EWM25760.1, cds4913 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM25760.1 vs. NCBI_GenBank
Match: gi|585107625|gb|EWM25760.1| (30s ribosomal protein s15 [Nannochloropsis gaditana]) HSP 1 Score: 343.199 bits (879), Expect = 1.657e-119 Identity = 166/166 (100.00%), Postives = 166/166 (100.00%), Query Frame = 0 Query: 1 MWRQQLASLARLPSSSISSCKNGPTNRLLASSAASSEPLSPPSKSPSYKYLIPGSLLQDAPNPVQRALSIENADAPERKQAEKQEFIEKFGVRPGDTGSTSVQVACLTVRIKHVKDHCNANKQDKAARRGYTALLTRRRTLMKYLRRKDFASYQNVIKELGLTGFT 166 MWRQQLASLARLPSSSISSCKNGPTNRLLASSAASSEPLSPPSKSPSYKYLIPGSLLQDAPNPVQRALSIENADAPERKQAEKQEFIEKFGVRPGDTGSTSVQVACLTVRIKHVKDHCNANKQDKAARRGYTALLTRRRTLMKYLRRKDFASYQNVIKELGLTGFT Sbjct: 1 MWRQQLASLARLPSSSISSCKNGPTNRLLASSAASSEPLSPPSKSPSYKYLIPGSLLQDAPNPVQRALSIENADAPERKQAEKQEFIEKFGVRPGDTGSTSVQVACLTVRIKHVKDHCNANKQDKAARRGYTALLTRRRTLMKYLRRKDFASYQNVIKELGLTGFT 166
BLAST of EWM25760.1 vs. NCBI_GenBank
Match: gi|1210531554|dbj|GAX09910.1| (small subunit ribosomal protein S15 [Fistulifera solaris]) HSP 1 Score: 104.375 bits (259), Expect = 1.564e-24 Identity = 46/99 (46.46%), Postives = 71/99 (71.72%), Query Frame = 0 Query: 64 VQRALSIENADAPERKQAEKQEFIEKFGVRPGDTGSTSVQVACLTVRIKHVKDHCNANKQDKAARRGYTALLTRRRTLMKYLRRKDFASYQNVIKELGL 162 VQ+ ++NA ER +++KQ+ ++ F RPGDTGS++VQ+A L+ RI+ ++ H +K+DK ++RG AL +RRR ++ YL RKDF SY+ V+K LGL Sbjct: 141 VQKLFDLQNASQMERIKSQKQKVMQIFQYRPGDTGSSAVQIAALSTRIQQMQAHMTKHKKDKHSKRGMEALFSRRRKMLDYLERKDFESYRRVVKALGL 239
BLAST of EWM25760.1 vs. NCBI_GenBank
Match: gi|1210526788|dbj|GAX14436.1| (small subunit ribosomal protein S15 [Fistulifera solaris]) HSP 1 Score: 104.375 bits (259), Expect = 1.598e-24 Identity = 46/99 (46.46%), Postives = 71/99 (71.72%), Query Frame = 0 Query: 64 VQRALSIENADAPERKQAEKQEFIEKFGVRPGDTGSTSVQVACLTVRIKHVKDHCNANKQDKAARRGYTALLTRRRTLMKYLRRKDFASYQNVIKELGL 162 VQ+ ++NA ER +++KQ+ ++ F RPGDTGS++VQ+A L+ RI+ ++ H +K+DK ++RG AL +RRR ++ YL RKDF SY+ V+K LGL Sbjct: 142 VQKLFDLQNASQMERIKSQKQKVMQIFQYRPGDTGSSAVQIAALSTRIQQMQAHMTKHKKDKHSKRGMEALFSRRRKMLDYLERKDFESYRRVVKALGL 240
BLAST of EWM25760.1 vs. NCBI_GenBank
Match: gi|669151134|ref|XP_008611129.1| (hypothetical protein SDRG_07090 [Saprolegnia diclina VS20] >gi|530737137|gb|EQC35379.1| hypothetical protein SDRG_07090 [Saprolegnia diclina VS20]) HSP 1 Score: 99.3673 bits (246), Expect = 1.896e-23 Identity = 47/106 (44.34%), Postives = 72/106 (67.92%), Query Frame = 0 Query: 57 LQDAPNPVQRALSIENADAPERKQAEKQEFIEKFGVRPGDTGSTSVQVACLTVRIKHVKDHCNANKQDKAARRGYTALLTRRRTLMKYLRRKDFASYQNVIKELGL 162 ++DAP+ V R L+++NA E Q + Q+ IE F PGDTGST VQVA LT +IK + +H +K+D +RRG ++++RR+ L++YLRR++ Y+ V+ LGL Sbjct: 55 IRDAPDAVHRMLNLDNASQAEINQLKTQKAIEAFQRFPGDTGSTEVQVAVLTQKIKRMTEHFKDHKKDNHSRRGLQSMISRRKKLLEYLRRENLQQYRAVVAALGL 160
BLAST of EWM25760.1 vs. NCBI_GenBank
Match: gi|1173955514|gb|OQS02467.1| (hypothetical protein THRCLA_05161 [Thraustotheca clavata]) HSP 1 Score: 98.9821 bits (245), Expect = 3.005e-23 Identity = 51/130 (39.23%), Postives = 76/130 (58.46%), Query Frame = 0 Query: 47 SYKYLIPGSL--------------LQDAPNPVQRALSIENADAPERKQAEKQEFIEKFGVRPGDTGSTSVQVACLTVRIKHVKDHCNANKQDKAARRGYTALLTRRRTLMKYLRRKDFASYQNVIKELGL 162 +Y Y +P L L+DAP+ V R LS ENA E + + Q+ I+ F PGDTGS+ VQVA LT +IK + +H +K+D +RRG +++RR+ L++YLRR++ Y+ V+ LGL Sbjct: 28 TYNYTLPEELNGEKDLRMGFKPVQLRDAPDAVHRMLSFENASQEELNKMKIQKAIQAFQRFPGDTGSSEVQVAILTQKIKRMTEHFKEHKKDNHSRRGLQTMISRRKKLLEYLRRENLTKYRAVVAALGL 157
BLAST of EWM25760.1 vs. NCBI_GenBank
Match: gi|1173943824|gb|OQR92631.1| (hypothetical protein ACHHYP_03473 [Achlya hypogyna]) HSP 1 Score: 98.9821 bits (245), Expect = 3.372e-23 Identity = 48/108 (44.44%), Postives = 72/108 (66.67%), Query Frame = 0 Query: 55 SLLQDAPNPVQRALSIENADAPERKQAEKQEFIEKFGVRPGDTGSTSVQVACLTVRIKHVKDHCNANKQDKAARRGYTALLTRRRTLMKYLRRKDFASYQNVIKELGL 162 S ++DAP+ V R LS++NA E + + Q+ IE F PGDTGST VQVA LT +IK + +H +K+D +RRG +++RR+ L++YLRR++ Y+ V+ LGL Sbjct: 54 SQIRDAPDAVHRMLSLDNASQEEINKIKIQKAIEAFQRFPGDTGSTEVQVAVLTQKIKRMTEHFKDHKKDNHSRRGLQTMISRRKKLLEYLRRENLQQYRAVVAALGL 161
BLAST of EWM25760.1 vs. NCBI_GenBank
Match: gi|813215708|ref|XP_012210459.1| (hypothetical protein SPRG_15875 [Saprolegnia parasitica CBS 223.65] >gi|641524181|gb|KDO18824.1| hypothetical protein SPRG_15875 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 98.9821 bits (245), Expect = 3.468e-23 Identity = 47/106 (44.34%), Postives = 72/106 (67.92%), Query Frame = 0 Query: 57 LQDAPNPVQRALSIENADAPERKQAEKQEFIEKFGVRPGDTGSTSVQVACLTVRIKHVKDHCNANKQDKAARRGYTALLTRRRTLMKYLRRKDFASYQNVIKELGL 162 ++DAP+ V R L+++NA E Q + Q+ IE F PGDTGST VQVA LT +IK + +H +K+D +RRG ++++RR+ L++YLRR++ Y+ V+ LGL Sbjct: 55 IRDAPDAVHRMLNLDNASQAEINQLKIQKAIEAFQRFPGDTGSTEVQVAVLTQKIKRMTEHFKDHKKDNHSRRGLQSMISRRKKLLEYLRRENLQQYRAVVAALGL 160
BLAST of EWM25760.1 vs. NCBI_GenBank
Match: gi|761903037|ref|XP_011409735.1| (PREDICTED: 28S ribosomal protein S15, mitochondrial-like [Amphimedon queenslandica]) HSP 1 Score: 98.5969 bits (244), Expect = 6.772e-23 Identity = 61/163 (37.42%), Postives = 91/163 (55.83%), Query Frame = 0 Query: 3 RQQLASLARLPSSSISSCKNGPTNRLLASSAASSEPLSPPSKSPSYKY---LIPGSLLQDAPNPVQRALSIENADAPERKQAEKQEFIEKFGVRPGDTGSTSVQVACLTVRIKHVKDHCNANKQDKAARRGYTALLTRRRTLMKYLRRKDFASYQNVIKELGL 162 R L +LPS S C ASS A+ +S SK YK+ IP ++++P V++ SIE A +R + K E I+K+ PGDTGST+VQ+A +T +I+++ +H N++DK++ R + RR+ L KYLRR DF Y ++KE GL Sbjct: 15 RLLLQRTVQLPSHSSLICSRA------ASSKAAGTGISITSK---YKFGYNDIPE--MENSPEAVKKRFSIEFASKKQRNKLLKNEMIQKYQQNPGDTGSTAVQIAIMTAKIQNLTEHMRNNRKDKSSLRKLLHGIERRKKLFKYLRRTDFTRYHVLLKEFGL 166
BLAST of EWM25760.1 vs. NCBI_GenBank
Match: gi|550922712|ref|WP_022671221.1| (30S ribosomal protein S15 [Hippea alviniae]) HSP 1 Score: 92.4337 bits (228), Expect = 1.491e-21 Identity = 43/85 (50.59%), Postives = 58/85 (68.24%), Query Frame = 0 Query: 80 QAEKQEFIEKFGVRPGDTGSTSVQVACLTVRIKHVKDHCNANKQDKAARRGYTALLTRRRTLMKYLRRKDFASYQNVIKELGLTG 164 + EKQE I+KFG DTGS +VQ+A LT RIK++ +H +K+D +RRG L+ RRR L+KYLR +F Y+ V+ ELGL G Sbjct: 4 KEEKQEIIKKFGKNENDTGSAAVQIALLTARIKYLTEHFKTHKKDFHSRRGLLKLVGRRRKLLKYLRNYNFEEYKKVVTELGLKG 88
BLAST of EWM25760.1 vs. NCBI_GenBank
Match: gi|490205436|ref|WP_004103868.1| (30S ribosomal protein S15 [Thermosipho africanus] >gi|226733856|sp|B7IFB5.1|RS15_THEAB RecName: Full=30S ribosomal protein S15 >gi|217036257|gb|ACJ74779.1| ribosomal protein S15 [Thermosipho africanus TCF52B] >gi|407513864|gb|EKF48737.1| 30S ribosomal protein S15 [Thermosipho africanus H17ap60334]) HSP 1 Score: 91.6633 bits (226), Expect = 2.223e-21 Identity = 42/80 (52.50%), Postives = 58/80 (72.50%), Query Frame = 0 Query: 83 KQEFIEKFGVRPGDTGSTSVQVACLTVRIKHVKDHCNANKQDKAARRGYTALLTRRRTLMKYLRRKDFASYQNVIKELGL 162 K+E I++F + GDTGST VQ+A LT RIKH+ +H + +D +RRG L+ RRR ++KYLR KD SY+NVI++LGL Sbjct: 3 KEEIIKEFQIHEGDTGSTEVQIALLTARIKHLTEHLKKHPKDYHSRRGLMKLVGRRRKILKYLRNKDPESYKNVIQKLGL 82 The following BLAST results are available for this feature:
BLAST of EWM25760.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|