EWM25829.1, cds4873 (CDS) Nannochloropsis gaditana

Overview
NameEWM25829.1
Unique Namecds4873
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002464.1:590121..591446 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM25829.1
ProductProtein of unknown function DUF4286
Orig transcript idgnl|cribi|Naga_100021g63.8772.mrna
GbkeyCDS
Noteencoded by transcript variant 1; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:590121..591446 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR025563DUF4286
Homology
BLAST of EWM25829.1 vs. NCBI_GenBank
Match: gi|585107696|gb|EWM25829.1| (Protein of unknown function DUF4286 [Nannochloropsis gaditana] >gi|585107697|gb|EWM25830.1| Protein of unknown function DUF4286 [Nannochloropsis gaditana])

HSP 1 Score: 920.613 bits (2378), Expect = 0.000e+0
Identity = 441/441 (100.00%), Postives = 441/441 (100.00%), Query Frame = 0
Query:    1 MPPHGETDVYHAHYTGLQGRFGTLQLAMMHHLPRLSMRCNSLACKGLFAPFALTFRSQGSSAFPQAASTQRCWPPPHLSHEDGKRSILDAMSEPSYPHLADRPYLRQPIPLTSPNDPANRIKYEVTLEIDEDIVEGYLAWIQEGHIQEVMALPGFVGWNISASEDSIAASRGIHGQRRVVFVEQYEVESREFLEKYFVKYAQRIRDDHSRMWEGKFAASRRILHTFGRQTDKEAELWKQRDAKNSFRLNNLRYQVDRVPRFTSEGLKVQALPSSLWETLKQFYRARRHESVEDRLDPSEISINTWVSPTLRLDLPPALASEVVGTLKPILESWCGVAELESTGISGIRTYLPGATIQEHVDMATTNVVSALINLDQDVKEPWPFEMRDHSGKLHALHMRPGEVVMYESATCAHRRSRPLPPGGYYTNLFLRFKPKGWTFTY 441
            MPPHGETDVYHAHYTGLQGRFGTLQLAMMHHLPRLSMRCNSLACKGLFAPFALTFRSQGSSAFPQAASTQRCWPPPHLSHEDGKRSILDAMSEPSYPHLADRPYLRQPIPLTSPNDPANRIKYEVTLEIDEDIVEGYLAWIQEGHIQEVMALPGFVGWNISASEDSIAASRGIHGQRRVVFVEQYEVESREFLEKYFVKYAQRIRDDHSRMWEGKFAASRRILHTFGRQTDKEAELWKQRDAKNSFRLNNLRYQVDRVPRFTSEGLKVQALPSSLWETLKQFYRARRHESVEDRLDPSEISINTWVSPTLRLDLPPALASEVVGTLKPILESWCGVAELESTGISGIRTYLPGATIQEHVDMATTNVVSALINLDQDVKEPWPFEMRDHSGKLHALHMRPGEVVMYESATCAHRRSRPLPPGGYYTNLFLRFKPKGWTFTY
Sbjct:    1 MPPHGETDVYHAHYTGLQGRFGTLQLAMMHHLPRLSMRCNSLACKGLFAPFALTFRSQGSSAFPQAASTQRCWPPPHLSHEDGKRSILDAMSEPSYPHLADRPYLRQPIPLTSPNDPANRIKYEVTLEIDEDIVEGYLAWIQEGHIQEVMALPGFVGWNISASEDSIAASRGIHGQRRVVFVEQYEVESREFLEKYFVKYAQRIRDDHSRMWEGKFAASRRILHTFGRQTDKEAELWKQRDAKNSFRLNNLRYQVDRVPRFTSEGLKVQALPSSLWETLKQFYRARRHESVEDRLDPSEISINTWVSPTLRLDLPPALASEVVGTLKPILESWCGVAELESTGISGIRTYLPGATIQEHVDMATTNVVSALINLDQDVKEPWPFEMRDHSGKLHALHMRPGEVVMYESATCAHRRSRPLPPGGYYTNLFLRFKPKGWTFTY 441          
BLAST of EWM25829.1 vs. NCBI_GenBank
Match: gi|1189700694|ref|WP_085759061.1| (hypothetical protein [Oceanicoccus sagamiensis] >gi|1189028276|gb|ARN74895.1| hypothetical protein BST96_12680 [Oceanicoccus sagamiensis])

HSP 1 Score: 141.354 bits (355), Expect = 5.060e-34
Identity = 69/180 (38.33%), Postives = 108/180 (60.00%), Query Frame = 0
Query:  258 VPRFTSEGLKVQALPSSLWETLKQFYRARRHESVEDRLDPSEISINTWVSPTLRLDLPPALASEVVGTLKPILESWCGVAELESTGISGIRTYLPGATIQEHVDMATTNVVSALINLDQDVKEPWPFEMRDHSGKLHALHMRPGEVVMYESATCAHRRSRPLPPGGYYTNLFLRFKPKGW 437
            +P FT  G +   +PS +++ +K FY++ +H  ++++L     SI     P+  L+LP  L  E++ TL P+ E W G  +L  T I G+R+Y  GA +  HVD   T+++SA+IN+DQ V + WP    DH G+LH ++++PGE++ YESA   H R  PL  G  + NLF+  +P GW
Sbjct:  207 IPAFTEIGFEKFQVPSEIYQKIKAFYQSNKHLEIDEKLGKRLTSIKK-NHPSSYLELPDVLRQEMIDTLAPMFEQWSG-QKLLITSIYGVRSYKKGANLSMHVDRYRTHIISAIINVDQAVTKKWPLHAYDHFGRLHRIYLKPGEMIFYESARVPHGRPTPL-NGKNFANLFIHAQPVGW 383          
BLAST of EWM25829.1 vs. NCBI_GenBank
Match: gi|585113156|gb|EWM30492.1| (hypothetical protein Naga_100013g87 [Nannochloropsis gaditana])

HSP 1 Score: 135.961 bits (341), Expect = 1.156e-31
Identity = 72/205 (35.12%), Postives = 112/205 (54.63%), Query Frame = 0
Query:  230 TDKEAELWKQRDAKNSFRLNNLRYQVDRVPRFTSEGLKVQALPSSLWETLKQFYRARRHESVEDRLDPSEISINTWVSPTLRLDLPPALASEVVGTLKPILESWCGVAELESTGISGIRTYLPGATIQEHVDMATTNVVSALINLDQDVKEPWPFEMRDHSGKLHALHMRPGEVVMYESATCAHRRSRPLPPGGYYTNLFLRFKP 434
             + +A++W+ R   N  RL     Q   V ++T  G K   +PS L   L ++      + +++     ++ +N +   T  +     +   V  TLKPILESW G  +L  T   GIR Y  G+ +++HVD+  T++VSA++N+ QDV E WP  + DH G+ H ++M PGE+ +YESAT  H R++ L  G Y+ NLF  F P
Sbjct:  258 NENQADVWRGRQNTNVARLRQNELQPSTVKKYTGGGFKKMLMPSYLHTRLLEYLARHEDQRMDEPWHKDDLHVNFYEKMTTIVYTDRDMRDIVFKTLKPILESWVGGEKLMPTSTYGIRRYYNGSILRDHVDIGRTHIVSAILNVRQDVDEVWPLSILDHQGRRHFINMAPGEMCLYESATALHGRTQAL-RGRYFDNLFAHFAP 461          
BLAST of EWM25829.1 vs. NCBI_GenBank
Match: gi|553189959|ref|XP_005855109.1| (prolyl 4-hydroxylase, partial [Nannochloropsis gaditana CCMP526] >gi|422293952|gb|EKU21252.1| prolyl 4-hydroxylase, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 135.191 bits (339), Expect = 1.781e-31
Identity = 72/205 (35.12%), Postives = 111/205 (54.15%), Query Frame = 0
Query:  230 TDKEAELWKQRDAKNSFRLNNLRYQVDRVPRFTSEGLKVQALPSSLWETLKQFYRARRHESVEDRLDPSEISINTWVSPTLRLDLPPALASEVVGTLKPILESWCGVAELESTGISGIRTYLPGATIQEHVDMATTNVVSALINLDQDVKEPWPFEMRDHSGKLHALHMRPGEVVMYESATCAHRRSRPLPPGGYYTNLFLRFKP 434
             + +A++W+ R   N  RL     Q   V ++T  G K   +PS L   L ++      + +++     ++ +N +   T  +     +   V  TLKPILESW G  +L  T   GIR Y  G+ +++HVD+  T++VSA++N+ QDV E WP  + DH G+ H + M PGE+ +YESAT  H R++ L  G Y+ NLF  F P
Sbjct:  248 NENQADVWRGRQNTNVARLRQNELQPSTVKKYTGGGFKKMLMPSYLHTRLLEYLARHEDQRMDEPWHKDDLHVNFYEKMTTIVYTDRDMRDIVFKTLKPILESWVGGEKLMPTSTYGIRRYYNGSILRDHVDIGRTHIVSAILNVRQDVDEVWPLSILDHQGRRHFIDMAPGEMCLYESATALHGRTQAL-RGRYFDNLFAHFAP 451          
BLAST of EWM25829.1 vs. NCBI_GenBank
Match: gi|569371831|gb|ETO11666.1| (hypothetical protein RFI_25710 [Reticulomyxa filosa])

HSP 1 Score: 129.798 bits (325), Expect = 3.043e-31
Identity = 66/179 (36.87%), Postives = 98/179 (54.75%), Query Frame = 0
Query:  258 VPRFTSEGLKVQALPSSLWETLKQFYRARRHESVEDRLDPSEISINTWVSPTLRLDLPPALASEVVGTLKPILESWCGVAELESTGISGIRTYLPGATIQEHVDMATTNVVSALINLDQ--DVKEPWPFEMRDHSGKLHALHMRPGEVVMYESATCAHRRSRPLPPGGYYTNLFLRFKP 434
            V  FT+ G     L   +++ L  F++  + +   +    +   +N   SPT    LP +    +   ++P LE+W  +  LE T + GIR Y  GA +  HVD   T+V+SA+IN+D   D  + WP ++ DH G LH   M+PG+V+ YESA C H R +PL PG YY N+F+ FKP
Sbjct:   24 VRNFTATGFAPSHLDDEIFQALTDFWKTAQEQGDLNEEGAAGPVMNQQKSPTFMAYLPESERQALTDWIRPKLETWANIPSLELTSLYGIRMYTRGAILGMHVDTCGTHVISAIINVDSKLDQGKDWPLQIYDHEGTLHEFTMKPGDVMFYESAKCGHSRFKPL-PGEYYANIFIHFKP 201          
BLAST of EWM25829.1 vs. NCBI_GenBank
Match: gi|299473295|emb|CBN77694.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 127.102 bits (318), Expect = 1.485e-28
Identity = 76/211 (36.02%), Postives = 111/211 (52.61%), Query Frame = 0
Query:  227 GRQTDKEAELWKQRDAKNSFRLNNLRYQVDRVPRFTSEGLKVQALPSSLWETLKQFYRA-RRHESVEDRLDPSEISIN-TWVSPTLRLDLPPALASEVVGTLKPILESWCGVAELESTGISGIRTYLPGATIQEHVDMATTNVVSALINLDQDVKEPWPFEMRDHSGKLHALHMRPGEVVMYESATCAHRRSRPLPPGGYYTNLFLRFKPK 435
            G +T ++      R   +  RL N R Q + +PRFT  G K   +P  +W+ +K +Y   +R   +     P+      TW   T R +    L  ++ G L+PILE W GV EL  T   G+R Y   + +  HVD   T+ VS ++ +DQDV+E WP  + DH+G  + + M+P ++V+YESATC H R      G YY N F+ FKPK
Sbjct:  249 GAETPQDIASRNARRQMDQGRLVNNRKQPEGLPRFTEVGFKKITVPDDVWDLVKTYYEENKRRSGLRTTSSPTTWRRRATW--STCREN--GKLKEQIFGGLRPILEEWSGV-ELVQTACYGVRVYTNTSWLANHVDTKATHAVSVIMQVDQDVEEDWPLMIYDHAGNDYNITMKPRDLVLYESATCVHGRPSTF-HGNYYANAFVHFKPK 453          
BLAST of EWM25829.1 vs. NCBI_GenBank
Match: gi|522049543|ref|WP_020560752.1| (hypothetical protein [Thiothrix flexilis])

HSP 1 Score: 122.479 bits (306), Expect = 6.245e-27
Identity = 70/184 (38.04%), Postives = 102/184 (55.43%), Query Frame = 0
Query:  257 RVPRFTSEGLKVQALPSSLWETLKQFYRARRHESVEDRLDPSEISINTWVS------PTLRLDLPPALASEVVGTLKPILESWCGVAELESTGISGIRTYLPGATIQEHVDMATTNVVSALINLDQDVKEPWPFEMRDHSGKLHALHMRPGEVVMYESATCAHRRSRPLPPGGYYTNLFLRFKP 434
            ++P FT EG K   LP  L++T+ +FY+  +   V +  D    SI T++       P   ++L  AL   +  T+ P+LE W  + EL+ + I GIR Y  GAT++ HVD   T+ VS +IN+ Q V + W   + DH GK+H + M+PG+V+ YESA   H R  PL  G YY N+F    P
Sbjct:  291 QLPLFTPEGFKKTRLPDDLFQTITEFYQQGKANMVLEVND----SIGTYIQTTTERHPAKMIELSDALRQTIFTTICPLLEEWTQL-ELKPSAIYGIREYQRGATLKMHVDRIDTHQVSMIINVAQQVDQDWFLHIADHKGKIHKVTMQPGDVIFYESARLQHGRPEPL-EGEYYANIFAHTAP 468          
BLAST of EWM25829.1 vs. NCBI_GenBank
Match: gi|585101001|gb|EWM21003.1| (hypothetical protein Naga_100081g21 [Nannochloropsis gaditana])

HSP 1 Score: 118.627 bits (296), Expect = 1.495e-25
Identity = 66/207 (31.88%), Postives = 110/207 (53.14%), Query Frame = 0
Query:  230 TDKEAELWKQRDAKNSFRLNNLRYQVDRVPRFTSEGLKVQALPSSLWETLKQFYRARRHESVEDRLDP---SEISINTWVSPTLRLDLPPALASEVVGTLKPILESWCGVAELESTGISGIRTYLPGATIQEHVDMATTNVVSALINLDQDVKEPWPFEMRDHSGKLHALHMRPGEVVMYESATCAHRRSRPLPPGGYYTNLFLRFK 433
             +++  +W+ RD +N  R+     Q    PR+T+ G K   +P ++++ L       R+ S E  L+P   S+   N + +P+  + L  A  +++   + P L  W G  +L  T   GIR Y  G+ ++EHVD   T+++SA++N+DQDV+E W     DH+   H + + PG+ + YESA+  H R  PL  G  + N F+ FK
Sbjct:  256 VEEDMNIWRGRDVENKGRVVRNEVQPKTKPRYTALGFKKTRIPDAVYQVL-----LNRYHSGEHILEPWPKSDCHTNFFEAPSTMVYLSDAEKADIFSGMMPNLSKWAGGVKLHPTSCYGIRIYHNGSWLREHVDTGDTHIISAIMNVDQDVEEDWLLTFIDHNDNRHFVTLEPGDALYYESASGLHGRPIPL-KGKLFANAFVHFK 456          
BLAST of EWM25829.1 vs. NCBI_GenBank
Match: gi|1072229833|gb|OEU14567.1| (hypothetical protein FRACYDRAFT_241115 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 119.013 bits (297), Expect = 3.295e-25
Identity = 62/180 (34.44%), Postives = 101/180 (56.11%), Query Frame = 0
Query:  261 FTSEGLKVQALPSSLWETLKQFYRARRHESVEDRLDPSEISINTWVSPTLRLDLPPALASEVVGTLKPILESWCGVAELESTGISGIRTYLPGATIQEHVDMATTNVVSALINLDQD-VKEPWPFEMRDHSGKLHALHMRPGEVVMYESATCAHRRSRPLP---PGGYYTNLFLRFKPKG 436
            F+S G  V  LP+ ++ ++  FY   RH  V +      + +N W +    + +P ++  +    L  ++  W GV E+E T + G+R Y  GA +  HVD  TT+ VS ++N+ QD +  PWP E+ DH+ +LH ++M+ G++V YESA   H R+RPL     G ++ NLF  ++PK 
Sbjct:  318 FSSLGFSVGRLPNDVFASMGSFYYNNRHNVVNEEWVGKGLFVNWWETDIKFIAMPWSIKQKWQHRLNELVSEWSGV-EVEETSMYGMRQYEQGARLLSHVDRLTTHAVSLIVNIAQDNLANPWPVEIFDHADRLHEVNMKAGDIVYYESAKNLHSRNRPLTCKEGGCHFVNLFTHYRPKA 496          
BLAST of EWM25829.1 vs. NCBI_GenBank
Match: gi|676383129|ref|XP_009034843.1| (hypothetical protein AURANDRAFT_62497 [Aureococcus anophagefferens] >gi|323454127|gb|EGB09997.1| hypothetical protein AURANDRAFT_62497 [Aureococcus anophagefferens])

HSP 1 Score: 117.472 bits (293), Expect = 5.819e-25
Identity = 73/196 (37.24%), Postives = 108/196 (55.10%), Query Frame = 0
Query:  254 QVDRVPRFTSEGLKVQALPSSLWETLKQFY-----RARRHESVEDRLDPSEISINTWVSPTLRLDLPPALASEVVGTLKPILESWC-GVAELESTGISGIRTYLPGATIQEHVDMATTNVVSALINLDQ-DVKEPWPFEMRDHSGKLHALHMRPGEVVMYESATCAHRRSRPLPPGGYYTNLFLRFKPK-GWTFTY 441
            Q+   P  T++G K+   P  +++ + QFY     R RR E+    L  ++  I TW +P     L   L + V   LK ++E W      L+ T   G+RTY  GA +  HVD A T+VVS ++N+ Q  V EPWP E+ DH+GKLHA++M PG+ ++YESA   H R RP   G  Y N+F+ + P+  W+  +
Sbjct:  314 QIAVTPNVTADGFKLIKTPPHVYDKVIQFYNASHDRIRRPEADGGPL-YNQRRIQTWHTP-----LEGRLKAYVFDELKRLMEDWAPTTVPLKGTSAYGVRTYERGAYLHLHVDTANTHVVSGIMNVAQAGVDEPWPLEILDHAGKLHAVNMEPGDFLLYESARLLHGRPRPF-RGDSYANIFVHYMPEHDWSVDF 502          
The following BLAST results are available for this feature:
BLAST of EWM25829.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585107696|gb|EWM25829.1|0.000e+0100.00Protein of unknown function DUF4286 [Nannochlorops... [more]
gi|1189700694|ref|WP_085759061.1|5.060e-3438.33hypothetical protein [Oceanicoccus sagamiensis] >g... [more]
gi|585113156|gb|EWM30492.1|1.156e-3135.12hypothetical protein Naga_100013g87 [Nannochlorops... [more]
gi|553189959|ref|XP_005855109.1|1.781e-3135.12prolyl 4-hydroxylase, partial [Nannochloropsis gad... [more]
gi|569371831|gb|ETO11666.1|3.043e-3136.87hypothetical protein RFI_25710 [Reticulomyxa filos... [more]
gi|299473295|emb|CBN77694.1|1.485e-2836.02conserved unknown protein [Ectocarpus siliculosus][more]
gi|522049543|ref|WP_020560752.1|6.245e-2738.04hypothetical protein [Thiothrix flexilis][more]
gi|585101001|gb|EWM21003.1|1.495e-2531.88hypothetical protein Naga_100081g21 [Nannochlorops... [more]
gi|1072229833|gb|OEU14567.1|3.295e-2534.44hypothetical protein FRACYDRAFT_241115 [Fragilario... [more]
gi|676383129|ref|XP_009034843.1|5.819e-2537.24hypothetical protein AURANDRAFT_62497 [Aureococcus... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4885rna4885Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications