EWM25903.1, cds4773 (CDS) Nannochloropsis gaditana

Overview
NameEWM25903.1
Unique Namecds4773
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002464.1:344534..345055 -
Alignment locationCM002464.1:343401..344438 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM25903.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100048g23.10275.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:344534..345055 -
CM002464.1supercontigCM002464.1:343401..344438 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0008233peptidase activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Biological Process
TermDefinition
GO:0019538protein metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR026898PrsW
Homology
BLAST of EWM25903.1 vs. NCBI_GenBank
Match: gi|585107772|gb|EWM25903.1| (hypothetical protein Naga_100048g23 [Nannochloropsis gaditana])

HSP 1 Score: 1065.06 bits (2753), Expect = 0.000e+0
Identity = 519/519 (100.00%), Postives = 519/519 (100.00%), Query Frame = 0
Query:    1 MPKLLWKQISHRSDERNEKYEKSQCRKDFGTITRTTTRTTNPICTVSSIVNGDEGHEDQAIGLETGKSAENVERFTGIDGHTSLVQAASDHDEVIGVELGECAKSECAKSVESFSRKGRDASLVQTTATGVQSSTVLPAFFISFGCGRSIIVMLALYSAALAVATVIAHVQLHSGLILLSLLPAVFMMTYAQRLFARSVLRREMVLTFFLAILCMSPVVVVENLWYYVVLTKSHLDDAGDVPHSTGAISWAYRFLSAFVRAFLVAALFEEGAKFLALRRLRSLPHVNDPRAMVTYGICAGVALGTVENLFLYAFAYGIDVTLIRAILTVPMHGMTGMLTACALAEDVFLVPAPVFPAPASPVYRPWYRIIAAPVLFHGMFDFVDFFFPDRLQSLLIAVEASIVVTGFVYFRWKFLRLVKAVPVEDDIHCALRKEAESLDRTALEDVFVEETGAVDGVESTMREKASGQEAEERNRVGLWGRLTGEGSTMGPSNRYVGAVVGTACVFCTGMLLFLYFSPV 519
            MPKLLWKQISHRSDERNEKYEKSQCRKDFGTITRTTTRTTNPICTVSSIVNGDEGHEDQAIGLETGKSAENVERFTGIDGHTSLVQAASDHDEVIGVELGECAKSECAKSVESFSRKGRDASLVQTTATGVQSSTVLPAFFISFGCGRSIIVMLALYSAALAVATVIAHVQLHSGLILLSLLPAVFMMTYAQRLFARSVLRREMVLTFFLAILCMSPVVVVENLWYYVVLTKSHLDDAGDVPHSTGAISWAYRFLSAFVRAFLVAALFEEGAKFLALRRLRSLPHVNDPRAMVTYGICAGVALGTVENLFLYAFAYGIDVTLIRAILTVPMHGMTGMLTACALAEDVFLVPAPVFPAPASPVYRPWYRIIAAPVLFHGMFDFVDFFFPDRLQSLLIAVEASIVVTGFVYFRWKFLRLVKAVPVEDDIHCALRKEAESLDRTALEDVFVEETGAVDGVESTMREKASGQEAEERNRVGLWGRLTGEGSTMGPSNRYVGAVVGTACVFCTGMLLFLYFSPV
Sbjct:    1 MPKLLWKQISHRSDERNEKYEKSQCRKDFGTITRTTTRTTNPICTVSSIVNGDEGHEDQAIGLETGKSAENVERFTGIDGHTSLVQAASDHDEVIGVELGECAKSECAKSVESFSRKGRDASLVQTTATGVQSSTVLPAFFISFGCGRSIIVMLALYSAALAVATVIAHVQLHSGLILLSLLPAVFMMTYAQRLFARSVLRREMVLTFFLAILCMSPVVVVENLWYYVVLTKSHLDDAGDVPHSTGAISWAYRFLSAFVRAFLVAALFEEGAKFLALRRLRSLPHVNDPRAMVTYGICAGVALGTVENLFLYAFAYGIDVTLIRAILTVPMHGMTGMLTACALAEDVFLVPAPVFPAPASPVYRPWYRIIAAPVLFHGMFDFVDFFFPDRLQSLLIAVEASIVVTGFVYFRWKFLRLVKAVPVEDDIHCALRKEAESLDRTALEDVFVEETGAVDGVESTMREKASGQEAEERNRVGLWGRLTGEGSTMGPSNRYVGAVVGTACVFCTGMLLFLYFSPV 519          
BLAST of EWM25903.1 vs. NCBI_GenBank
Match: gi|553188370|ref|XP_005854783.1| (protease required for anti-sigma degradation [Nannochloropsis gaditana CCMP526] >gi|553188584|ref|XP_005854821.1| protease required for anti-sigma degradation [Nannochloropsis gaditana CCMP526] >gi|422294233|gb|EKU21533.1| protease required for anti-sigma degradation [Nannochloropsis gaditana CCMP526] >gi|422294272|gb|EKU21572.1| protease required for anti-sigma degradation [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 181.03 bits (458), Expect = 3.264e-48
Identity = 109/322 (33.85%), Postives = 174/322 (54.04%), Query Frame = 0
Query:  115 SRKGRDASLVQTTATGVQSSTVLPAFFISFGCGRSIIVMLALYSAALAVATVIAHVQLHS-GLILLSLLPAVFMMTYAQRLFARSVLRREMVLTFFLAILCMSPVVVVENLWYYVVLTKSHLDDAGDVPHSTGAISWAYRFLSAFVRAFLVAALFEEGAKFLALRRLRSLPHVNDPRAMVTYGICAGVALGTVENLFLYAFAYGIDVTLIRAILTVPMHGMTGMLTACALAEDVFLVPAPVFPAPASPVYRPWYRIIAAPVLFHGMFDFVDFFFPD-RLQSLLIAVEASIVVTGFVYFRWKFLRLVKAVPVEDDIHCALRKE 434
            +  G ++   Q TA    ++ +    + +  C  S     + Y   +  A +IA   L   GL+LLS+LPA+ ++++ +  F +SV+R +M++TFF A+L M P+V++EN+  Y ++ +++L   G               LS+F++A+L+A  FEE AK+LA+RR+    +V DPRA+V Y  CAG A GTVE+L +Y  +YG+   ++RA  +VP+H  TG++   +LAE  F                 WY+ +  PVL HG +DF  F F    L     A+   IV++ +VY R + L L+KA P E D H  +  E
Sbjct:   88 NNSGLESGHQQPTAVDRPNANLESTDYCTTSCASSFCKWFSGYILLITAAALIASRALRELGLVLLSVLPAITLLSFLEMRFRKSVIRMQMLITFFEAVLWMIPIVILENVTNYFLIVRTNLPKDGLC---------GMCILSSFLQAYLIAGFFEESAKYLAVRRIIYKSYVVDPRALVVYSCCAGSAFGTVEDL-MYNLSYGLGTAIVRAFTSVPLHCATGLIIGTSLAERKFF----------QQDTERWYKTLILPVLIHGTYDFASFLFASGNLAIAGFAIGVVIVISSYVYVRKRVLFLLKAFPEELDAHNMIANE 389          
BLAST of EWM25903.1 vs. NCBI_GenBank
Match: gi|873234777|emb|CEM01683.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 98.9821 bits (245), Expect = 3.700e-18
Identity = 90/309 (29.13%), Postives = 150/309 (48.54%), Query Frame = 0
Query:  140 FFISFGCGRSIIVMLALYSAALAVATVIAHVQLHSGLILLSLLPAVFMMTYAQRLFARSVLRREMVLTFFLAILCMSPVVVVENLWYYVVLTKSHLDDAGDVPHSTGAISWAYRFLSAFVRAFLVAALFEEGAKFLALRRLRSLPHVNDPRAMVTYGICAGVALGTVENLFLYAFAYGIDVT-----------LIRAILTVPMHGMTGMLTACALAEDVFLVPAPVFPAPASPVYRPWYRIIAAPVLFHGMFDF---VDFFFPDRLQ-SLLIAVEASIVVTGFVYFRWKFLRLVKAVPVEDDIHCALRK 433
            FF    CG +++  +     A+  A ++A      G +LL++ P++ +++Y   ++ R V   +M+ TF  AI  M PVV V  L  + +   SH+    D  + T  I WA       V A+++AAL EE  K++  RR+    HV DPR+++ Y + A      VEN +LY F+   + +           ++R +++VP H +TG++    L    FL                +YRI+  P+L HG ++F   V   +  RL+ SL +A+  ++++  F Y R   L L K VP+  D+H   RK
