 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 98.9821 bits (245), Expect = 3.468e-23
Identity = 47/106 (44.34%), Postives = 72/106 (67.92%), Query Frame = 0
Query:   57 LQDAPNPVQRALSIENADAPERKQAEKQEFIEKFGVRPGDTGSTSVQVACLTVRIKHVKDHCNANKQDKAARRGYTALLTRRRTLMKYLRRKDFASYQNVIKELGL 162
            ++DAP+ V R L+++NA   E  Q + Q+ IE F   PGDTGST VQVA LT +IK + +H   +K+D  +RRG  ++++RR+ L++YLRR++   Y+ V+  LGL
Sbjct:   55 IRDAPDAVHRMLNLDNASQAEINQLKIQKAIEAFQRFPGDTGSTEVQVAVLTQKIKRMTEHFKDHKKDNHSRRGLQSMISRRKKLLEYLRRENLQQYRAVVAALGL 160          
BLAST of EWM25760.1 vs. NCBI_GenBank
Match: gi|761903037|ref|XP_011409735.1| (PREDICTED: 28S ribosomal protein S15, mitochondrial-like [Amphimedon queenslandica])

HSP 1 Score: 98.5969 bits (244), Expect = 6.772e-23
Identity = 61/163 (37.42%), Postives = 91/163 (55.83%), Query Frame = 0
Query:    3 RQQLASLARLPSSSISSCKNGPTNRLLASSAASSEPLSPPSKSPSYKY---LIPGSLLQDAPNPVQRALSIENADAPERKQAEKQEFIEKFGVRPGDTGSTSVQVACLTVRIKHVKDHCNANKQDKAARRGYTALLTRRRTLMKYLRRKDFASYQNVIKELGL 162
            R  L    +LPS S   C         ASS A+   +S  SK   YK+    IP   ++++P  V++  SIE A   +R +  K E I+K+   PGDTGST+VQ+A +T +I+++ +H   N++DK++ R     + RR+ L KYLRR DF  Y  ++KE GL
Sbjct:   15 RLLLQRTVQLPSHSSLICSRA------ASSKAAGTGISITSK---YKFGYNDIPE--MENSPEAVKKRFSIEFASKKQRNKLLKNEMIQKYQQNPGDTGSTAVQIAIMTAKIQNLTEHMRNNRKDKSSLRKLLHGIERRKKLFKYLRRTDFTRYHVLLKEFGL 166          
BLAST of EWM25760.1 vs. NCBI_GenBank
Match: gi|550922712|ref|WP_022671221.1| (30S ribosomal protein S15 [Hippea alviniae])

HSP 1 Score: 92.4337 bits (228), Expect = 1.491e-21
Identity = 43/85 (50.59%), Postives = 58/85 (68.24%), Query Frame = 0
Query:   80 QAEKQEFIEKFGVRPGDTGSTSVQVACLTVRIKHVKDHCNANKQDKAARRGYTALLTRRRTLMKYLRRKDFASYQNVIKELGLTG 164
            + EKQE I+KFG    DTGS +VQ+A LT RIK++ +H   +K+D  +RRG   L+ RRR L+KYLR  +F  Y+ V+ ELGL G
Sbjct:    4 KEEKQEIIKKFGKNENDTGSAAVQIALLTARIKYLTEHFKTHKKDFHSRRGLLKLVGRRRKLLKYLRNYNFEEYKKVVTELGLKG 88          
BLAST of EWM25760.1 vs. NCBI_GenBank
Match: gi|490205436|ref|WP_004103868.1| (30S ribosomal protein S15 [Thermosipho africanus] >gi|226733856|sp|B7IFB5.1|RS15_THEAB RecName: Full=30S ribosomal protein S15 >gi|217036257|gb|ACJ74779.1| ribosomal protein S15 [Thermosipho africanus TCF52B] >gi|407513864|gb|EKF48737.1| 30S ribosomal protein S15 [Thermosipho africanus H17ap60334])

HSP 1 Score: 91.6633 bits (226), Expect = 2.223e-21
Identity = 42/80 (52.50%), Postives = 58/80 (72.50%), Query Frame = 0
Query:   83 KQEFIEKFGVRPGDTGSTSVQVACLTVRIKHVKDHCNANKQDKAARRGYTALLTRRRTLMKYLRRKDFASYQNVIKELGL 162
            K+E I++F +  GDTGST VQ+A LT RIKH+ +H   + +D  +RRG   L+ RRR ++KYLR KD  SY+NVI++LGL
Sbjct:    3 KEEIIKEFQIHEGDTGSTEVQIALLTARIKHLTEHLKKHPKDYHSRRGLMKLVGRRRKILKYLRNKDPESYKNVIQKLGL 82          
The following BLAST results are available for this feature:
BLAST of EWM25760.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585107625|gb|EWM25760.1|1.657e-119100.0030s ribosomal protein s15 [Nannochloropsis gaditan... [more]
gi|1210531554|dbj|GAX09910.1|1.564e-2446.46small subunit ribosomal protein S15 [Fistulifera s... [more]
gi|1210526788|dbj|GAX14436.1|1.598e-2446.46small subunit ribosomal protein S15 [Fistulifera s... [more]
gi|669151134|ref|XP_008611129.1|1.896e-2344.34hypothetical protein SDRG_07090 [Saprolegnia dicli... [more]
gi|1173955514|gb|OQS02467.1|3.005e-2339.23hypothetical protein THRCLA_05161 [Thraustotheca c... [more]
gi|1173943824|gb|OQR92631.1|3.372e-2344.44hypothetical protein ACHHYP_03473 [Achlya hypogyna... [more]
gi|813215708|ref|XP_012210459.1|3.468e-2344.34hypothetical protein SPRG_15875 [Saprolegnia paras... [more]
gi|761903037|ref|XP_011409735.1|6.772e-2337.42PREDICTED: 28S ribosomal protein S15, mitochondria... [more]
gi|550922712|ref|WP_022671221.1|1.491e-2150.5930S ribosomal protein S15 [Hippea alviniae][more]
gi|490205436|ref|WP_004103868.1|2.223e-2152.5030S ribosomal protein S15 [Thermosipho africanus] ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4925rna4925Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications