rna4894, rna4894 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4894
Unique Name	rna4894
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3461
Alignment location	CM002464.1:615132..616583 +

Link to JBrowse

Properties


Property Name	Value
Product	rna terminal phosphate cyclase-like 1
Orig transcript id	gnl\|cribi\|Naga_100021g73.8757.mrna
Orig protein id	gnl\|cribi\|Naga_100021g73.8757
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002464.1	supercontig	CM002464.1:615132..616583 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100021g73	gene4727	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4894	rna4894-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25814.1	cds4882	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002464.1:615132..616583+
coding sequence from alignment at CM002464.1:615132..616583+

mRNA sequence

>rna4894 ID=rna4894|Name=rna4894|organism=Nannochloropsis gaditana|type=mRNA|length=3461bp
CGCGCACTTCCGCAATCATGCTCGTGCCGTCCACCTACAATGATGCCGGG
AACATAGCGCAGCACCGTGCCGGTTTCGTTGATCTCCACCTGACATCCGT
TGGTCAAGCGCTCCAGCAGGCGCAAGAAGCCTCCTTCGAAGTCCCGCAGC
CCCGGTTCCTCCTCCTCCGACCGGATGTGCGTGATAAGCAAGGGCCTCCC
GCTCAACGTAGCACAAACGAGGCGTTGCCGAAAGTTGTTGCACCCTTTAA
ACTTCATAGTCGACATTTTGGCGTGCAAAGGCTGAAACGCAACTAGGACA
GTAGAAGTCTGGTGCTTAGATACTTTGGCAGGGGTGGAAGGAAACAAGTG
AAATTAGCAATGCCTGGGTGCAAAAAAAGAGTCGATCATGACGGACATTA
AACGGAAGCAAACACAGAGTCAGGATCTCTTCGCAAGCGAAGCCAGGAAA
CAGTTCATGTCACGTCAATTGTGTGGATGGGGTGGTTGAGGTGACGGTGA
AAGGGAAGACAAGGGCAAGGTTGGACGATCGCAGCTTCCAATCCTCCAAC
GAGCTTGCTCAGAAAGACTTAAATTGCACGCTCCTCTGTCATTTAAGAAG
ATTTAAACGAGAGAGATGAAGAGAGGGGGGCAGGCAGGGTCAAAGCCGAA
GGCCGGGCTCAAGCCGGACACGGGAACGTGAAGAGAGGAAACTGCTGGCG
TGCTGGGATAAGGTCAGGAAGGAAACAGGCGGCTAAACAGGTGAAAATGG
CCAGGTACCATCGAGCCCGCTGTGAACAACAGTGTGCGCGATCGCTATGA
TTGGGCATGTTCGGCTCGTGGGCTGAATGTGGCCCGGACTCGAAATGAAA
CGCGTTGTCGCCATAGAGGGGCCATCGCTGAGGCCTTCTCGTGAGGGCGG
TGCATTTGAGAACTTGGCTTTGGCAGGGCGCTTGCCCGCGGAAAGATCGA
CACCGCGTTCTAGAACGCACGTTGTCTGTAACAAGTGCCATTATCATGAA
GGTCTTAGCATCCTTGACTTTTGATTTGACACTGGGGGGTTCTAAACGTA
GCTTCATCGATCCGAACACCCCTTCTCACTTGGAGTTCCTCTTCAACTTC
CATACTTGCTTCCCACCAGCTTTGCCGGGACAAGACGCAGCCATGCTCTC
CACTTTTTCATCAAATTTGAAGCGGGCTGCCATGCATCCGACAATGATGC
ACATGGTACGTGTAAATTTGGCGCGTGCAGGCATGGTCTCTGTGTCACGT
GCGTCCACCCCCGCCGACTCCCATTTCATTCTCACGGCCACGGGGCCAGA
CCGCGCCGGCATTGTCTTCGACATCGCCAAGCTGGTCTTGGACAACAATG
GAGATATCCAGGAATCAAGAATGATGCGCATGGGCTGTGACTTCTCATTG
ATGATGCGCGTGGCCGCACCGAAGCCAGACGCGGACCAAATCACTCAAAA
GCTCGGGAAGGTAGGAGGCATGTCAGTCATTACCCATCCGGTCACCGCGG
AGCGGGCCAACCAAGTCGTGCCGAAGCCTGCATGGAAGGCAAATTTCAAC
GTAGAGGGCGTGAACCACCCGGGTTTGGTATACAAGGTTACTGAGCTATT
CTTTGCGCGAGGCCTGAGGGTCGAGAAGCTGCACACGGACACGAAAATTG
CCCCGTTCGGGGGCACGGTCTTATTCTTGATGGACGGGACGATTATTTCG
GATAAACCGATTGATTTCGCTGACCTGAAGGAGGCTTCAGAGAGCCTGTC
TTCTTTTTTAGGTATCGACCTTGACTTGAAGCCCTTGCCGACGAGTGAGT
AATCATATGTAAACCATGACGTTGCAATCGAAAAAATTGACTCTGACCTT
CCTCCGCGTAAGAGACTGCCTGTGGGGAAATTGCATGAGTGGCCTTCGCT
TGCCTGTCATTTTATTGCTCTTGGTGTTTATTGAATGCTCAAAAGACGGC
ATAGATGAAATATGGAAGGCAGGAGGTGAGCAGACCGGGGACCACCCAAA
GGAACCGAAGAAATGTGACGAAAGCGTCGTCTCTGTGGTGGCAGTGATTT
GCGAAGCGGAAGAGCACCATCATACTTATTTCTTTTTCTTCTGAGCGCAG
ACTGGTGATTGTGTTCCACTCTCGTCGAGGACATTTTGCACACGTGGTGT
GACTCAAGGTCACGGCACATCCAGCGTCCTTCCCCTGACACGCATGGGTT
TGAGGGGCCTAGCTCATCAAACAGGAAGCATAGACTGATATGAAGAGGAG
GTGCATTCGAGAATAGAAGCATTTAGAGTAGCAATCAGACTAGGAACGTC
AGGTCTCACTCACAAAGATATCCCGTATTCCTTTTTGTGCGTTCCGATAC
CCCTTATTATCGATGCGTGAATATTCTGAGTCTGTGACGTTGAAAACACC
TCCTTACGGACACATGACACAGGGATGAAAGCTGGTGACCCGAGATCACA
TGCAACAGTCCCCAATCCACTGAATGATTAAGACTCAGCCACCGTCTTAC
TGATGCTGGTATAAACCCACTCTACATCTCCCGTTCGACCCGGCCCTTCT
TAGTACTCTTCACCCTCTTCACCCTCCCCGTCCGCATCGGCCGTCTCCGC
ACCAACCTCCTCGTAATCCTTCTCCAGCGCGGCCAGATCCTCACGCGCCT
CAGAGAATTCACCCTCCTCCATACCCTCACCTACATACCAGTGGACGAAA
GCACGCTTGGCGTACATGAGGTCGAACTTGTGGTCGATGCGGGAAAGGGC
CTCGGCGATGGCCGTGGTATTCGCCACCATGCAGACTGCGCGCTGGACGC
GGGCCAGGTCGCCGCCAGGCACCACGGTGGGGGGCTGGTAGTTGATGCCG
CACTTGAAGCCGGTGGGGCACCAGTCCACGAACTGGATCGTGCGCTTAGT
CTTGATGGTGGCCACCGCGGCGTTGACATCCTTGGGGACCACGTCACCGC
GGTACATGAGGCAGCAGGCCATGTACTTGCCGTGACGGGGGTCGCACTTG
GTCATCATGTTCGCGGGCTCGAAGACCGAGTTGGTAATCTCGGCCACAGA
GAGCTGCTCGTGGTAGGCCTTCTCCGCAGAGATCACGGGCGCATAGGACG
TGAGCATGAAGTGAATGCGGGGGTAGGGTACCAGGTTGGTCTGGAACTCT
GTCACATCCACATTGAGAGCGCCGTCGAAACGCAGAGAAGCGGTCAAGGA
GGAGATGACCTGGGCGATGAGCCTGTTCAGATTCGTGTACGTGGGGCGCT
CAATATCAAGGTTGCGGCGGCACGTGTCGTAGAGAGCTTCGTTATCCAAG
CAGAAAGTCACGTCGGTATGCTCAAGCAGGGCATGGGTGGACAGGACGGA
GTTGTAGGGCTCGACCACGGCGGTGGCCACCTGGGGCGCAGGTGTCACAG
CGAAAGACAGCTTGGACTTGCGCCCGTAATCCACAGATAGACGCTCCAGG
AGCAGCGCGCC

protein sequence of rna4894

>rna4894-protein ID=rna4894-protein|Name=rna4894|organism=Nannochloropsis gaditana|type=polypeptide|length=356bp
MSTMKFKGCNNFRQRLVCATLSGRPLLITHIRSEEEEPGLRDFEGGFLRL
LERLTNGCQVEINETGTVLRYVPGIIVGGRHEHDCGSARSISWFLEGILP
LAVFAKQPLHLSLSGLTNDSFDVSVDNVKAVILPILAFFGAEGATLNVKK
RGLPPSGGGHVEFSCPIVRELRPCNLVDAGLIKRVRGVAYCAKISPQFAN
RVVTSARGLLNRLLPDVYVHTDHYKGLAGGHSPGFGLTLVAESTTGCLLA
VDVHAKEGALPEDVGERGSALLLEEVRRGGCVDSVGQALVLLLMALGPED
VSKVRIGQLTMHGIQTLRLAREAFGVTFKIRADTETGTVLLSCLGSGVRN
FSKKVT

mRNA from alignment at CM002464.1:615132..616583+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4894 ID=rna4894|Name=rna4894|organism=Nannochloropsis gaditana|type=mRNA|length=1452bp|location=Sequence derived from alignment at CM002464.1:615132..616583+ (Nannochloropsis gaditana)
CGTGCAATTTAAGTCTTTCTGAGCAAGCTCGTTGGAGGATTGGAAGCTGC
GATCGTCCAACCTtgcccttgtcttccctttcaccGTCACCTCAACCACC
CCATCCACACAATTGACGTGACATGAACTGTTTCCTGGCTTCGCTTGCGA
AGAGATCCTGACTCTGTGTTTGCTTCCGTTTAATGTCCGTCATGATCGAC
TCTTTTTTTGCACCCAGGCATTGCTAATTTCACTTgtttccttccacccc
tgccaAAGTATCTAAGCACCAGACTTCTACTGTCCTAGTTGCGTTTCAGC
CTTTGCACGCCAAAATGTCGACTATGAAGTTTAAAGGGTGCAACAACTTT
CGGCAACGCCTCGTTTGTGCTACGTTGAGCGGGAGGCCCTTGCTTATCAC
GCACATCcggtcggaggaggaggaaccgGGGCTGCGGGACTTCGAAGGAG
GCTTCTTGCGCCTGCTGGAGCGCTTGACCAACGGATGTCAGGTGGAGATC
AACGAAACCGGCACGGTGCTGCGCTATGTTCCCGGCATCATTGTAGGTGG
ACGGCACGAGCATGATTGCGGAAGTGCGCGGTCCATCAGCTGGTTCTTGG
AGGGCATCTTGCCCCTGGCGGTGTTTGCGAAGCAGCCCCTGCATCTCTCG
TTGAGCGGTCTCACCAATGACAGCTTCGATGTATCGGTAGACAATGTTAA
AGCTGTCATTTTGCCTATATTGGCCTTTTTTGGGGCGGAAGGCGCGACCC
TCAATGTGAAGAAACGGGGCCTGCCCccgagtgggggggggcacgtaGAA
TTTTCGTGCCCCATTGTGCGAGAGCTTCGACCATGCAATCTCGTTGACGC
CGGCTTGATCAAGCGTGTCCGAGGCGTGGCGTATTGCGCAAAGATCTCAC
CGCAGTTCGCCAACCGTGTGGTGACGTCGGCCCGCGGCCTCCTGAACCGC
CTGCTCCCGGATGTGTACGTGCACACGGACCATTACAAGGGCCTGGCCGG
CGGCCACAGCCCCGGCTTCGGGCTGACACTGGTTGCAGAGAGCACCACCG
GCTGTTTGCTAGCTGTGGATGTGCatgccaaggagggggctcTACCGGAG
GATGTGGGTGAGCGGGGGAGCGCGCTGCTGCTTGAAGAGGTGCGACGGGG
CGGATGCGTGGATTCCGTGGGGCAGGCGCTGGTCTTGCTTTTGATGGCGC
TGGGGCCGGAGGATGTCTCGAAAGTGAGGATCGGCCAGCTCACCATGCAC
GGTATACAAACGCTGCGGCTGGCGCGCGAGGCCTTTGGAGTCACCTTCAA
GATCCGGGCGGACACTGAGACGGGGACAGTGCTGCTCTCCTGCTTGGGGA
GTGGCGTGAGAAACTTCAGCAAGAAGGTCACGTAATGCCAATTTCTTCGT
TTGGTGATGTACAAAGCACCCAAGTAAAGTAGCAAATACTCAACTTCCTA
TA

Coding sequence (CDS) from alignment at CM002464.1:615132..616583+

>rna4894 ID=rna4894|Name=rna4894|organism=Nannochloropsis gaditana|type=CDS|length=1071bp|location=Sequence derived from alignment at CM002464.1:615132..616583+ (Nannochloropsis gaditana)
ATGTCGACTATGAAGTTTAAAGGGTGCAACAACTTTCGGCAACGCCTCGT
TTGTGCTACGTTGAGCGGGAGGCCCTTGCTTATCACGCACATCcggtcgg
aggaggaggaaccgGGGCTGCGGGACTTCGAAGGAGGCTTCTTGCGCCTG
CTGGAGCGCTTGACCAACGGATGTCAGGTGGAGATCAACGAAACCGGCAC
GGTGCTGCGCTATGTTCCCGGCATCATTGTAGGTGGACGGCACGAGCATG
ATTGCGGAAGTGCGCGGTCCATCAGCTGGTTCTTGGAGGGCATCTTGCCC
CTGGCGGTGTTTGCGAAGCAGCCCCTGCATCTCTCGTTGAGCGGTCTCAC
CAATGACAGCTTCGATGTATCGGTAGACAATGTTAAAGCTGTCATTTTGC
CTATATTGGCCTTTTTTGGGGCGGAAGGCGCGACCCTCAATGTGAAGAAA
CGGGGCCTGCCCccgagtgggggggggcacgtaGAATTTTCGTGCCCCAT
TGTGCGAGAGCTTCGACCATGCAATCTCGTTGACGCCGGCTTGATCAAGC
GTGTCCGAGGCGTGGCGTATTGCGCAAAGATCTCACCGCAGTTCGCCAAC
CGTGTGGTGACGTCGGCCCGCGGCCTCCTGAACCGCCTGCTCCCGGATGT
GTACGTGCACACGGACCATTACAAGGGCCTGGCCGGCGGCCACAGCCCCG
GCTTCGGGCTGACACTGGTTGCAGAGAGCACCACCGGCTGTTTGCTAGCT
GTGGATGTGCatgccaaggagggggctcTACCGGAGGATGTGGGTGAGCG
GGGGAGCGCGCTGCTGCTTGAAGAGGTGCGACGGGGCGGATGCGTGGATT
CCGTGGGGCAGGCGCTGGTCTTGCTTTTGATGGCGCTGGGGCCGGAGGAT
GTCTCGAAAGTGAGGATCGGCCAGCTCACCATGCACGGTATACAAACGCT
GCGGCTGGCGCGCGAGGCCTTTGGAGTCACCTTCAAGATCCGGGCGGACA
CTGAGACGGGGACAGTGCTGCTCTCCTGCTTGGGGAGTGGCGTGAGAAAC
TTCAGCAAGAAGGTCACGTAA

Synonyms

Publications