rna4902, rna4902 (mRNA) Nannochloropsis gaditana

Overview
Namerna4902
Unique Namerna4902
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1851
Alignment locationCM002464.1:630833..631812 -

Link to JBrowse

Properties
Property NameValue
Productzinc finger cchc domain-containing protein 7
Orig transcript idgnl|cribi|Naga_100176g10.1047.mrna
Orig protein idgnl|cribi|Naga_100176g10.1047
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:630833..631812 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100176g10gene4735Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4902rna4902-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25778.1cds4890Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4902 ID=rna4902|Name=rna4902|organism=Nannochloropsis gaditana|type=mRNA|length=1851bp
ATGACAGATCCTATCAATATGTGCATGACTTACGAACAGCGTACGCTAGA
TGCCTTGACGACGCCTTTTATTCTCCCTGTAACGATTATTACGGGATACC
TCGGCAGCGGCAAAACAACCCTTCTACGCAAGTTGCTGACACAGAAAAAA
AACCTTAGAATAGCGGCGATGGTCAATGATTTGGGTGATTTCAACCACGA
CGTGCAACTTTTACAACTGGAGAAAACGGTGGCCAACTCCTCCTCACCGA
GTAACCACGGTTTCTCCCAAGCCGCCAGACTCTCTCCAGATAAGAGTAAC
GCCCCCTCCGACCGCATTATGGACTTACATGGCAGTTGTCTGTGCTGTTC
ACACCTACAGCAAGAAATGAGACAGAATATTTGGGAATGTCTGCAGACAC
CAGAGCAAGAAGAACGGGCGATCGACTACCTAGTGATAGAGACTAGCGGC
GTGACGGACCCTGAGAGGATTATCCAGGCGCTGGACGAGAAATTCGGCAA
GATGACACGAGCTCGCCTTGACAGCGTCGTTACTATGGTGGACGCTGATG
TATTACATGCAGAATTAGTGGACTCTACACCTGCTGTTCGTGACACGAGA
GGTGCTACCTTGTCTGCGCACGTACCCTCCGCATCTCATCCAGGAATTCC
CCCGACACGACGCCGTCAAATCGAGTGCGCCGACGTGATTATACTGAATA
AGACGGACCTAGTGAAAGACCTAGCTTATCTCGATGATTTGGAAGCGTTC
TTACGGAAGCTTAACCCGCTTGCACGCATACACCGGACACGCTTCGCTGA
CTTACCTCTACCCTGCGTGCTTGACGTGGAGTTACCTGATTTGGGGGCGG
GGAGCATGACACACGAAGAAAGCAACGCTCTTTATGCTACCCGAAAGGTC
TCCACTCTTCGATCTGAGCCTTCTCAAGCTGTCAGCAGCAGAGCCAGAAA
GACCGATCTCTTCACCGGGGCCGCGACGGCGGCCTCGGACCAGAATTCAA
GGTCCCATTTAGTGTCTGAGGGCATCTCTGCCTTTACATTCGAGAGTAAA
AGCCCTTTTTTACTTCGTAAATTACAGCGCTTCTTCTCCCACGTCTTCCC
TGCAGAGGCGGTAATACGCAGCAAGGGTTTTCTGTACGTACGGGAATTGG
CAGGTCGCCGGGTCGCCTTATCCATAAGTGGGCGTCGCCGTTTCCATCTC
TCAGACGAGGGAACATGGTCTTCCGCACCCGGGACGCAAGTCGTTTTCAT
CGGGCGACTCTCAGGTTACCAGAAAAGCCAAATACAAACATCGCTACAAA
ATGCCTGCAAAGCTGATGATGAGGAAACATCCTTTCCACTATCAGATCCT
CATCTGGCTTCTTCGTCTTTGGCGGCACGAATTCGGGATATGATTGCCCT
GGACAAGCGAATGGAGGTCATGGATGCTCGCGCAATTTTGGGGCCCCTGT
TACGGCAGCAACTAAAGAGGAACTATGTAGGAGCAGCACCTCATTCTTTG
CCGTCCTGGGTGGATTGTCTCGTGACGTTCCGCCTGACTGGGGCCCCATC
ATTGGGAGTCACAGCCGACCACCTAAGGCTGACACATGGGGTGGATTTGG
ACGCCCTAAATATCTCATTGCAACAGAAGGTCAACATGGCAGGAATACAG
GGAAGGCCGCTGTTGTACACTCTCCCTTTTGATGGGGAGGAAAGGGGAAT
AGCATTGTGTTTTGTGGTAGAAGAGGGGAATGCAGAGGATGGGAAAGGGA
GGGCTTACTTTTCCTCAACATGGGAATGGGTGACATTGCTTGCCGACTCT
GTCATCGCTCGCAATCTCAGTCATTTGAAACTTTGCAAATGTGGACACTA
G
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protein sequence of rna4902

>rna4902-protein ID=rna4902-protein|Name=rna4902|organism=Nannochloropsis gaditana|type=polypeptide|length=292bp
MLHERGTRKFRGVLFVTYKKAGDTARALKEMEGARIDNRAVFLAASERTR
NRGSLGKGESRYFLVDKALFCRRCHDVGHTMKFCPNPPKARPCTICAALT
GHQDDDCPELALGTPEGALCLQCGATDHEDSACVHRLQAAAALKADAGVR
CLSCARLGHGALCGPHASTNAPTGEVGFGRRAPHFVCCFQCGSAGHFGYH
CNYRPQEAFQLRRHSYSGTHVRYNVDDPPAPDPPPPVHTVPSNIPQHHLV
PGPMVSTIYSQRGRGLSPGGRIGLLFMRQVGGGIALKRTETK
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mRNA from alignment at CM002464.1:630833..631812-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4902 ID=rna4902|Name=rna4902|organism=Nannochloropsis gaditana|type=mRNA|length=980bp|location=Sequence derived from alignment at CM002464.1:630833..631812- (Nannochloropsis gaditana)
ATGCTGCACGAGCGGGGCACGCGCAAGTTCCGCGGAGTGTTGTTCGTCAC
CTACAAGAAGGCTGGCGACACCGCCCGAGCCCTGAAGGAAATGGAGGGAG
CCCGCATCGACAACCGCGCTGTCTTCTTGGCCGCCTCGGAGAGGACGAGG
AACCGCGGGTCGCTGGGCAAGGGAGAATCTCGCTACTTCCTGGTGGACAA
AGCCTTATTCTGTCGGCGCTGCCACGACGTGGGCCACACGATGAAGTTCT
GCCCCAACCCTCCGAAGGCCAGGCCGTGCACCATCTGTGCGGCGCTGACA
GGGCACCAGGACGACGACTGCCCCGAGCTTGCCCTCGGCACGCCCGAGGG
CGCCCTCTGTCTGCAGTGCGGAGCCACCGATCACGAGGACAGCGCCTGCG
TACATCGACTGCAAGCCGCGGCGGCACTGAAGGCAGATGCCGGCGTCCGC
TGTCTCTCTTGCGCGAGACTCGGGCACGGAGCTCTTTGCGGGCCGCATGC
TTCAACAAACGCGCCCACTGGGGAGGTCGGCTTCGGACGCAGAGCTCCCC
ACTTCGTGTGTTGCTTTCAGTGCGGGTCGGCTGGGCATTTCGGATACCAC
TGTAACTATCGGCCGCAGGAGGCCTTCCAGTTAAGACGCCACAGCTACTC
GGGCACTCACGTGAGATATAACGTTGATGACCCCCCTGCGCCAGACCCTC
CGCCGCCTGTTCATACTGTCCCCTCCAATATTCCACAACACCATTTGGTT
CCTGGGCCGATGGTTTCGACAATCTATTCCCAGCGTGGACGTGGATTGAG
CCCCGGAGGAAGAATCGGGTAGCGGGCCGGGGCTGGTGGTAAAGGTGGAG
TAGAGTAGGACGTGAAAGCAGTTCGACCATGAGATGCGTCGGCGCTGCAA
TGTTATTCCTTCTTTTAAGGTTACTTTTTATGAGGCAAGTCGGTGGAGGA
ATCGCACTGAAGCGCACTGAGACAAAGTAA
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Coding sequence (CDS) from alignment at CM002464.1:630833..631812-

>rna4902 ID=rna4902|Name=rna4902|organism=Nannochloropsis gaditana|type=CDS|length=1758bp|location=Sequence derived from alignment at CM002464.1:630833..631812- (Nannochloropsis gaditana)
GTTACTTTTTATGAGGCAAGTCGGTGGAGGAATCGCACTGAAGCGCACTG
AGACAAAGTAAATGCTGCACGAGCGGGGCACGCGCAAGTTCCGCGGAGTG
TTGTTCGTCACCTACAAGAAGGCTGGCGACACCGCCCGAGCCCTGAAGGA
AATGGAGGGAGCCCGCATCGACAACCGCGCTGTCTTCTTGGCCGCCTCGG
AGAGGACGAGGAACCGCGGGTCGCTGGGCAAGGGAGAATCTCGCTACTTC
CTGGTGGACAAAGCCTTATTCTGTCGGCGCTGCCACGACGTGGGCCACAC
GATGAAGTTCTGCCCCAACCCTCCGAAGGCCAGGCCGTGCACCATCTGTG
CGGCGCTGACAGGGCACCAGGACGACGACTGCCCCGAGCTTGCCCTCGGC
ACGCCCGAGGGCGCCCTCTGTCTGCAGTGCGGAGCCACCGATCACGAGGA
CAGCGCCTGCGTACATCGACTGCAAGCCGCGGCGGCACTGAAGGCAGATG
CCGGCGTCCGCTGTCTCTCTTGCGCGAGACTCGGGCACGGAGCTCTTTGC
GGGCCGCATGCTTCAACAAACGCGCCCACTGGGGAGGTCGGCTTCGGACG
CAGAGCTCCCCACTTCGTGTGTTGCTTTCAGTGCGGGTCGGCTGGGCATT
TCGGATACCACTGTAACTATCGGCCGCAGGAGGCCTTCCAGTTAAGACGC
CACAGCTACTCGGGCACTCACGTGAGATATAACGTTGATGACCCCCCTGC
GCCAGACCCTCCGCCGCCTGTTCATACTGTCCCCTCCAATATTCCACAAC
ACCATTTGGTTCCTGGGCCGATGGTTTCGACAATCTATTCCCAGCGTGGA
CGTGGATTGAGCCCCGGAGGAAGAATCGGGTTACTTTTTATGAGGCAAGT
CGGTGGAGGAATCGCACTGAAGCGCACTGAGACAAAGTAAATGCTGCACG
AGCGGGGCACGCGCAAGTTCCGCGGAGTGTTGTTCGTCACCTACAAGAAG
GCTGGCGACACCGCCCGAGCCCTGAAGGAAATGGAGGGAGCCCGCATCGA
CAACCGCGCTGTCTTCTTGGCCGCCTCGGAGAGGACGAGGAACCGCGGGT
CGCTGGGCAAGGGAGAATCTCGCTACTTCCTGGTGGACAAAGCCTTATTC
TGTCGGCGCTGCCACGACGTGGGCCACACGATGAAGTTCTGCCCCAACCC
TCCGAAGGCCAGGCCGTGCACCATCTGTGCGGCGCTGACAGGGCACCAGG
ACGACGACTGCCCCGAGCTTGCCCTCGGCACGCCCGAGGGCGCCCTCTGT
CTGCAGTGCGGAGCCACCGATCACGAGGACAGCGCCTGCGTACATCGACT
GCAAGCCGCGGCGGCACTGAAGGCAGATGCCGGCGTCCGCTGTCTCTCTT
GCGCGAGACTCGGGCACGGAGCTCTTTGCGGGCCGCATGCTTCAACAAAC
GCGCCCACTGGGGAGGTCGGCTTCGGACGCAGAGCTCCCCACTTCGTGTG
TTGCTTTCAGTGCGGGTCGGCTGGGCATTTCGGATACCACTGTAACTATC
GGCCGCAGGAGGCCTTCCAGTTAAGACGCCACAGCTACTCGGGCACTCAC
GTGAGATATAACGTTGATGACCCCCCTGCGCCAGACCCTCCGCCGCCTGT
TCATACTGTCCCCTCCAATATTCCACAACACCATTTGGTTCCTGGGCCGA
TGGTTTCGACAATCTATTCCCAGCGTGGACGTGGATTGAGCCCCGGAGGA
AGAATCGG
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Synonyms
Publications