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Properties
Property Name | Value |
Product | Protein of unknown function DUF4286 |
Orig transcript id | gnl|cribi|Naga_100021g63.8772.mrna |
Orig protein id | gnl|cribi|Naga_100021g63.8772 |
Gbkey | mRNA |
Note | encoded by transcript variant 1; alternatively spliced |
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
CM002464.1 | supercontig | CM002464.1:587119..591511 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna4885 ID=rna4885|Name=rna4885|organism=Nannochloropsis gaditana|type=mRNA|length=4139bp GACGCAGAATTTGATGTCAAGCACGTTGTGAAGTTCTTTGGCGACAGCTA TTTGAAGACACACGAATGCCGCCACATGGAGAAACTGATGTTTACCACGC GCATTACACAGGACTACAAGGACGCTTTGGTACTCTGCAATTGGCCATGA TGCATCATCTACCGCGACTCTCTATGCGATGTAACTCTCTCGCTTGTAAA GGGTTGTTTGCCCCATTCGCGCTTACGTTTCGCTCCCAAGGATCGTCGGC CTTTCCACAGGCTGCGTCTACCCAAAGATGCTGGCCTCCCCCCCATTTAT CGCATGAGGATGGCAAACGCAGCATTTTGGATGCCATGTCCGAACCCTCC TATCCTCATTTGGCGGACCGACCTTACCTGCGACAACCCATTCCATTGAC TTCTCCAAACGACCCCGCAAATCGCATTAAATATGAAGTGACACTGGAAA TTGACGAAGACATCGTGGAAGGCTACTTGGCTTGGATCCAAGAAGGACAC ATCCAAGAGGTCATGGCGCTGCCCGGCTTTGTGGGATGGAACATTTCGGC TTCGGAGGATAGCATAGCTGCAAGTCGGGGGATACATGGTCAACGCCGTG TGGTTTTTGTGGAGCAGTATGAGGTCGAGTCTCGAGAGTTTCTGGAGAAG TATTTCGTCAAATATGCTCAGAGGATTCGCGACGATCATTCCCGGATGTG GGAAGGCAAGTTTGCCGCCTCGCGGCGCATTCTCCACACGTTCGGCCGCC AGACTGACAAGGAAGCTGAGCTTTGGAAGCAGCGCGATGCAAAAAACAGC TTCCGTCTTAATAATTTGCGGTACCAGGTTGATCGAGTGCCTCGATTCAC ATCCGAGGGTCTGAAGGTCCAAGCTCTACCGTCTTCGTTGTGGGAAACAC TGAAGCAGTTTTACCGGGCGCGCCGGCACGAGTCCGTGGAGGACCGCCTC GACCCGTCGGAGATTTCGATCAATACCTGGGTATCGCCCACTCTGCGCCT CGATCTCCCTCCCGCTTTGGCATCCGAGGTCGTCGGCACGCTCAAACCCA TTCTTGAGTCCTGGTGCGGTGTGGCGGAGCTAGAGTCGACGGGTATCAGT GGCATTCGTACCTACCTTCCCGGCGCCACCATCCAAGAGCACGTGGACAT GGCGACCACCAATGTCGTGTCCGCGCTTATCAACCTGGACCAGGATGTGA AGGAGCCCTGGCCTTTTGAAATGAGGGATCATTCTGGCAAGCTCCACGCC TTGCATATGCGGCCCGGGGAGGTGGTCATGTATGAATCTGCGACGTGCGC ACACCGGCGTTCTCGCCCGCTGCCACCTGGAGGCTACTACACGAATCTGT TTCTCCGTTTCAAGCCTAAGGGATGGACATTTACATACTAGTTAACATAG TAGTTGGATACGCCATGGACTTGAGCCTGAAAGAAAACGATGAGACCAGG GTAGGCTGGCGTGTGAGCAAGCGGGAGGCGGTATCGCTTGTGAGCAGCGG AAGGCTACAGTGCTTCTATGGAGCAACTTGACAAGCTTGTAAATGTGTGT GTGTGTCGATATTATTTCTAGCGTCGTAGTATAGCGCCATCACGTGACTG ACGGCGAGACGAGGAGGCGTGCGTTCATTCCCGAGCTCACTTTGACATGA ATGTGAAGCGACGGGGTGCTTTTGTGGTTTCTCTTTATCACAGCAGTGTA AAATAAAGTGGACAGTCAGGACTTGTTCGGCCACAATACTTCGCCCAGGA GAGCAGCATTGGCAAAAATAAGCGCCTCTTGATACCATTTCACTTCAGCT TTCAGGGTCTCTGTCGGGCAGAATATAGGTTCTTTTTCTCATCTTAAATT CACAAGGCACTGACGATTAGAAAACCAAACGCCTACTTGGTCGTCTCTGG TCTCTTCCTCTCCTTGACATCCGTGTCCCCCACTACATTCCTCTCCTGGC TCTCTCTCTTTCACCGCCCGACCCCGACCTCGCTTCTCCTCATTTCTGAC ATGGACCGATACTTGGCCTTTTCCGGAAAGCGCAGCCATGACGTTGATTT AGAAATTCCCCCGGAATCGTACGGACAATAGCCCCGGCTATATGTCGTAG GCTCGAAGAGGCCAGAGAATTATCACTTCTGCTTCTTCTTGGGAGGCGCA TCTTCCTCCTCCTCGTCTTCGTCGTCCTCTTCATCATCTTCGCCGTCGCC ACCCTCCTCCTCGTCTTCCTCGTCATCCTCATCCCCGTCATTGTCTCCAC CACCCCCCTCCTCGGCGCCCTCTTCATCGTCCTCGCCGTCCTCATCCTCG TAGTCGTTCTCCGAGTCGTCCTGTCAGGAATGCACGTGTCAGAACGCGAT ATTGAGTCGGCGTGGGTCTTTCGTCAGTGAAGCTTCTTCTTAACATTCCG CATAATTATCGAATGGAAGAATGCTCACAAAATTAACAAAAAGCGGGGAG CCCGTCTCGGGGGTACGGGTTGAATGTACCTTCCTCTCGCTTTTCGAGAC CCGAAAACTGTACACTTTCTCTCTGCCCAAAGCGCCCCCCTTTACCGACC CGAATCACCTTACCTCGTCGTCGTCATCATCTTCGTCGTCGTCGTTCTCG TTGTCCTCATCCTCCTCCTCGCCCTCCACATAGTCCTCATCCTGTCGTTG AAGATTGAAGTTATTTATTGCGGAGGGACTTCACATGCATGCTTTGCAGC CTAAGCCGCGGAGTAGGGAGTAACACACTTCACGACCCCTATCCCATTGG CTTTGACGGTGGAAATTTTGCGTGTTGTGCGGATCGCAACCTCACGGGAG AGAACGCTCACTTACATCCTCGCTGTCCTCGTCATCGTCCTCCACGTCTA CCACGTTTTTAGGGACCTCCTCTGAATTACTCTGCCAATGAAGTATGAAT GGTGATAAAGTGACGTGAGCCACGAGTAGCGTCGCAATCCTTTGCGAGTT TTGACTGGAGTTAACGTATATCACTAGGCCTCCGAATTCATTATGCAGGC GGCGTCTCCCACACTCACCATGCTTAGCTTTAAATGCTGTAGATAAATTC TAGTTGGGGCCGTGAAGCGTGCAAATAACCTGTACGCTGTAAAATGGGCG GGTCTTTATCCATTACTGGGCAAGAGTGTCAAAGCCTGGGTGTGGGCGGG GTGAATATAATCCATCGCCCCGCCCGATCGCCTCGCTTAAGGGGGCCGTG CGGGCTCGACCTCGCCGCCCTTCGCTCGTGCACACAGTATTGACAAAAAC TTCTCGTCGCTTTCCGTATGCAATTTCTCCACCACATCGCTGCAGGGAAC CTCGTGTGAGCAGGCGGAAGGGGCTTTAAGCATGAATCGTCAGGGTAAGA CAAGGCTGTCAAAGTGGTATATCTTACCACCAAACGAGGCTGAAAAGTTT CGTTTGGAGGCGGACGTGCACAAGCTGATTGTGAGCCGGGATCGTAAATA CACAAATTTTGTCGAATACCAGAATTACAAACTCATTTATCGGCGCTACG CTGGACTTTATTTCTCTTTGGGTGTGGATGTGACGGACAATGAACTCGCA TATCTGGAGTCTATCCACCTGTTTGTTGAGCTCCTCGATGAGTACTTTCG CAATGTCTGCGAGCTCGACATTGTGTTCAATTTTAACAAGGTGTACTCCA TCTTGGACGAATTCATTTTAGCGGGAGAGATTCAAGAGACGAGCAAGCGC GAGATTTTGGAGCGTATTCGGGATATGCAAGGATATGAGAAAGCCTCCGA AAAGTAGGGAAAGTCTTTCGACCTCGGCGAAACAAAACAAGTAAATCGTC ATGGTGGAGAGATGAACAATTTTTGTACAAAGAAATCAGGTCAAAGGACG TAATTTTTGATGCAGAAGTACAGCAGGGTAATCAAAAAGAGAGTTTTGCT TCAGCTTAATTGGCTACATGTGCTCTGTACGCTAGGAATCATCGGAATTT TCATCGCCGTATCCGGCTCCGTCCGCCTCGAGACCATCGGCGTCCGCCTC ATCTCCAACCATGTCCTCCTCGTCTCCCTCTTCCTCGCTGCTTCCATCCA TGTACACCTCAACATCCCCATTATCGTCACCTGGTGCGAAGGTGTGATCG CCACTTCCGTGCTTGGAAATCTGAGCAAGCATGAGTTCC back to topprotein sequence of rna4885 >rna4885-protein ID=rna4885-protein|Name=rna4885|organism=Nannochloropsis gaditana|type=polypeptide|length=441bp MPPHGETDVYHAHYTGLQGRFGTLQLAMMHHLPRLSMRCNSLACKGLFAP FALTFRSQGSSAFPQAASTQRCWPPPHLSHEDGKRSILDAMSEPSYPHLA DRPYLRQPIPLTSPNDPANRIKYEVTLEIDEDIVEGYLAWIQEGHIQEVM ALPGFVGWNISASEDSIAASRGIHGQRRVVFVEQYEVESREFLEKYFVKY AQRIRDDHSRMWEGKFAASRRILHTFGRQTDKEAELWKQRDAKNSFRLNN LRYQVDRVPRFTSEGLKVQALPSSLWETLKQFYRARRHESVEDRLDPSEI SINTWVSPTLRLDLPPALASEVVGTLKPILESWCGVAELESTGISGIRTY LPGATIQEHVDMATTNVVSALINLDQDVKEPWPFEMRDHSGKLHALHMRP GEVVMYESATCAHRRSRPLPPGGYYTNLFLRFKPKGWTFTY back to topmRNA from alignment at CM002464.1:587119..591511- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >rna4885 ID=rna4885|Name=rna4885|organism=Nannochloropsis gaditana|type=mRNA|length=4393bp|location=Sequence derived from alignment at CM002464.1:587119..591511- (Nannochloropsis gaditana) GACGCAGAATTTGATGTCAAGCACGTTGTGAAGTTCTTTGGCGACAGCTA
TTTGAAGACACACGAATGCCGCCACATGGAGAAACTGATGTTTACCACGC
GCATTACACAGGACTACAAGGACGCTTTGGTACTCTGCAATTGGCCATGA
TGCATCATCTACCGCGACTCTCTATGCGATGTAACTCTCTCGCTTGTAAA
GGGTTGTTTGCCCCATTCGCGCTTACGTTTCGCTCCCAAGGATCGTCGGC
CTTTCCACAGGCTGCGTCTACCCAAAGATGCTGGCCTCCCCCCCATTTAT
CGCATGAGGATGGCAAACGCAGCATTTTGGATGCCATGTCCGAACCCTCC
TATCCTCATTTGGCGGACCGACCTTACCTGCGACAACCCATTCCATTGAC
TTCTCCAAACGACCCCGCAAATCGCATTAAATATGAAGTGACACTGGAAA
TTGACGAAGACATCGTGGAAGGCTACTTGGCTTGGATCCAAGAAGGACAC
ATCCAAGAGGTCATGGCGCTGCCCGGCTTTGTGGGATGGAACATTTCGGC
TTCGGAGGATAGCATAGCTGCAAGTCGGGGGATACATGGTCAACGCCGTG
TGGTTTTTGTGGAGCAGTATGAGGTCGAGTCTCGAGAGTTTCTGGAGAAG
TATTTCGTCAAATATGCTCAGAGGATTCGCGACGATCATTCCCGGATGTG
GGAAGGCAAGTTTGCCGCCTCGCGGCGCATTCTCCACACGTTCGGCCGCC
AGACTGACAAGGAAGCTGAGCTTTGGAAGCAGCGCGATGCAAAAAACAGC
TTCCGTCTTAATAATTTGCGGTACCAGGTTGATCGAGTGCCTCGATTCAC
ATCCGAGGGTCTGAAGGTCCAAGCTCTACCGTCTTCGTTGTGGGAAACAC
TGAAGCAGTTTTACCGGGCGCGCCGGCACGAGTCCGTGGAGGACCGCCTC
GACCCGTCGGAGATTTCGATCAATACCTGGGTATCGCCCACTCTGCGCCT
CGATCTCCCTCCCGCTTTGGCATCCGAGGTCGTCGGCACGCTCAAACCCA
TTCTTGAGTCCTGGTGCGGTGTGGCGGAGCTAGAGTCGACGGGTATCAGT
GGCATTCGTACCTACCTTCCCGGCGCCACCATCCAAGAGCACGTGGACAT
GGCGACCACCAATGTCGTGTCCGCGCTTATCAACCTGGACCAGGATGTGA
AGGAGCCCTGGCCTTTTGAAATGAGGGATCATTCTGGCAAGCTCCACGCC
TTGCATATGCGGCCCGGGGAGGTGGTCATGTATGAATCTGCGACGTGCGC
ACACCGGCGTTCTCGCCCGCTGCCACCTGGAGGCTACTACACGAATCTGT
TTCTCCGTTTCAAGCCTAAGGGATGGACATTTACATACTAGTTAACATAG
TAGTTGGATACGCCATGGACTTGAGCCTGAAAGAAAACGATGAGACCAGG
GTAGGCTGGCGTGTGAGCAAGCGGGAGGCGGTATCGCTTGTGAGCAGCGG
AAGGCTACAGTGCTTCTATGGAGCAACTTGACAAGCTTGTAAATGTGTGT
GTGTGTCGATATTATTTCTAGCGTCGTAGTATAGCGCCATCACGTGACTG
ACGGCGAGACGAGGAGGCGTGCGTTCATTCCCGAGCTCACTTTGACATGA
ATGTGAAGCGACGGGGTGCTTTTGTGGTTTCTCTTTATCACAGCAGTGTA
AAATAAAGTGGACAGTCAGGACTTGTTCGGCCACAATACTTCGCCCAGGA
GAGCAGCATTGGCAAAAATAAGCGCCTCTTGATACCATTTCACTTCAGCT
TTCAGGGTCTCTGTCGGGCAGAATATAGGTTCTTTTTCTCATCTTAAATT
CACAAGGCACTGACGATTAGAAAACCAAACGCCTACTTGGTCGTCTCTGG
TCTCTTCCTCTCCTTGACATCCGTGTCCCCCACTACATTCCTCTCCTGGC
TCTCTCTCTTTCACCGCCCGACCCCGACCTCGCTTCTCCTCATTTCTGAC
ATGGACCGATACTTGGCCTTTTCCGGAAAGCGCAGCCATGACGTTGATTT
AGAAATTCCCCCGGAATCGTACGGACAATAGCCCCGGCTATATGTCGTAG
GCTCGAAGAGGCCAGAGAATTATCACTTCTGCTTCTTCTTGGGAGGCGCA
TCTTCCTCCTCCTCGTCTTCGTCGTCCTCTTCATCATCTTCGCCGTCGCC
ACCCTCCTCCTCGTCTTCCTCGTCATCCTCATCCCCGTCATTGTCTCCAC
CACCCCCCTCCTCGGCGCCCTCTTCATCGTCCTCGCCGTCCTCATCCTCG
TAGTCGTTCTCCGAGTCGTCCTGTCAGGAATGCACGTGTCAGAACGCGAT
ATTGAGTCGGCGTGGGTCTTTCGTCAGTGAAGCTTCTTCTTAACATTCCG
CATAATTATCGAATGGAAGAATGCTCACAAAATTAACAAAAAGCGGGGAG
CCCGTCTCGGGGGTACGGGTTGAATGTACCTTCCTCTCGCTTTTCGAGAC
CCGAAAACTGTACACTTTCTCTCTGCCCAAAGCGCCCCCCTTTACCGACC
CGAATCACCTTACCTCGTCGTCGTCATCATCTTCGTCGTCGTCGTTCTCG
TTGTCCTCATCCTCCTCCTCGCCCTCCACATAGTCCTCATCCTGTCGTTG
AAGATTGAAGTTATTTATTGCGGAGGGACTTCACATGCATGCTTTGCAGC
CTAAGCCGCGGAGTAGGGAGTAACACACTTCACGACCCCTATCCCATTGG
CTTTGACGGTGGAAATTTTGCGTGTTGTGCGGATCGCAACCTCACGGGAG
AGAACGCTCACTTACATCCTCGCTGTCCTCGTCATCGTCCTCCACGTCTA
CCACGTTTTTAGGGACCTCCTCTGAATTACTCTGCCAATGAAGTATGAAT
GGTGATAAAGTGACGTGAGCCACGAGTAGCGTCGCAATCCTTTGCGAGTT
TTGACTGGAGTTAACGTATATCACTAGGCCTCCGAATTCATTATGCAGGC
GGCGTCTCCCACACTCACCATGCTTAGCTTTAAATGCTGTAGATAAATTC
TAGTTGGGGCCGTGAAGCGTGCAAATAACCTGTACGCTGTAAAATGGGCG
GGTCTTTATCCATTACTGGGCAAGAGTGTCAAAGCCTGGGTGTGGGCGGG
GTGAATATAATCCATCGCCCCGCCCGATCGCCTCGCTTAAGGGGGCCGTG
CGGGCTCGACCTCGCCGCCCTTCGCTCGTGCACACAGTATTGACAAAAAC
TTCTCGTCGCTTTCCGTATGCAATTTCTCCACCACATCGCTGCAGGGAAC
CTCGTGTGAGCAGGCGGAAGGGGCTTTAAGCATGGTACGTGTAAGAGTGC
CGACTGCCCGACTTCGTTTTCTCTTCTCGTCCTGGTCTTGTAGTGTATGC
ATTTGAAAACCTCATGTCTTAAAAAACCGGCTTTTAATCATATGTGGACT
GCTAGATTCGATTTCTATTGCTTCAGAATCGTCAGGGTAAGACAAGGCTG
TCAAAGTGGTATATCTTACCACCAAACGAGGCTGAAAAGTTTCGTTTGGA
GGCGGACGTGCACAAGCTGATTGTGAGCCGGGATCGTAAATACACAAATT
TTGTCGAATACCAGAATTACAAACTCATTTATCGGCGCTACGCTGGACTT
TATTTCTCTTTGGGTGTGGATGTGACGGACAATGAACTCGCATATCTGGA
GTCTATCCACCTGTTTGTTGAGCTCCTCGATGAGTACTTTCGCAATGTCT
GCGAGCTCGACATTGTGTTCAATTTTAACAAGGTGAGGATCATGAGGGGA
TTCGTAAGGACGTTATTGACCGCGAACAGCTTACGGAAAGGCCTTGTCTG
CCTTTTCAAGTGACAATTTCTCATCTCCACGCACGCGCGAACAGGTGTAC
TCCATCTTGGACGAATTCATTTTAGCGGGAGAGATTCAAGAGACGAGCAA
GCGCGAGATTTTGGAGCGTATTCGGGATATGCAAGGATATGAGAAAGCCT
CCGAAAAGTAGGGAAAGTCTTTCGACCTCGGCGAAACAAAACAAGTAAAT
CGTCATGGTGGAGAGATGAACAATTTTTGTACAAAGAAATCAGGTCAAAG
GACGTAATTTTTGATGCAGAAGTACAGCAGGGTAATCAAAAAGAGAGTTT
TGCTTCAGCTTAATTGGCTACATGTGCTCTGTACGCTAGGAATCATCGGA
ATTTTCATCGCCGTATCCGGCTCCGTCCGCCTCGAGACCATCGGCGTCCG
CCTCATCTCCAACCATGTCCTCCTCGTCTCCCTCTTCCTCGCTGCTTCCA
TCCATGTACACCTCAACATCCCCATTATCGTCACCTGGTGCGAAGGTGTG
ATCGCCACTTCCGTGCTTGGAAATCTGAGCAAGCATGAGTTCC back to topCoding sequence (CDS) from alignment at CM002464.1:587119..591511- >rna4885 ID=rna4885|Name=rna4885|organism=Nannochloropsis gaditana|type=CDS|length=1326bp|location=Sequence derived from alignment at CM002464.1:587119..591511- (Nannochloropsis gaditana) ATGCCGCCACATGGAGAAACTGATGTTTACCACGCGCATTACACAGGACT ACAAGGACGCTTTGGTACTCTGCAATTGGCCATGATGCATCATCTACCGC GACTCTCTATGCGATGTAACTCTCTCGCTTGTAAAGGGTTGTTTGCCCCA TTCGCGCTTACGTTTCGCTCCCAAGGATCGTCGGCCTTTCCACAGGCTGC GTCTACCCAAAGATGCTGGCCTCCCCCCCATTTATCGCATGAGGATGGCA AACGCAGCATTTTGGATGCCATGTCCGAACCCTCCTATCCTCATTTGGCG GACCGACCTTACCTGCGACAACCCATTCCATTGACTTCTCCAAACGACCC CGCAAATCGCATTAAATATGAAGTGACACTGGAAATTGACGAAGACATCG TGGAAGGCTACTTGGCTTGGATCCAAGAAGGACACATCCAAGAGGTCATG GCGCTGCCCGGCTTTGTGGGATGGAACATTTCGGCTTCGGAGGATAGCAT AGCTGCAAGTCGGGGGATACATGGTCAACGCCGTGTGGTTTTTGTGGAGC AGTATGAGGTCGAGTCTCGAGAGTTTCTGGAGAAGTATTTCGTCAAATAT GCTCAGAGGATTCGCGACGATCATTCCCGGATGTGGGAAGGCAAGTTTGC CGCCTCGCGGCGCATTCTCCACACGTTCGGCCGCCAGACTGACAAGGAAG CTGAGCTTTGGAAGCAGCGCGATGCAAAAAACAGCTTCCGTCTTAATAAT TTGCGGTACCAGGTTGATCGAGTGCCTCGATTCACATCCGAGGGTCTGAA GGTCCAAGCTCTACCGTCTTCGTTGTGGGAAACACTGAAGCAGTTTTACC GGGCGCGCCGGCACGAGTCCGTGGAGGACCGCCTCGACCCGTCGGAGATT TCGATCAATACCTGGGTATCGCCCACTCTGCGCCTCGATCTCCCTCCCGC TTTGGCATCCGAGGTCGTCGGCACGCTCAAACCCATTCTTGAGTCCTGGT GCGGTGTGGCGGAGCTAGAGTCGACGGGTATCAGTGGCATTCGTACCTAC CTTCCCGGCGCCACCATCCAAGAGCACGTGGACATGGCGACCACCAATGT CGTGTCCGCGCTTATCAACCTGGACCAGGATGTGAAGGAGCCCTGGCCTT TTGAAATGAGGGATCATTCTGGCAAGCTCCACGCCTTGCATATGCGGCCC GGGGAGGTGGTCATGTATGAATCTGCGACGTGCGCACACCGGCGTTCTCG CCCGCTGCCACCTGGAGGCTACTACACGAATCTGTTTCTCCGTTTCAAGC CTAAGGGATGGACATTTACATACTAG back to top
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