Sbjct:  250 FFTPSCCGSAVVFCVVYVGVAVGSA-LLAGTDETLGRMLLAVTPSILILSYFTLIYRRHVFLTQMLYTFLEAIGWMIPVVCVRVLVEWAM--ASHVQRWMDERNETALILWA------LVEAYILAALMEESLKYVCARRVLWKDHVADPRSLIGYSLAAANGFALVEN-WLYIFSDSNESSVLGLPEASVAGVLRMLISVPGHSLTGIIIGAILGRRKFL---------GKYFQTRFYRIMVWPILIHGTYNFVLVVTHMY--RLEWSLGLAIALALLLAAFFYSRHILLEL-KRVPLV-DVHRLWRK 535          
BLAST of EWM25903.1 vs. NCBI_GenBank
Match: gi|1129187682|gb|OLP93543.1| (Protease PrsW [Symbiodinium microadriaticum])

HSP 1 Score: 87.0409 bits (214), Expect = 1.896e-14
Identity = 73/257 (28.40%), Postives = 124/257 (48.25%), Query Frame = 0
Query:  129 TGVQSSTVLPAFFIS--FGCGRSIIVMLALYSAALAVATVIAHVQLHSGLILLSLLPAVFMMTYAQRLFARSVLRREMVLTFFLAILCMSPVVVVENLWYYVVLTKSHLDDAGDVPHSTGAISWAYRFLSA-FVRAFLVAALFEEGAKFLALRRLRSLPHVNDPRAMVTYGICAGVALGTVENLFLYAFAYGIDVTLIRAILTVPMHGMTGMLTACALAEDVFLVPAPVFPAPASPVYRPWYRIIAAPVLFHGMFDF 382
            +G+Q   + P+FF +   G G SI V LA  +A   +  V+      +   LLS +P +   ++ Q  F +SV   +M ++FF AI  + P++ +  + Y+ +  +  + D  +V  ++ A       L    ++A+L+ A  EE  K++ +RR+   P V DP A+  YG CAG+    +EN+ LY     +   L+RA   VP H + G+L    L+E  F +     P   S +  P       P++ HG  +F
Sbjct:   89 SGIQVEPLPPSFFTTSCLGWGVSIFVTLAFCTALCVLPYVLLPPLGLA---LLSFVPVLVFGSFVQVYFQKSVKLSQMAISFFEAIAWLMPLISIILIIYFPLGWRDWVSDCEEVSEASLASEVEVDCLGKRAIQAYLMTAFLEELLKYVCVRRILWFPFVADPTALCCYGGCAGLGFAALENV-LYVGTGSLATALLRAGTAVPNHLIYGLLHGAFLSEQRFSLKQRSCP---SFILTP-----MLPMILHGSHNF 333          
BLAST of EWM25903.1 vs. NCBI_GenBank
Match: gi|1101995772|ref|WP_071545639.1| (PrsW family intramembrane metalloprotease [Desulfovibrio dechloracetivorans] >gi|1101479680|gb|OIQ50182.1| Protease PrsW [Desulfovibrio dechloracetivorans])

HSP 1 Score: 63.5438 bits (153), Expect = 2.594e-7
Identity = 62/212 (29.25%), Postives = 99/212 (46.70%), Query Frame = 0
Query:  224 LWYYVVLTKSHLDDAGDVPHSTGAISWAYRFLSAFVRAFLVAALFEEGAKFLALRRL-RSLPHVNDPRAMVTYGICAGVALGTVENLFLYAFAYGIDVTLIRAILTVPMHGMTGMLTACALAEDVFLVPAPVFPAPASPVYRPWYRIIAAPVLFHGMFDFVDFFFPDRLQSLLIAVEASIVVTGFVYFRWKFLRLVKAVPVEDDIHCALRKE 434
            L+ ++VL  S +    D P+ TGAI           +AFL+AAL EEG K + LRR   + P  ++P   + YG+   +   T ENL L+    G+ V + RA L VP H M G +    +    F           S +Y    + +   +LFHG++DF      +  Q++ IA+ +S+ +   V F      +V+ V V      A+++E
Sbjct:   50 LYPFLVLVDSGVPP--DNPYLTGAI-----------QAFLLAALPEEGFKLIVLRRYCVNHPAFDEPMDGIVYGVTVSLGFATAENL-LFVLDGGVHVAVGRAFLAVPCHAMVGAVMGYHVGLAAF------SRGERSGLY---VKALLLAILFHGLYDFAPLILRNA-QAMGIAIPSSVSLGLNVLFGAVIFVMVRYVAVLTRSMKAIQRE 237          
BLAST of EWM25903.1 vs. NCBI_GenBank
Match: gi|506387860|ref|WP_015907579.1| (PrsW family intramembrane metalloprotease [Caldicellulosiruptor bescii] >gi|222455905|gb|ACM60167.1| conserved hypothetical protein [Caldicellulosiruptor bescii DSM 6725] >gi|1154420046|emb|SKC63047.1| Membrane proteinase PrsW, cleaves anti-sigma factor RsiW, M82 family [Caldicellulosiruptor bescii] >gi|1154421801|emb|SKC49493.1| Membrane proteinase PrsW, cleaves anti-sigma factor RsiW, M82 family [Caldicellulosiruptor bescii] >gi|1154423674|emb|SKC38011.1| Membrane proteinase PrsW, cleaves anti-sigma factor RsiW, M82 family [Caldicellulosiruptor bescii] >gi|1160148579|emb|SLL37876.1| Membrane proteinase PrsW, cleaves anti-sigma factor RsiW, M82 family [Caldicellulosiruptor bescii] >gi|1206881367|emb|SMR94338.1| Membrane proteinase PrsW, cleaves anti-sigma factor RsiW, M82 family [Caldicellulosiruptor bescii] >gi|1206883427|emb|SMR89484.1| Membrane proteinase PrsW, cleaves anti-sigma factor RsiW, M82 family [Caldicellulosiruptor bescii] >gi|1206885967|emb|SMR93356.1| Membrane proteinase PrsW, cleaves anti-sigma factor RsiW, M82 family [Caldicellulosiruptor bescii] >gi|1206888624|emb|SMR97212.1| Membrane proteinase PrsW, cleaves anti-sigma factor RsiW, M82 family [Caldicellulosiruptor bescii])

HSP 1 Score: 61.6178 bits (148), Expect = 3.779e-7
Identity = 63/219 (28.77%), Postives = 99/219 (45.21%), Query Frame = 0
Query:  176 LILLSLLPAVFMMTYAQRLFARSVLRRE----MVLTFFLAILCMSPVVVVENLWYYVVLTKSHLDDAGDVPHSTGAISWAYRFLSAFVRAFLVAALFEEGAK-FLALRRLRSLPHVNDPRAMVTYGICAGVALGTVENL------FLYAFAYGIDVTLIRAILTVPMHGMTGMLTACALAEDVFLVPAPVFPAPASPVYRPWYRIIAAPVLFHGMFDFV 383
            LI+LS+ P++F+  Y   ++ R    +E    ++ TF L IL  S VV +E   Y+++              + G+IS + R       AF+VA L EE  K  + LR     PH N P   + Y + + V    +EN+      F  ++   I V ++R ++ VP H M G++    L    F        AP S  Y  +   +  P+L HG +DFV
Sbjct:    6 LIILSIAPSLFIALY---IYFRDKFEKEPLHLLLKTFILGILISSIVVPIE---YFLM--------------AYGSISASSRLSFIAFEAFIVAGLTEEYFKRLVVLRVAFDTPHFNQPFDGIVYCVFSAVGFAAIENVGYVYQAFQASYDAAISVLVLRGVMAVPAHAMFGIVMGYYLGFAKF--------APESRSYWYFKASLIIPMLLHGFYDFV 196          
BLAST of EWM25903.1 vs. NCBI_GenBank
Match: gi|1012143452|gb|KYP14008.1| (hypothetical protein A1D16_02695 [Flavihumibacter sp. CACIAM 22H1])

HSP 1 Score: 62.003 bits (149), Expect = 3.918e-7
Identity = 52/170 (30.59%), Postives = 78/170 (45.88%), Query Frame = 0
Query:  176 LILLSLLPAVFMM--TYAQRLFARSVLRREMVLTFFLAILCMSPVVVVENLWYYVVLTKSHLDDAGDVPHSTGAISWAYRFLSAFVRAFLVAALFEEGAKF-----LALRRLRSLPHVNDPRAMVTYGICAGVALGTVENLFLYAFAYGIDVTLIRAILTVPMHGMTGML 338
            L+ L+L P + +M   Y+   F +  LR  ++ +F L IL + PV+V+E            L     +        W Y  L +F+    V A  EE AK+      A RR    P  N+P   + YG+   +   T+EN+F Y F YG    L+R +L+VP H   G+L
Sbjct:    3 LLALALAPGIAIMWFIYSADKFEKEPLR-ALLFSFLLGILAIVPVIVLE------------LGGTAVLGELLPKEGWVYYGLLSFI----VVAFTEELAKWSMVRWYAYRR----PFFNEPFDGIVYGVMVAMGFATIENIF-YVFQYGWQTGLLRMVLSVPAHATFGVL 150          
BLAST of EWM25903.1 vs. NCBI_GenBank
Match: gi|873230859|emb|CEM09853.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 62.3882 bits (150), Expect = 8.425e-7
Identity = 69/284 (24.30%), Postives = 113/284 (39.79%), Query Frame = 0
Query:  132 QSSTVLPAFFISFGCGRSIIVMLALYSAALAVATVIAHVQLHSGLILLSLLPAVFMMTYAQRLFARSVLRREM-------VLTFFLAILCMSPVVVVENLWYYVVLTKSHLDDAGDVPHSTGAISWAYRFLSAFVRAFLVAALFEEGAKFLALRRLRSLPHVNDPRAMVTYGICAGVALGTVEN-----------------LFLYAFAYGIDVTLIRAILTVPMHGMTGMLTACALAEDVFLVPAPVFPAPASPVYRPWYRIIAA---PVLFHGMFDFVDFFFP 388
            QS  +  A F   G       +L +  A+L     +    +++G++LL+  P++ +  Y  + F    L  +M        L  FL I+    V++   L   +    +  ++  ++    G + W        + + L+  + EE  KFLA+RR+    HV DPRA++ YGI +      +EN                 L     + GI     R I++VP H + G L    LA   F              +  W+ + AA   P L H +FDFV  F P
Sbjct:   24 QSVALFSAGFFQRGTWAVFAYLLLVVVASLFALGFVLGQLVNTGIMLLATGPSIIIQLYLIQRFTNQFLPEQMFFVVCESTLWMFLLIVPNVLVMLAAKLLVRIFFPMTPPNEIEEL--LVGNVLWC-------ILSPLIIGIVEESIKFLAVRRVLWKDHVCDPRALIVYGITSANTFAVLENWNYVIGTVASPTTPGLRLGPRWVSNGIWTAWQRLIVSVPGHCLDGSLQGSILAHYKFF------------NFLGWFGVWAAVLFPALSHWLFDFVATFIP 286          
The following BLAST results are available for this feature:
BLAST of EWM25903.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 8
Match NameE-valueIdentityDescription
gi|585107772|gb|EWM25903.1|0.000e+0100.00hypothetical protein Naga_100048g23 [Nannochlorops... [more]
gi|553188370|ref|XP_005854783.1|3.264e-4833.85protease required for anti-sigma degradation [Nann... [more]
gi|873234777|emb|CEM01683.1|3.700e-1829.13unnamed protein product [Vitrella brassicaformis C... [more]
gi|1129187682|gb|OLP93543.1|1.896e-1428.40Protease PrsW [Symbiodinium microadriaticum][more]
gi|1101995772|ref|WP_071545639.1|2.594e-729.25PrsW family intramembrane metalloprotease [Desulfo... [more]
gi|506387860|ref|WP_015907579.1|3.779e-728.77PrsW family intramembrane metalloprotease [Caldice... [more]
gi|1012143452|gb|KYP14008.1|3.918e-730.59hypothetical protein A1D16_02695 [Flavihumibacter ... [more]
gi|873230859|emb|CEM09853.1|8.425e-724.30unnamed protein product [Vitrella brassicaformis C... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4785rna4785Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications