rna4880, rna4880 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4880
Unique Name	rna4880
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2217
Alignment location	CM002464.1:573721..575590 -

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Properties


Property Name	Value
Product	NTP pyrophosphohydrolase MazG, putative catalytic core
Orig transcript id	gnl\|cribi\|Naga_100021g56.8747.mrna
Orig protein id	gnl\|cribi\|Naga_100021g56.8747
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002464.1	supercontig	CM002464.1:573721..575590 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100021g56	gene4714	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4880	rna4880-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25804.1	cds4868	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002464.1:573721..575590-
coding sequence from alignment at CM002464.1:573721..575590-

mRNA sequence

>rna4880 ID=rna4880|Name=rna4880|organism=Nannochloropsis gaditana|type=mRNA|length=2217bp
TTGCAGGCGGGGCTCTGCCGTGCTCTATCCAATGCATCCTTCTGGCGCAA
TTCCCCAGCTGTTGACATATGCATCTGCTTTTAGTTCGAAGTTGTGAGGT
AAATACAACTTCTTAGTGTGCACAGTTTAGCCCTAATTTTCGGTGGCCCC
GAAAGCAAGCAAGAGAGGTAAAGAACCTCGCTCGCGCGGAGCATCCAGGT
TATCATCTCTTCACGTTTCGTTCACCGTGGCTTGTGTCTTGTGCGCTAGG
TGCCGCAAAGGGGTAGATAGAACGCCGAGGCCTTTAGGCAGAGGATCAGC
TGAGATTTGGCCTTCGTGAAGCTCGTGGGTGTACACTTTTGTGCGTGTTT
TTGCGAAGGGATATGACAAGACCACCTGTCTCTTGAGGGCTATTTTGAGC
GTTTCCATGCCGTCAATCAAGCCGTCGCCATACGCACAGCCCAACACCCC
AATAGCTTCGGCCAAAAGGCCACGCACAGCTTTGAGACGGACGCATGGCA
CATCTCGTAAGGGGGCTGCAAGCAAGGGAAATCCAACACGTCTTCAAGAA
GACCTGGTCTGCTCCCCTTCCCCTGCTTGTCAGCTGGAGCGGACAAGTCC
GGAAACAGGCCATCCTTGTGAGAAAAAGGTTGATGTGTTGTATGCGGAGA
CCTCCAGCGCTTTTTACGACGGTAGCGAACACGATGGAGAAGACACCTGG
AAGGGTCGTGTAGCGTCTCTTTTCTCACCCGTGCTAAAATTTGTAGGTGG
CTCGCCTGAGGCTCAAGGTGCCGAAGGAAGAGGGAAGCAGCATGGAGCGA
ATTCCGGAGAGGGCGGAATCGACGGGGGCTTACACGGCCAAGAGAATGAC
ATTAACCGGAATAACCGACTAGCACAGCCTTTATCGATGGAAGAGAGCTG
TGATGAAGGAAAAGATGTGTCGCCGAATCAGCTGGAGACATGTGGAAAAG
AAAATGAGGAGGGGCTCATGGATGTGGAGCCGGTGTTCGATGACAGTGCT
GCTAGCGAGGACGGAGAGAAAGTTTCAATGAAAGAGGAGGAGGTCGAAGA
TGAAGGCATGGAGGACGAGGAATTGGAAGTCGTAGAGGAGTTCAATCCCT
TCCTGTTCATTAAACAACTCCCTCCTTACGAGCACGTAGCGATTCAGGGG
AAAATTTGTCTACCACAACGAAAGCAAACTCGGTCATCACATACATTGGG
CCCCTTGACCCTTGTGCTGGACCTGGATGAGACCTTGGTGCATTGCACTG
TGGAGCCTGTGCCGGACCCAGACGTCGTTTTTCCGGTGGATTTTAACGGA
GTGAGCTATCAGGTGCATGTACGAAAGCGTCCGCACCTGGAAGAGTTCCT
AGGTCGCGTGTCTAAGATGTTTGAGGTCGTCGTCTTCACGGCGTCGCAGC
AGGTCTATGCGGACGCGCTGCTTGACCTGATTGACCCTGGTCAGAGGCTG
ATAAAGCATCGGCTCTTCAGGGATGCATGCCTTCCTGTCGAAGGCAATTA
CATCAAGGACCTGCACGTTCTAGGCCGGGACATGGCACGCACGGTGCTGA
TTGACAATTCTCCGTATGCATATGGATACCAGATAGATAACGGCATTCCC
ATAGAGAGTTGGTTTGAAGATCGTGACGACATGGAATTACTGAAGCTTCT
TCCCTTTTTGGAGGAGTTGCAAAGAGTTGACGACGTCCGACCACTCATTC
GCACAGCATTTCAATCTCACCTCCGAGTGCACGAAGCCTAGTTTCGAGTT
GCTGTTCGATGGTGGGGAGTCGAGAAAGTGGTAGTCGTCCACGTGGCATA
AGCTGAGGATGTAAGGAGACGAACGCAAGGTGCTGTATTGGAAAGAGGGA
CGGGAAACTCGTGCGGTCGATATTGGTTAGAATGAAGGAGATGGGCAAGC
CTTACGCACTGGCTCGTTTGTATCGTTGAGGGGGAGCGTGACTGTAATGA
ACGCTTTGTGTGAATTTGTCCGTATCGCGATATGAAGATCGATATGCGTT
AGTTAACATCGATACTAGGATGCGAAGTTCCAAGTTTTTAAACCCTAAAA
TCATAGGGACGATATTGATTAAGCACTCCAGGAAGCCGTCGCGAAGCTTC
TAAAAGGAAAGAACCGTATACATAAATTTCGAGGAATTTTACAATACCTC
CAAAAGTGCGTTTTGCGGAAAGCAAACGATTAATTTCAAAAAGAATTTAA
GATGCTGATCTAAGAAC

protein sequence of rna4880

>rna4880-protein ID=rna4880-protein|Name=rna4880|organism=Nannochloropsis gaditana|type=polypeptide|length=302bp
MGQHDEHMAPLASIEFLRQAVQDTLKLSIIPITGLCLDVAHKAGLLAEIL
QWKSEEVTALVYDDIEFCHKMQIAAGELLVSILRLSAHSEIDLGAAAVAK
IDLNARKYPAQFCKGLAHKYDYYTAQTGIKKEGQSLGPEDQIFRPPPWDA
RLTISDLQTSLQAFVLERNWEKYHTPRNLLLALIGEVGELCEIVQATPAG
DSRSWPQAFKNELGQEIADVFIYLLRFADVCRLDLAKGMEIAIASGADKQ
LASKRHVIADVTAREQALGRSLRMLLPVRPFIAILMSSLSVIYVSVALLR
KR

mRNA from alignment at CM002464.1:573721..575590-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4880 ID=rna4880|Name=rna4880|organism=Nannochloropsis gaditana|type=mRNA|length=1870bp|location=Sequence derived from alignment at CM002464.1:573721..575590- (Nannochloropsis gaditana)
CTCGCGGTAGTCGATAGAGGTGGGAAACAGGCAGCAAAGGCATGTTCGTA
TGGAACCCCATGAGAGTGGCGAGTACTACTAGTAGTAAGTAGGGGAATCC
CTCACCCCTGAGAGAGCTCGCCCGGTTAAACAACGTGAACCGCGAGACTC
CGCGGCAAGCAAGGCGCGAGTGAGTGGCTGCCCACGTAAACACAAGCCAC
AAGTAACCCCTCCTTTGCTGTGTGTGCCCGCGCAAGAAAGATCAGGGGCA
GTCGACAACCCCTTTGCATTCCATTTCCTCTCGGACGCTCGGCTAGATCC
GCGAGCCTTTCTTTTCCCCCGCCACCTCGCGCAGTCTGTTAGCTAACCCT
AACCCTAACCCTAACCTCACTGAAATAAGAGCAGGCATATTTTCACTTGC
ATTGACTAGAAAGTGTCCCTCTATCACAGGCAAAGTGAGTCAAGGCATTT
CAGTGTAGAAACTTGTGGTGAATTAGTCATCTGTGCTTGAAGCAAAGCGA
TAATTGCAGGCTATTTAAAGAAATGGGACAGCACGATGAACATATGGCTC
CGCTCGCCTCTATCGAGTTTCTTCGTCAAGCTGTTCAAGATACTTTAAAA
TTGAGCATCATACCGATAACCGGGCTCTGCCTCGACGTGGCTCACAAAGC
TGGCCTACTGGCGGAGATCTTACAGTGGAAGAGTGAAGAAGTAACGGCTC
TCGTCTACGACGACATCGAATTTTGTCACAAAATGCAAATTGCAGCAGGA
GAACTTCTGGTCAGCATTCTCAGGTTGTCAGCCCATAGTGAGATTGATCT
GGGTGCTGCCGCTGTGGCCAAAATCGATCTCAATGCTCGCAAGTAAGAAG
AAGTGGAACATGAGGGTTCAAGGTGTGGGTGAGGCGCGTCAGCATGCTGT
ACCTATCAATTTGAACTCATGTTTGGTAGCAGTTCGCTTTTTTATAAAAA
CGTGGAAGTGTGGTATTGTTCATCGACTTATCTCTGTCTTAGATGTGCGC
GATAGTCGTACGCAGCTCCCTCTTGATGTCATTTCCCCATACTGTGGTCT
ACAGACTCTTCTACTTCTCATTTTGATTGAGGGTACCGACTATTTCCATC
ACTTCAATGCTTTTTGTTCAGATATCCGGCTCAATTTTGTAAGGGTCTTG
CGCACAAGTATGACTACTATACGGCACAGACAGGTATTAAAAAGGAGGGC
CAAAGCCTTGGCCCTGAGGATCAAATTTTTCGTCCCCCTCCCTGGGATGC
ACGCTTGACCATCAGCGACCTTCAGACGTCCTTGCAAGCCTTTGTTCTGG
AGCGAAATTGGGAAAAGTATCACACCCCTCGCAACCTCCTGCTCGCGCTT
ATCGGGGAAGTGGGGGAACTTTGTGAGATAGTGCAAGCTACACCTGCAGG
CGACAGTCGAAGCTGGCCTCAGGCTTTCAAAAATGAGCTAGGTCAAGAGA
TCGCGGACGTTTTTATCTATTTGCTTCGTTTCGCGGATGTCTGTAGATTG
GATCTGGCTAAGGGTATGGAAATCGCCATCGCCTCTGGGGCTGACAAACA
GTTGGCCTCAAAAAGACATGTTATTGCCGATGTGACAGCACGGGAGCAAG
CCCTTGGAAGATCCCTGAGGATGTTGCTGCCTGTCCGCCCATTTATTGCA
ATACTCATGAGCAGTCTCTCTGTGATTTATGTGAGCGTCGCACTTCTGAG
AAAGCGGTAGTATCGTATGTTCTTAGATCAGCATCTTAAATTCTTTTTGA
AATTAATCGTTTGCTTTCCGCAAAACGCACTTTTGGAGGTATTGTAAAAT
TCCTCGAAATTTATGTATACGGTTCTTTCCTTTTAGAAGCTTCGCGACGG
CTTCCTGGAGTGCTTAATCA

Coding sequence (CDS) from alignment at CM002464.1:573721..575590-

>rna4880 ID=rna4880|Name=rna4880|organism=Nannochloropsis gaditana|type=CDS|length=1818bp|location=Sequence derived from alignment at CM002464.1:573721..575590- (Nannochloropsis gaditana)
ATATCCGGCTCAATTTTGTAAGGGTCTTGCGCACAAGTATGACTACTATA
CGGCACAGACAGGTATTAAAAAGGAGGGCCAAAGCCTTGGCCCTGAGGAT
CAAATTTTTCGTCCCCCTCCCTGGGATGCACGCTTGACCATCAGCGACCT
TCAGACGTCCTTGCAAGCCTTTGTTCTGGAGCGAAATTGGGAAAAGTATC
ACACCCCTCGCAACCTCCTGCTCGCGCTTATCGGGGAAGTGGGGGAACTT
TGTGAGATAGTGCAAGCTACACCTGCAGGCGACAGTCGAAGCTGGCCTCA
GGCTTTCAAAAATGAGCTAGGTCAAGAGATCGCGGACGTTTTTATCTATT
TGCTTCGTTTCGCGGATGTCTGTAGATTGGATCTGGCTAAGGGTATGGAA
ATCGCCATCGCCTCTGGGGCTGACAAACAGTTGGCCTCAAAAAGACATGT
TATTGCCGATGTGACAGCACGGGAGCAAGCCCTTGGAAGATCCCTGAGGA
TGTTGCTGCCTGTCCGCCCATTTATTGCAATACTCATGAGCAGTCTCTCT
GTGATTTATGTGAGCGTCGCACTTCTGAGAAAGCGGTAGATGGGACAGCA
CGATGAACATATGGCTCCGCTCGCCTCTATCGAGTTTCTTCGTCAAGCTG
TTCAAGATACTTTAAAATTGAGCATCATACCGATAACCGGGCTCTGCCTC
GACGTGGCTCACAAAGCTGGCCTACTGGCGGAGATCTTACAGTGGAAGAG
TGAAGAAGTAACGGCTCTCGTCTACGACGACATCGAATTTTGTCACAAAA
TGCAAATTGCAGCAGGAGAACTTCTGGTCAGCATTCTCAGGTTGTCAGCC
CATAGTGAGATTGATCTGGGTGCTGCCGCTGTGGCCAAAATCGATCTCAA
TGCTCGCAAATATCCGGCTCAATTTTGTAAGGGTCTTGCGCACAAGTATG
ACTACTATACGGCACAGACAGGTATTAAAAAGGAGGGCCAAAGCCTTGGC
CCTGAGGATCAAATTTTTCGTCCCCCTCCCTGGGATGCACGCTTGACCAT
CAGCGACCTTCAGACGTCCTTGCAAGCCTTTGTTCTGGAGCGAAATTGGG
AAAAGTATCACACCCCTCGCAACCTCCTGCTCGCGCTTATCGGGGAAGTG
GGGGAACTTTGTGAGATAGTGCAAGCTACACCTGCAGGCGACAGTCGAAG
CTGGCCTCAGGCTTTCAAAAATGAGCTAGGTCAAGAGATCGCGGACGTTT
TTATCTATTTGCTTCGTTTCGCGGATGTCTGTAGATTGGATCTGGCTAAG
GGTATGGAAATCGCCATCGCCTCTGGGGCTGACAAACAGTTGGCCTCAAA
AAGACATGTTATTGCCGATGTGACAGCACGGGAGCAAGCCCTTGGAAGAT
CCCTGAGGATGTTGCTGCCTGTCCGCCCATTTATTGCAATACTCATGAGC
AGTCTCTCTGTGATTTATGTGAGCGTCGCACTTCTGAGAAAGCGGTAGAT
GGGACAGCACGATGAACATATGGCTCCGCTCGCCTCTATCGAGTTTCTTC
GTCAAGCTGTTCAAGATACTTTAAAATTGAGCATCATACCGATAACCGGG
CTCTGCCTCGACGTGGCTCACAAAGCTGGCCTACTGGCGGAGATCTTACA
GTGGAAGAGTGAAGAAGTAACGGCTCTCGTCTACGACGACATCGAATTTT
GTCACAAAATGCAAATTGCAGCAGGAGAACTTCTGGTCAGCATTCTCAGG
TTGTCAGCCCATAGTGAGATTGATCTGGGTGCTGCCGCTGTGGCCAAAAT
CGATCTCAATGCTCGCAA

Synonyms

Publications