EWM25778.1, cds4890 (CDS) Nannochloropsis gaditana

Overview
NameEWM25778.1
Unique Namecds4890
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002464.1:630995..631812 -
Alignment locationCM002464.1:630833..630893 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM25778.1
Productzinc finger cchc domain-containing protein 7
Orig transcript idgnl|cribi|Naga_100176g10.1047.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:630995..631812 -
CM002464.1supercontigCM002464.1:630833..630893 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0000166nucleotide binding
GO:0008270zinc ion binding
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR012677Nucleotide-bd_a/b_plait
IPR001878Znf_CCHC
Homology
[Close]
BLAST of EWM25778.1 vs. NCBI_GenBank
Match: gi|585107644|gb|EWM25778.1| (zinc finger cchc domain-containing protein 7 [Nannochloropsis gaditana])

HSP 1 Score: 597.816 bits (1540), Expect = 0.000e+0
Identity = 292/292 (100.00%), Postives = 292/292 (100.00%), Query Frame = 0 
Query:    1 MLHERGTRKFRGVLFVTYKKAGDTARALKEMEGARIDNRAVFLAASERTRNRGSLGKGESRYFLVDKALFCRRCHDVGHTMKFCPNPPKARPCTICAALTGHQDDDCPELALGTPEGALCLQCGATDHEDSACVHRLQAAAALKADAGVRCLSCARLGHGALCGPHASTNAPTGEVGFGRRAPHFVCCFQCGSAGHFGYHCNYRPQEAFQLRRHSYSGTHVRYNVDDPPAPDPPPPVHTVPSNIPQHHLVPGPMVSTIYSQRGRGLSPGGRIGLLFMRQVGGGIALKRTETK 292
            MLHERGTRKFRGVLFVTYKKAGDTARALKEMEGARIDNRAVFLAASERTRNRGSLGKGESRYFLVDKALFCRRCHDVGHTMKFCPNPPKARPCTICAALTGHQDDDCPELALGTPEGALCLQCGATDHEDSACVHRLQAAAALKADAGVRCLSCARLGHGALCGPHASTNAPTGEVGFGRRAPHFVCCFQCGSAGHFGYHCNYRPQEAFQLRRHSYSGTHVRYNVDDPPAPDPPPPVHTVPSNIPQHHLVPGPMVSTIYSQRGRGLSPGGRIGLLFMRQVGGGIALKRTETK
Sbjct:    1 MLHERGTRKFRGVLFVTYKKAGDTARALKEMEGARIDNRAVFLAASERTRNRGSLGKGESRYFLVDKALFCRRCHDVGHTMKFCPNPPKARPCTICAALTGHQDDDCPELALGTPEGALCLQCGATDHEDSACVHRLQAAAALKADAGVRCLSCARLGHGALCGPHASTNAPTGEVGFGRRAPHFVCCFQCGSAGHFGYHCNYRPQEAFQLRRHSYSGTHVRYNVDDPPAPDPPPPVHTVPSNIPQHHLVPGPMVSTIYSQRGRGLSPGGRIGLLFMRQVGGGIALKRTETK 292
[Close]
BLAST of EWM25778.1 vs. NCBI_GenBank
Match: gi|677269586|gb|KFP60904.1| (Zinc finger CCHC domain-containing protein 7, partial [Cariama cristata])

HSP 1 Score: 65.4698 bits (158), Expect = 1.818e-9
Identity = 51/167 (30.54%), Postives = 63/167 (37.72%), Query Frame = 0 
Query:   40 AVFLAASERTRNRGSLGKGESRYFLVDKALFCRRCHDVGHTMKFCPNPPKARPCTICAALTGHQDDDCPELALGTPEGALCLQCGATDHEDSACVHRLQAAAALKADAGVRCLSCARLGHGALCGP------HASTN-APTGEVGFGRRAPHFVCCFQCGSAGHFGY 199
            ++ L+   +  N  S+     RY+  DK + CR C   GH  K CP P K  PC +CA   GH  + CPE          CL C    H    C+         KA     C  C   GH A   P      H +T   P    G        V C+ C   GHFGY
Sbjct:    2 SLSLSHQAQISNYASVRHTSMRYYTADKNVICRNCSRPGHLSKNCPTPKKVPPCCLCAG-RGHLQNSCPE--------RFCLNCCLPGHYFRECLE--------KAYWNKHCNRCDMKGHYADACPEIWRQYHLTTKPGPIKSAGSHSERSALVYCYNCSRKGHFGY 151
[Close]
BLAST of EWM25778.1 vs. NCBI_GenBank
Match: gi|975113484|ref|XP_015271939.1| (PREDICTED: zinc finger CCHC domain-containing protein 7 [Gekko japonicus] >gi|975113486|ref|XP_015271940.1| PREDICTED: zinc finger CCHC domain-containing protein 7 [Gekko japonicus])

HSP 1 Score: 68.5514 bits (166), Expect = 2.117e-9
Identity = 48/152 (31.58%), Postives = 61/152 (40.13%), Query Frame = 0 
Query:   60 SRYFLVDKALFCRRCHDVGHTMKFCPNPPKARPCTICAALTGHQDDDCPELALGTPEGALCLQCGATDHEDSACVHRLQAAAALKADAGVRCLSCARLGHGALCGPHASTNA-PTGEVGFGRRAPHF------VCCFQCGSAGHFGYHCNYR 204
            +RY++ DK + CR C   GH  K CP P K  PC +CA   GH  ++CP           CL C    H    C+ R   +          C  CA  GH A   P        T   G  R+   F      V C+ C   GH+GY C+ R
Sbjct:  260 NRYYMPDKNVTCRNCDKRGHLSKNCPTPKKVPPCCLCAE-RGHLQNNCP--------ARFCLNCCLPGHFSRECIERTYWSK--------HCNRCAMRGHYADACPEIWRQYHLTTRPGPLRKTSSFSEHSAPVYCYNCSQQGHYGYECSER 394
[Close]
BLAST of EWM25778.1 vs. NCBI_GenBank
Match: gi|529432917|ref|XP_005236248.1| (PREDICTED: zinc finger CCHC domain-containing protein 7 [Falco peregrinus])

HSP 1 Score: 67.781 bits (164), Expect = 4.798e-9
Identity = 54/180 (30.00%), Postives = 65/180 (36.11%), Query Frame = 0 
Query:   32 EGARIDNRAVFLAASERTRNRGSLGKGESRYFLVDKALFCRRCHDVGHTMKFCPNPPKARPCTICAALTGHQDDDCPELALGTPEGALCLQCGATDHEDSACVHRLQAAAALKADAGVRCLSCARLGHGALCGP------HASTN-APTGEVGFGRRAPHFVCCFQCGSAGHFGYHCNYR 204
            EG  +D          +  N GSL     RY+  +K + CR C   GH  K CP P K  PC +CA   GH  + CP           CL C    H    C+ R        A     C  C   GH A   P      H +T   P             V C+ C   GHFGY C+ R
Sbjct:  230 EGVDVDWSICNKDLEAQISNYGSLRHTSMRYYRANKNVTCRNCDRPGHLSKNCPTPKKVPPCCLCAE-RGHLQNSCP--------ARFCLNCCLPGHFFRECLER--------AYWNKHCSRCDMKGHYADACPEIWRQYHLTTKPGPIKAASSHPEHSALVYCYNCSQKGHFGYECSER 392
[Close]
BLAST of EWM25778.1 vs. NCBI_GenBank
Match: gi|541986247|ref|XP_005444609.1| (PREDICTED: zinc finger CCHC domain-containing protein 7 [Falco cherrug])

HSP 1 Score: 67.3958 bits (163), Expect = 5.165e-9
Identity = 54/180 (30.00%), Postives = 65/180 (36.11%), Query Frame = 0 
Query:   32 EGARIDNRAVFLAASERTRNRGSLGKGESRYFLVDKALFCRRCHDVGHTMKFCPNPPKARPCTICAALTGHQDDDCPELALGTPEGALCLQCGATDHEDSACVHRLQAAAALKADAGVRCLSCARLGHGALCGP------HASTN-APTGEVGFGRRAPHFVCCFQCGSAGHFGYHCNYR 204
            EG  +D          +  N GSL     RY+  +K + CR C   GH  K CP P K  PC +CA   GH  + CP           CL C    H    C+ R        A     C  C   GH A   P      H +T   P             V C+ C   GHFGY C+ R
Sbjct:  230 EGVDVDWSICNKDLEAQISNYGSLRHTSMRYYRANKNVTCRNCDRPGHLSKNCPTPKKVPPCCLCAE-RGHLQNSCP--------ARFCLNCCLPGHFFRECLER--------AYWNKHCSRCDMKGHYADACPEIWRQYHLTTKPGPIKAASSHPEHSALVYCYNCSQKGHFGYECSER 392
[Close]
BLAST of EWM25778.1 vs. NCBI_GenBank
Match: gi|679135730|gb|KFW65202.1| (Zinc finger CCHC domain-containing protein 7, partial [Pygoscelis adeliae])

HSP 1 Score: 65.0846 bits (157), Expect = 5.321e-9
Identity = 50/159 (31.45%), Postives = 59/159 (37.11%), Query Frame = 0 
Query:   51 NRGSLGKGESRYFLVDKALFCRRCHDVGHTMKFCPNPPKARPCTICAALTGHQDDDCPELALGTPEGALCLQCGATDHEDSACVHRLQAAAALKADAGVRCLSCARLGHGALCGP------HASTN-APTGEVGFGRRAPHFVCCFQCGSAGHFGYHCN 202
            N  S+     RY+  DK + CR C   GH  K CP P K  PC +CA   GH  + CP           CL C    H    C+ R        A     C  C   GH A   P      H +T   P    G        V C+ C   GHFGY C+
Sbjct:    6 NYASVRHTSMRYYTADKNVTCRNCSRPGHLSKNCPTPKKVPPCCLCAG-RGHLQNSCP--------ARFCLNCCLPGHYFRECLER--------AYWNKHCNRCDMKGHYADACPEIWRQYHLTTKPGPIKAAGSHSERSALVYCYNCSRKGHFGYECS 147
[Close]
BLAST of EWM25778.1 vs. NCBI_GenBank
Match: gi|675305882|gb|KFM01144.1| (Zinc finger CCHC domain-containing protein 7, partial [Aptenodytes forsteri])

HSP 1 Score: 64.6994 bits (156), Expect = 7.433e-9
Identity = 50/159 (31.45%), Postives = 59/159 (37.11%), Query Frame = 0 
Query:   51 NRGSLGKGESRYFLVDKALFCRRCHDVGHTMKFCPNPPKARPCTICAALTGHQDDDCPELALGTPEGALCLQCGATDHEDSACVHRLQAAAALKADAGVRCLSCARLGHGALCGP------HASTN-APTGEVGFGRRAPHFVCCFQCGSAGHFGYHCN 202
            N  S+     RY+  DK + CR C   GH  K CP P K  PC +CA   GH  + CP           CL C    H    C+ R        A     C  C   GH A   P      H +T   P    G        V C+ C   GHFGY C+
Sbjct:    6 NYASVRHTSMRYYAADKNVTCRNCSRPGHLSKNCPTPKKVPPCCLCAG-RGHLQNSCP--------ARFCLNCCLPGHYFRECLER--------AYWNKHCNRCDMKGHYADACPEIWRQYHLTTKPGPIKAAGSHSERSALVYCYNCSRKGHFGYECS 147
[Close]
BLAST of EWM25778.1 vs. NCBI_GenBank
Match: gi|1011589559|gb|KYO34985.1| (zinc finger CCHC domain-containing protein 7 [Alligator mississippiensis])

HSP 1 Score: 67.0106 bits (162), Expect = 7.679e-9
Identity = 45/151 (29.80%), Postives = 58/151 (38.41%), Query Frame = 0 
Query:   60 SRYFLVDKALFCRRCHDVGHTMKFCPNPPKARPCTICAALTGHQDDDCPELALGTPEGALCLQCGATDHEDSACVHRLQAAAALKADAGVRCLSCARLGHGALCGP------HASTNAPTGEVGFGRRAPHFVCCFQCGSAGHFGYHCNYR 204
            +RY+  DK + CR C+  GH  K CP P K  PC +C+   GH  + CP           CL C    H    C+ R        A    RC  C   GH A   P      H +T     +            C+ C   GH+GY C+ R
Sbjct:  258 NRYYATDKNVTCRNCNKQGHLSKNCPTPKKMPPCCLCSE-RGHLQNTCP--------ARFCLNCCLPGHYSKECLER--------AYWSKRCNRCDMKGHYADACPEIWRQYHLTTKPGPIKKASSSEYSIIAYCYNCSRKGHYGYECSER 391
[Close]
BLAST of EWM25778.1 vs. NCBI_GenBank
Match: gi|1117339308|ref|XP_019372348.1| (PREDICTED: zinc finger CCHC domain-containing protein 7 [Gavialis gangeticus])

HSP 1 Score: 67.0106 bits (162), Expect = 7.851e-9
Identity = 47/152 (30.92%), Postives = 61/152 (40.13%), Query Frame = 0 
Query:   60 SRYFLVDKALFCRRCHDVGHTMKFCPNPPKARPCTICAALTGHQDDDCPELALGTPEGALCLQCGATDHEDSACVHRLQAAAALKADAGVRCLSCARLGHGALCGPHAS-----TNAPTGEVGFGRRAPHFVC--CFQCGSAGHFGYHCNYR 204
            +RY+  DK + CR C+  GH  K CP P K  PC +C+   GH  + CP           CL C    H    C+ R        A    RC  C   GH A   P        T  P G +     + + V   C+ C   GH+GY C+ R
Sbjct:  262 NRYYTTDKNVTCRNCNKQGHLSKNCPTPKKMPPCCLCSE-RGHLQNTCP--------ARFCLNCCLPGHYSKECLER--------AYWSKRCNRCDMKGHYADACPEIWRQYHLTTKP-GPIKKASSSEYSVIAYCYNCSRKGHYGYECSER 395
[Close]
BLAST of EWM25778.1 vs. NCBI_GenBank
Match: gi|1113763477|ref|XP_019346282.1| (PREDICTED: zinc finger CCHC domain-containing protein 7 isoform X1 [Alligator mississippiensis])

HSP 1 Score: 67.0106 bits (162), Expect = 7.892e-9
Identity = 45/151 (29.80%), Postives = 58/151 (38.41%), Query Frame = 0 
Query:   60 SRYFLVDKALFCRRCHDVGHTMKFCPNPPKARPCTICAALTGHQDDDCPELALGTPEGALCLQCGATDHEDSACVHRLQAAAALKADAGVRCLSCARLGHGALCGP------HASTNAPTGEVGFGRRAPHFVCCFQCGSAGHFGYHCNYR 204
            +RY+  DK + CR C+  GH  K CP P K  PC +C+   GH  + CP           CL C    H    C+ R        A    RC  C   GH A   P      H +T     +            C+ C   GH+GY C+ R
Sbjct:  280 NRYYATDKNVTCRNCNKQGHLSKNCPTPKKMPPCCLCSE-RGHLQNTCP--------ARFCLNCCLPGHYSKECLER--------AYWSKRCNRCDMKGHYADACPEIWRQYHLTTKPGPIKKASSSEYSIIAYCYNCSRKGHYGYECSER 413
The following BLAST results are available for this feature:
BLAST of EWM25778.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585107644|gb|EWM25778.1|0.000e+0100.00zinc finger cchc domain-containing protein 7 [Nann... [more]
gi|677269586|gb|KFP60904.1|1.818e-930.54Zinc finger CCHC domain-containing protein 7, part... [more]
gi|975113484|ref|XP_015271939.1|2.117e-931.58PREDICTED: zinc finger CCHC domain-containing prot... [more]
gi|529432917|ref|XP_005236248.1|4.798e-930.00PREDICTED: zinc finger CCHC domain-containing prot... [more]
gi|541986247|ref|XP_005444609.1|5.165e-930.00PREDICTED: zinc finger CCHC domain-containing prot... [more]
gi|679135730|gb|KFW65202.1|5.321e-931.45Zinc finger CCHC domain-containing protein 7, part... [more]
gi|675305882|gb|KFM01144.1|7.433e-931.45Zinc finger CCHC domain-containing protein 7, part... [more]
gi|1011589559|gb|KYO34985.1|7.679e-929.80zinc finger CCHC domain-containing protein 7 [Alli... [more]
gi|1117339308|ref|XP_019372348.1|7.851e-930.92PREDICTED: zinc finger CCHC domain-containing prot... [more]
gi|1113763477|ref|XP_019346282.1|7.892e-929.80PREDICTED: zinc finger CCHC domain-containing prot... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4902rna4902Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications