rna4879, rna4879 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4879
Unique Name	rna4879
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3548
Alignment location	CM002464.1:571538..573872 +

Link to JBrowse

Properties


Property Name	Value
Product	nuclear lim interactor-interacting protein
Orig transcript id	gnl\|cribi\|Naga_100021g55.8737.mrna
Orig protein id	gnl\|cribi\|Naga_100021g55.8737
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002464.1	supercontig	CM002464.1:571538..573872 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100021g55	gene4713	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4879	rna4879-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25794.1	cds4867	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002464.1:571538..573872+
coding sequence from alignment at CM002464.1:571538..573872+

mRNA sequence

>rna4879 ID=rna4879|Name=rna4879|organism=Nannochloropsis gaditana|type=mRNA|length=3548bp
GCCTCCGTCACGCCGCTTCGCAAACACCTCTCTCCTGCCAGATGCGCCCG
TATAAAGCTAACAAGGAATTCTCCCCGGAAGGCCTCCCATATTCTGTTCA
TCACAGTCCTCGCCATTCAAACCATGTCTCTCACATGAACACCTTCTTCT
TCGAGACAGATCAACTGCATGGCGACTGCGGGTGTTATGGAAACGCTGCA
GCCCTTGAGCGTAGGAGATGGAGCCACTACTGTGTCGGGCTTGTTGGCTC
TCTTGGAGGAGGACAACACACGCCTAACTATTTATGCCTTGCAGAAGCTA
CACGCCGTGGTGGATAGATTTTGGGCCGAGGTGGCCACTGCGCTTCCTTT
AATTGAGGAGTTGTCGGAGGACGATGCATACGAGGCTCGAGACTTGGCGG
CATTTGTGGCCTCCAAAGTCTTTTTTCACTTAGAAGAGTACGACGATGCG
CTTCGACTCGGTCTTGGTGCAGGCTCATACTTCGATGTAAGTAAAAAGAC
TGAATATGTCGAGACCCTTGTAGCTAAGGCGTTCGACGAGTATGTCCGTC
TCCGCGAACGGCTCGTCCTCGTCGACAACTCTTCTGCGACTATCGATCCC
CGGCTGGAGACCATCGTTGAAAAGATGTTCGAACGCTGCTTTTTGGACGG
GGCTTTCAACCAGGCTGTGGGCATTGCTCTGGAGGCCCACCGTCTAGACA
AGATCGAAGAGGCGATAAATCGGGCCCCGGCAAAAGGCCTGCTGATTGCC
CACATTTTCAAGATTAGCCAAACGCTCATCTTGAGCCGACACTTTCGTCT
TCAGGTGCTGGACGTTTTAGTCCGTGTACACTCCGCGGTTATAGATCCTG
AGTACGTATCGATCTGTCAGTGCATGCAGTTTCTGAATAAAGCGAGCGAC
GTGGCTGAAATTCTGGACAAGTTATTGCAGGGATCAGAAGAGAAGGCGCT
CTTGGCTTACCAGGTCGCCTTTGAGTTAGTTGAGAGCGAGAACCAGCACT
TCTTGCTGGATGTCAATACAGCGCTCTTCCCACCTGTTGCTACAGCTGTG
GATGCCTCTGCTGGCGAGAATGCCGAGGAAAGCAAGGAAGGTGGCGGGAG
CGCAGAGCCAACGTCTGTGCCTCCCGCTGCATCGGAGACGCCTGTCCTCG
CTGGATCTGTGCCAGAGGGCGCACCTGTAGAGTACCTTGAACGTAAAATG
CAGCTTAAACAGATATTGGTGGACGGCTTTTCAATCGACTTGACGCTGGA
TTTCCTCTACCGCCACAACAACACGGACCTTCTTATCCTGCGCAACATAA
AAACCGCTATCGAGAACAGAAATTCCGTGCTGCACGGGGCCACAGTCGTG
GCACACGGATACATGAATGCTGGCACTACCACTGACACATTTCTGCGCGA
GAACCTGGAATGGTTGGGCCGGGCGTCCAACTGGGCCAAGTTCACAGCCA
CGGCCTCTATCGGGGTGGTGCACAAGGGGCACGTGAAGGAGAGCATGAAT
CTACTGCAGCCCTATTTGCCCCAAGGCGGGATTTCAACAAGCCCGTACTC
CGAAGGCGGAGCTTTATATGCTTTAGGTCTCATCCATGCCAGTAAAGGGG
GTGCTGGTAACCATGACACCATAAACTACCTTCAAACTGCCTTGCAAAGC
GCAGGAGTGAACGAAGTACTGCAGCACGGAGCATGTTTAGGCCTTGGTCT
AGCCGCAGTAGGATCAGCCAAAGAGGAACTCTTTGAAGACCTTAAACAAG
CCCTCTTCTCGGACAACGCCGTGGCTGGCGAGGCGGCAGCCCTCTCAATT
GGTCTTCTGCTTCTTGGCGCAGGTGCCGCCAGCCCGCTATCTGAGGGCGC
CATCAAAGAGCTTCTTAGCTATGCGCACGACACACAACACGAGAAGATTA
TCCGCGGACTTGCATTGGCGCTGGCTTTAATAATGTATGGGCAGGAGGAA
AATGCAGAGTCTTTGATTGAGCAGCTTACTCGCGACCGAGATCCCATTCT
GCGGTATGGTGCCATGTTCACGATAGGTCTGGCTTACGCTGGCACAGCGA
ACAACTCAGGCGTTCGCCGACTTCTGCACGTCGCCGTGTCGGATGTTTCC
GATGACGTGCGCCGTGCTGCTGTCATCAGTCTGGGCTTCGTCCTCTTCCG
CACCGCTGAGCAGGTCCCGCGTTTGGTTTCGCTCCTAGCCGAGAGCTTCA
ATCCTCACGTCCGCTACGGATCTTGTCTGGCCGTAGGTATTGCCTGCGCA
GGTACTGGTAGTCCTGAGGCTATAGCCTTGCTGGATCCCATGCTTGACGA
TGTGGCAGACTACGTTCGCCAAGCTGCGATGCTGGGGCTTTCCATGGTCT
ATATGCAGCAGTCCGAGGCTCGAGTGCCCAAGGTTAAAGCTTTCCGGCAG
CGTCTCGCACGCATTATTCCTGATAAACATCAGTCCACCATGACAAAGCT
CGGGGCCATCTTGGCTACCGGCATCCTGGATGCAGGTGGCCGCAATGTAA
CGTTGAATATGCAGTCAGGTGCCGGATTCATCAAAAGCACAGCTGTCGTA
GGGCTGGCGGTCTGGGTGCAATATTGGTATTGGTACCCTCTTATGCATTT
CCTTTCGCTAGCCTTTACACCCACCTTCCTGATCGGTTTGAACAAAGATT
TGAAGATCCCCAACAAGTTCGGCACCTCTTGTGGTGCCCGTCCTTCGACG
TTTGCGTACCCAAAGAAATTAGAGGAGAAGAAGGAGGAAAAGAAGGAGCG
AGTGGTTACAGCTGTACTTTCTACCACCGCGAAGGCAAAGGCCCGGGAGG
CAAAAAAAAAGGCAGGCGAGGACGCGCATCACATGGATGTCGAAGTGCCA
GGTGCAAGTGCTGCAGATCCTAAAAGCAATGTCATGATAAGCAATGCGGG
CGAGAGCGGACCTCAGACCTTCGAGAAAGGAGTTGACGTGGCAGAGGAGG
GAAGCCCTGGGAAGGACGTGAAGGCTGAAGGGGAGGCTATGGCGAACGGG
AAAAGGGGAGCCGAAACAGAGCCTACCACATACATGCTAGGCAATCCAGC
TCGCGTAACTCAGGCACAGGAAAATGTCATTTCCTTCTTGCTGGATGAAG
ACCAGCGCTATGTACCTGTATGCCGGAGTTCCAGACCAACGGGCATCATT
ATGCTCATGGATCGTCAACCAGGAGAGCCTGAAGACGTAGCAGACGTGGA
GAGCCCTCCTCTTGAGGGCGAGGAGGAAGAGGCAGAGGTCCCTGCGCCTT
TCGAGTGGACTGTGAACTGATAAACACGAAAAGCATCATGGGCTGATTGC
AGACGTTGTACTAGGTATTTTTCAAACTTTGAGGCGGGGGTAACTTATAA
GAAGTGAACCTGAAAGGAAATCCTGTCATGACAATGTTTGTTAGGAAGGT
CTGGGACGGAATCAAACGAAAAGAAAGAGCGAGCCTAGCAAGGGCGAAAT
GATTTTCACTGAAACTAGCATTGCTTTTATCCACGCAACGCTTGTAACCA
CTGGGTACGAGTGTGCTGCACAACATTGATGACTGAATGCCACGCCCC

protein sequence of rna4879

>rna4879-protein ID=rna4879-protein|Name=rna4879|organism=Nannochloropsis gaditana|type=polypeptide|length=444bp
MPSIKPSPYAQPNTPIASAKRPRTALRRTHGTSRKGAASKGNPTRLQEDL
VCSPSPACQLERTSPETGHPCEKKVDVLYAETSSAFYDGSEHDGEDTWKG
RVASLFSPVLKFVGGSPEAQGAEGRGKQHGANSGEGGIDGGLHGQENDIN
RNNRLAQPLSMEESCDEGKDVSPNQLETCGKENEEGLMDVEPVFDDSAAS
EDGEKVSMKEEEVEDEGMEDEELEVVEEFNPFLFIKQLPPYEHVAIQGKI
CLPQRKQTRSSHTLGPLTLVLDLDETLVHCTVEPVPDPDVVFPVDFNGVS
YQVHVRKRPHLEEFLGRVSKMFEVVVFTASQQVYADALLDLIDPGQRLIK
HRLFRDACLPVEGNYIKDLHVLGRDMARTVLIDNSPYAYGYQIDNGIPIE
SWFEDRDDMELLKLLPFLEELQRVDDVRPLIRTAFQSHLRVHEA

mRNA from alignment at CM002464.1:571538..573872+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4879 ID=rna4879|Name=rna4879|organism=Nannochloropsis gaditana|type=mRNA|length=2335bp|location=Sequence derived from alignment at CM002464.1:571538..573872+ (Nannochloropsis gaditana)
TTGCAGGCGGGGCTCTGCCGTGCTCTATCCAATGCATCCTTCTGGCGCAA
TTCCCCAGCTGTTGACATATGCATCTGCTTTTAGTTCGAAGTTGTGAGGT
AAATACAACTTCTTAGTGTGCACAGTTTAGCCCTAATTTTCGGTGGCCCC
GAAAGCAAGCAAGAGAGGTAAAGAACCTCGCTCGCGCGGAGCATCCAGGT
TATCATCTCTTCACGTTTCGTTCACCGTGGCTTGTGTCTTGTGCGCTAGG
TGCCGCAAAGGGGTAGATAGAACGCCGAGGCCTTTAGGCAGAGGATCAGC
TGAGATTTGGCCTTCGTGAAGCTCGTGGGTGTACACTTTTGTGCGTGTTT
TTGCGAAGGGATATGACAAGACCACCTGTCTCGTGAGTTTTTCGTTGCAT
TAACGATACCTGCGCATGACTTGTCGATTAAAACATGAAAAGCACTCTTA
CTCACCTTCAGTCTCCTTTACTGTGCATCCACTTATAAATCTCCATGTAG
TTGAGGGCTATTTTGAGCGTTTCCATGCCGTCAATCAAGCCGTCGCCATA
CGCACAGCCCAACACCCCAATAGCTTCGGCCAAAAGGCCACGCACAGCTT
TGAGACGGACGCATGGCACATCTCGTAAGGGGGCTGCAAGCAAGGGAAAT
CCAACACGTCTTCAAGAAGACCTGGtctgctccccttcccctgcttgtCA
GCTGGAGCGGACAAGTCCGGAAACAGGCCATCCTTGTGAGAAAAAGGTTG
ATGTGTTGTATGCGGAGACCTCCAGCGCTTTTTACGACGGTAGCGAACAC
GATGGAGAAGACACCTGGAAGGGTCGTGTAGCGTCTCTTTTCTCACCCGT
GCTAAAATTTGTAGGTGGCTCGCCTGAGGCTCAAGGTgccgaaggaagag
ggaagcagcATGGAGCGAATTCCGGAGAGGGCGGAATCGACGGGGGCTTA
CACGGCCAAGAGAATGACATTAACCGGAATAACCGACTAGCACAGCCTTT
ATCGATGGAAGAGAGCTGtgatgaaggaaaagatgtgTCGCCGAATCAGC
TGGAGACatgtggaaaagaaaatgaggaggggCTCATGGATGTGGAGCCG
GTGTTCGATGACAGTGCTGCTagcgaggacggagagaaAGTTTcaatgaa
agaggaggaggtcgaagatgaaggcatggaggacgaggaattGGAAGTCG
TAGAGGAGTTCAATCCCTTCCTGTTCATTAAACAACTCCCTCCTTACGAG
CACGTAGCGATTCAGGGGAAAATTTGTCTACCACAACGAAAGCAAACTCG
GTCATCACATACATTGGGCCCCTTGACCCTTGTGCTGGACCTGGATGAGA
CCTTGGTGCATTGCACTGTGGAGCCTGTGCCGGACCCAGACGTCGTTTTT
CCGGTGGATTTTAACGGAGTGAGCTATCAGGTGCATGTACGAAAGCGTCC
GCACCTGGAAGAGTTCCTAGGTCGCGTGTCTAAGATGTTTGAGGTCGTCG
TCTTCACGGCGTCGCAGCAGGTCTATGCGGACGCGCTGCTTGACCTGATT
GACCCTGGTCAGAGGCTGATAAAGCATCGGCTCTTCAGGGATGCATGCCT
TCCTGTCGAAGGCAATTACATCAAGGACCTGCACGTTCTAGGCCGGGACA
TGGCACGCACGGTGCTGATTGACAATTCTCCGTATGCATATGGATACCAG
ATAGATAACGGCATTCCCATAGAGAGTTGGTTTGAAGATCGTGACGACAT
GGAATTACTGAagcttcttccctttttggAGGAGTTGCAAAGAGTTGACG
ACGTCCGACCACTCATTCGCACAGCATTTCAATCTCACCTCCGAGTGCAC
GAAGCCTAGTTTCGAGTTGCTGTTCGATGGTGGGGAGTCGAGAAAGTGGT
AGTCGTCCACGTGGCATAAGCTGAGGATGTAAGGAGACGAACGCAAGGTG
CTGTAttggaaagagggacgggaaacTCGTGCGGTCGATATTGGTTAGAA
TGAAGGAGATGGGCAAGCCTTACGCACTGGCTCGTTTGTATCGTTGAGGG
GGAGCGTGACTGTAATGAACGCTTTGTGTGAATTTGTCCGTATCGCGATA
TGAAGATCGATATGCGTTAGTTAACATCGATACTAGGATGCGAAGTTCCA
AGTTTTTAAACCCTAAAATCATAGGGACGATATTGATTAAGCACTCCAGG
AAGCCGTCGCGAAGCTTCTAAAAGGAAAGAACCGTATACATAAATTTCGA
GGAATTTTACAATACCTCCAAAAGTGCGTTTTGCGGAAAGCAAACGATTA
ATTTCAAAAAGAATTTAAGATGCTGATCTAAGAAC

Coding sequence (CDS) from alignment at CM002464.1:571538..573872+

>rna4879 ID=rna4879|Name=rna4879|organism=Nannochloropsis gaditana|type=CDS|length=1335bp|location=Sequence derived from alignment at CM002464.1:571538..573872+ (Nannochloropsis gaditana)
ATGCCGTCAATCAAGCCGTCGCCATACGCACAGCCCAACACCCCAATAGC
TTCGGCCAAAAGGCCACGCACAGCTTTGAGACGGACGCATGGCACATCTC
GTAAGGGGGCTGCAAGCAAGGGAAATCCAACACGTCTTCAAGAAGACCTG
GtctgctccccttcccctgcttgtCAGCTGGAGCGGACAAGTCCGGAAAC
AGGCCATCCTTGTGAGAAAAAGGTTGATGTGTTGTATGCGGAGACCTCCA
GCGCTTTTTACGACGGTAGCGAACACGATGGAGAAGACACCTGGAAGGGT
CGTGTAGCGTCTCTTTTCTCACCCGTGCTAAAATTTGTAGGTGGCTCGCC
TGAGGCTCAAGGTgccgaaggaagagggaagcagcATGGAGCGAATTCCG
GAGAGGGCGGAATCGACGGGGGCTTACACGGCCAAGAGAATGACATTAAC
CGGAATAACCGACTAGCACAGCCTTTATCGATGGAAGAGAGCTGtgatga
aggaaaagatgtgTCGCCGAATCAGCTGGAGACatgtggaaaagaaaatg
aggaggggCTCATGGATGTGGAGCCGGTGTTCGATGACAGTGCTGCTagc
gaggacggagagaaAGTTTcaatgaaagaggaggaggtcgaagatgaagg
catggaggacgaggaattGGAAGTCGTAGAGGAGTTCAATCCCTTCCTGT
TCATTAAACAACTCCCTCCTTACGAGCACGTAGCGATTCAGGGGAAAATT
TGTCTACCACAACGAAAGCAAACTCGGTCATCACATACATTGGGCCCCTT
GACCCTTGTGCTGGACCTGGATGAGACCTTGGTGCATTGCACTGTGGAGC
CTGTGCCGGACCCAGACGTCGTTTTTCCGGTGGATTTTAACGGAGTGAGC
TATCAGGTGCATGTACGAAAGCGTCCGCACCTGGAAGAGTTCCTAGGTCG
CGTGTCTAAGATGTTTGAGGTCGTCGTCTTCACGGCGTCGCAGCAGGTCT
ATGCGGACGCGCTGCTTGACCTGATTGACCCTGGTCAGAGGCTGATAAAG
CATCGGCTCTTCAGGGATGCATGCCTTCCTGTCGAAGGCAATTACATCAA
GGACCTGCACGTTCTAGGCCGGGACATGGCACGCACGGTGCTGATTGACA
ATTCTCCGTATGCATATGGATACCAGATAGATAACGGCATTCCCATAGAG
AGTTGGTTTGAAGATCGTGACGACATGGAATTACTGAagcttcttccctt
tttggAGGAGTTGCAAAGAGTTGACGACGTCCGACCACTCATTCGCACAG
CATTTCAATCTCACCTCCGAGTGCACGAAGCCTAG

Synonyms

Publications