EWM25903.1, cds4773 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM25903.1 vs. NCBI_GenBank
Match: gi|585107772|gb|EWM25903.1| (hypothetical protein Naga_100048g23 [Nannochloropsis gaditana]) HSP 1 Score: 1065.06 bits (2753), Expect = 0.000e+0 Identity = 519/519 (100.00%), Postives = 519/519 (100.00%), Query Frame = 0 Query: 1 MPKLLWKQISHRSDERNEKYEKSQCRKDFGTITRTTTRTTNPICTVSSIVNGDEGHEDQAIGLETGKSAENVERFTGIDGHTSLVQAASDHDEVIGVELGECAKSECAKSVESFSRKGRDASLVQTTATGVQSSTVLPAFFISFGCGRSIIVMLALYSAALAVATVIAHVQLHSGLILLSLLPAVFMMTYAQRLFARSVLRREMVLTFFLAILCMSPVVVVENLWYYVVLTKSHLDDAGDVPHSTGAISWAYRFLSAFVRAFLVAALFEEGAKFLALRRLRSLPHVNDPRAMVTYGICAGVALGTVENLFLYAFAYGIDVTLIRAILTVPMHGMTGMLTACALAEDVFLVPAPVFPAPASPVYRPWYRIIAAPVLFHGMFDFVDFFFPDRLQSLLIAVEASIVVTGFVYFRWKFLRLVKAVPVEDDIHCALRKEAESLDRTALEDVFVEETGAVDGVESTMREKASGQEAEERNRVGLWGRLTGEGSTMGPSNRYVGAVVGTACVFCTGMLLFLYFSPV 519 MPKLLWKQISHRSDERNEKYEKSQCRKDFGTITRTTTRTTNPICTVSSIVNGDEGHEDQAIGLETGKSAENVERFTGIDGHTSLVQAASDHDEVIGVELGECAKSECAKSVESFSRKGRDASLVQTTATGVQSSTVLPAFFISFGCGRSIIVMLALYSAALAVATVIAHVQLHSGLILLSLLPAVFMMTYAQRLFARSVLRREMVLTFFLAILCMSPVVVVENLWYYVVLTKSHLDDAGDVPHSTGAISWAYRFLSAFVRAFLVAALFEEGAKFLALRRLRSLPHVNDPRAMVTYGICAGVALGTVENLFLYAFAYGIDVTLIRAILTVPMHGMTGMLTACALAEDVFLVPAPVFPAPASPVYRPWYRIIAAPVLFHGMFDFVDFFFPDRLQSLLIAVEASIVVTGFVYFRWKFLRLVKAVPVEDDIHCALRKEAESLDRTALEDVFVEETGAVDGVESTMREKASGQEAEERNRVGLWGRLTGEGSTMGPSNRYVGAVVGTACVFCTGMLLFLYFSPV Sbjct: 1 MPKLLWKQISHRSDERNEKYEKSQCRKDFGTITRTTTRTTNPICTVSSIVNGDEGHEDQAIGLETGKSAENVERFTGIDGHTSLVQAASDHDEVIGVELGECAKSECAKSVESFSRKGRDASLVQTTATGVQSSTVLPAFFISFGCGRSIIVMLALYSAALAVATVIAHVQLHSGLILLSLLPAVFMMTYAQRLFARSVLRREMVLTFFLAILCMSPVVVVENLWYYVVLTKSHLDDAGDVPHSTGAISWAYRFLSAFVRAFLVAALFEEGAKFLALRRLRSLPHVNDPRAMVTYGICAGVALGTVENLFLYAFAYGIDVTLIRAILTVPMHGMTGMLTACALAEDVFLVPAPVFPAPASPVYRPWYRIIAAPVLFHGMFDFVDFFFPDRLQSLLIAVEASIVVTGFVYFRWKFLRLVKAVPVEDDIHCALRKEAESLDRTALEDVFVEETGAVDGVESTMREKASGQEAEERNRVGLWGRLTGEGSTMGPSNRYVGAVVGTACVFCTGMLLFLYFSPV 519
BLAST of EWM25903.1 vs. NCBI_GenBank
Match: gi|553188370|ref|XP_005854783.1| (protease required for anti-sigma degradation [Nannochloropsis gaditana CCMP526] >gi|553188584|ref|XP_005854821.1| protease required for anti-sigma degradation [Nannochloropsis gaditana CCMP526] >gi|422294233|gb|EKU21533.1| protease required for anti-sigma degradation [Nannochloropsis gaditana CCMP526] >gi|422294272|gb|EKU21572.1| protease required for anti-sigma degradation [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 181.03 bits (458), Expect = 3.264e-48 Identity = 109/322 (33.85%), Postives = 174/322 (54.04%), Query Frame = 0 Query: 115 SRKGRDASLVQTTATGVQSSTVLPAFFISFGCGRSIIVMLALYSAALAVATVIAHVQLHS-GLILLSLLPAVFMMTYAQRLFARSVLRREMVLTFFLAILCMSPVVVVENLWYYVVLTKSHLDDAGDVPHSTGAISWAYRFLSAFVRAFLVAALFEEGAKFLALRRLRSLPHVNDPRAMVTYGICAGVALGTVENLFLYAFAYGIDVTLIRAILTVPMHGMTGMLTACALAEDVFLVPAPVFPAPASPVYRPWYRIIAAPVLFHGMFDFVDFFFPD-RLQSLLIAVEASIVVTGFVYFRWKFLRLVKAVPVEDDIHCALRKE 434 + G ++ Q TA ++ + + + C S + Y + A +IA L GL+LLS+LPA+ ++++ + F +SV+R +M++TFF A+L M P+V++EN+ Y ++ +++L G LS+F++A+L+A FEE AK+LA+RR+ +V DPRA+V Y CAG A GTVE+L +Y +YG+ ++RA +VP+H TG++ +LAE F WY+ + PVL HG +DF F F L A+ IV++ +VY R + L L+KA P E D H + E Sbjct: 88 NNSGLESGHQQPTAVDRPNANLESTDYCTTSCASSFCKWFSGYILLITAAALIASRALRELGLVLLSVLPAITLLSFLEMRFRKSVIRMQMLITFFEAVLWMIPIVILENVTNYFLIVRTNLPKDGLC---------GMCILSSFLQAYLIAGFFEESAKYLAVRRIIYKSYVVDPRALVVYSCCAGSAFGTVEDL-MYNLSYGLGTAIVRAFTSVPLHCATGLIIGTSLAERKFF----------QQDTERWYKTLILPVLIHGTYDFASFLFASGNLAIAGFAIGVVIVISSYVYVRKRVLFLLKAFPEELDAHNMIANE 389
BLAST of EWM25903.1 vs. NCBI_GenBank
Match: gi|873234777|emb|CEM01683.1| (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 98.9821 bits (245), Expect = 3.700e-18 Identity = 90/309 (29.13%), Postives = 150/309 (48.54%), Query Frame = 0 Query: 140 FFISFGCGRSIIVMLALYSAALAVATVIAHVQLHSGLILLSLLPAVFMMTYAQRLFARSVLRREMVLTFFLAILCMSPVVVVENLWYYVVLTKSHLDDAGDVPHSTGAISWAYRFLSAFVRAFLVAALFEEGAKFLALRRLRSLPHVNDPRAMVTYGICAGVALGTVENLFLYAFAYGIDVT-----------LIRAILTVPMHGMTGMLTACALAEDVFLVPAPVFPAPASPVYRPWYRIIAAPVLFHGMFDF---VDFFFPDRLQ-SLLIAVEASIVVTGFVYFRWKFLRLVKAVPVEDDIHCALRK 433 FF CG +++ + A+ A ++A G +LL++ P++ +++Y ++ R V +M+ TF AI M PVV V L + + SH+ D + T I WA V A+++AAL EE K++ RR+ HV DPR+++ Y + A VEN +LY F+ + + ++R +++VP H +TG++ L FL +YRI+ P+L HG ++F V + RL+ SL +A+ ++++ F Y R L L K VP+ D+H RK Sbjct: 250 FFTPSCCGSAVVFCVVYVGVAVGSA-LLAGTDETLGRMLLAVTPSILILSYFTLIYRRHVFLTQMLYTFLEAIGWMIPVVCVRVLVEWAM--ASHVQRWMDERNETALILWA------LVEAYILAALMEESLKYVCARRVLWKDHVADPRSLIGYSLAAANGFALVEN-WLYIFSDSNESSVLGLPEASVAGVLRMLISVPGHSLTGIIIGAILGRRKFL---------GKYFQTRFYRIMVWPILIHGTYNFVLVVTHMY--RLEWSLGLAIALALLLAAFFYSRHILLEL-KRVPLV-DVHRLWRK 535
BLAST of EWM25903.1 vs. NCBI_GenBank
Match: gi|1129187682|gb|OLP93543.1| (Protease PrsW [Symbiodinium microadriaticum]) HSP 1 Score: 87.0409 bits (214), Expect = 1.896e-14 Identity = 73/257 (28.40%), Postives = 124/257 (48.25%), Query Frame = 0 Query: 129 TGVQSSTVLPAFFIS--FGCGRSIIVMLALYSAALAVATVIAHVQLHSGLILLSLLPAVFMMTYAQRLFARSVLRREMVLTFFLAILCMSPVVVVENLWYYVVLTKSHLDDAGDVPHSTGAISWAYRFLSA-FVRAFLVAALFEEGAKFLALRRLRSLPHVNDPRAMVTYGICAGVALGTVENLFLYAFAYGIDVTLIRAILTVPMHGMTGMLTACALAEDVFLVPAPVFPAPASPVYRPWYRIIAAPVLFHGMFDF 382 +G+Q + P+FF + G G SI V LA +A + V+ + LLS +P + ++ Q F +SV +M ++FF AI + P++ + + Y+ + + + D +V ++ A L ++A+L+ A EE K++ +RR+ P V DP A+ YG CAG+ +EN+ LY + L+RA VP H + G+L L+E F + P S + P P++ HG +F Sbjct: 89 SGIQVEPLPPSFFTTSCLGWGVSIFVTLAFCTALCVLPYVLLPPLGLA---LLSFVPVLVFGSFVQVYFQKSVKLSQMAISFFEAIAWLMPLISIILIIYFPLGWRDWVSDCEEVSEASLASEVEVDCLGKRAIQAYLMTAFLEELLKYVCVRRILWFPFVADPTALCCYGGCAGLGFAALENV-LYVGTGSLATALLRAGTAVPNHLIYGLLHGAFLSEQRFSLKQRSCP---SFILTP-----MLPMILHGSHNF 333
BLAST of EWM25903.1 vs. NCBI_GenBank
Match: gi|1101995772|ref|WP_071545639.1| (PrsW family intramembrane metalloprotease [Desulfovibrio dechloracetivorans] >gi|1101479680|gb|OIQ50182.1| Protease PrsW [Desulfovibrio dechloracetivorans]) HSP 1 Score: 63.5438 bits (153), Expect = 2.594e-7 Identity = 62/212 (29.25%), Postives = 99/212 (46.70%), Query Frame = 0 Query: 224 LWYYVVLTKSHLDDAGDVPHSTGAISWAYRFLSAFVRAFLVAALFEEGAKFLALRRL-RSLPHVNDPRAMVTYGICAGVALGTVENLFLYAFAYGIDVTLIRAILTVPMHGMTGMLTACALAEDVFLVPAPVFPAPASPVYRPWYRIIAAPVLFHGMFDFVDFFFPDRLQSLLIAVEASIVVTGFVYFRWKFLRLVKAVPVEDDIHCALRKE 434 L+ ++VL S + D P+ TGAI +AFL+AAL EEG K + LRR + P ++P + YG+ + T ENL L+ G+ V + RA L VP H M G + + F S +Y + + +LFHG++DF + Q++ IA+ +S+ + V F +V+ V V A+++E Sbjct: 50 LYPFLVLVDSGVPP--DNPYLTGAI-----------QAFLLAALPEEGFKLIVLRRYCVNHPAFDEPMDGIVYGVTVSLGFATAENL-LFVLDGGVHVAVGRAFLAVPCHAMVGAVMGYHVGLAAF------SRGERSGLY---VKALLLAILFHGLYDFAPLILRNA-QAMGIAIPSSVSLGLNVLFGAVIFVMVRYVAVLTRSMKAIQRE 237
BLAST of EWM25903.1 vs. NCBI_GenBank
Match: gi|506387860|ref|WP_015907579.1| (PrsW family intramembrane metalloprotease [Caldicellulosiruptor bescii] >gi|222455905|gb|ACM60167.1| conserved hypothetical protein [Caldicellulosiruptor bescii DSM 6725] >gi|1154420046|emb|SKC63047.1| Membrane proteinase PrsW, cleaves anti-sigma factor RsiW, M82 family [Caldicellulosiruptor bescii] >gi|1154421801|emb|SKC49493.1| Membrane proteinase PrsW, cleaves anti-sigma factor RsiW, M82 family [Caldicellulosiruptor bescii] >gi|1154423674|emb|SKC38011.1| Membrane proteinase PrsW, cleaves anti-sigma factor RsiW, M82 family [Caldicellulosiruptor bescii] >gi|1160148579|emb|SLL37876.1| Membrane proteinase PrsW, cleaves anti-sigma factor RsiW, M82 family [Caldicellulosiruptor bescii] >gi|1206881367|emb|SMR94338.1| Membrane proteinase PrsW, cleaves anti-sigma factor RsiW, M82 family [Caldicellulosiruptor bescii] >gi|1206883427|emb|SMR89484.1| Membrane proteinase PrsW, cleaves anti-sigma factor RsiW, M82 family [Caldicellulosiruptor bescii] >gi|1206885967|emb|SMR93356.1| Membrane proteinase PrsW, cleaves anti-sigma factor RsiW, M82 family [Caldicellulosiruptor bescii] >gi|1206888624|emb|SMR97212.1| Membrane proteinase PrsW, cleaves anti-sigma factor RsiW, M82 family [Caldicellulosiruptor bescii]) HSP 1 Score: 61.6178 bits (148), Expect = 3.779e-7 Identity = 63/219 (28.77%), Postives = 99/219 (45.21%), Query Frame = 0 Query: 176 LILLSLLPAVFMMTYAQRLFARSVLRRE----MVLTFFLAILCMSPVVVVENLWYYVVLTKSHLDDAGDVPHSTGAISWAYRFLSAFVRAFLVAALFEEGAK-FLALRRLRSLPHVNDPRAMVTYGICAGVALGTVENL------FLYAFAYGIDVTLIRAILTVPMHGMTGMLTACALAEDVFLVPAPVFPAPASPVYRPWYRIIAAPVLFHGMFDFV 383 LI+LS+ P++F+ Y ++ R +E ++ TF L IL S VV +E Y+++ + G+IS + R AF+VA L EE K + LR PH N P + Y + + V +EN+ F ++ I V ++R ++ VP H M G++ L F AP S Y + + P+L HG +DFV Sbjct: 6 LIILSIAPSLFIALY---IYFRDKFEKEPLHLLLKTFILGILISSIVVPIE---YFLM--------------AYGSISASSRLSFIAFEAFIVAGLTEEYFKRLVVLRVAFDTPHFNQPFDGIVYCVFSAVGFAAIENVGYVYQAFQASYDAAISVLVLRGVMAVPAHAMFGIVMGYYLGFAKF--------APESRSYWYFKASLIIPMLLHGFYDFV 196
BLAST of EWM25903.1 vs. NCBI_GenBank
Match: gi|1012143452|gb|KYP14008.1| (hypothetical protein A1D16_02695 [Flavihumibacter sp. CACIAM 22H1]) HSP 1 Score: 62.003 bits (149), Expect = 3.918e-7 Identity = 52/170 (30.59%), Postives = 78/170 (45.88%), Query Frame = 0 Query: 176 LILLSLLPAVFMM--TYAQRLFARSVLRREMVLTFFLAILCMSPVVVVENLWYYVVLTKSHLDDAGDVPHSTGAISWAYRFLSAFVRAFLVAALFEEGAKF-----LALRRLRSLPHVNDPRAMVTYGICAGVALGTVENLFLYAFAYGIDVTLIRAILTVPMHGMTGML 338 L+ L+L P + +M Y+ F + LR ++ +F L IL + PV+V+E L + W Y L +F+ V A EE AK+ A RR P N+P + YG+ + T+EN+F Y F YG L+R +L+VP H G+L Sbjct: 3 LLALALAPGIAIMWFIYSADKFEKEPLR-ALLFSFLLGILAIVPVIVLE------------LGGTAVLGELLPKEGWVYYGLLSFI----VVAFTEELAKWSMVRWYAYRR----PFFNEPFDGIVYGVMVAMGFATIENIF-YVFQYGWQTGLLRMVLSVPAHATFGVL 150
BLAST of EWM25903.1 vs. NCBI_GenBank
Match: gi|873230859|emb|CEM09853.1| (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 62.3882 bits (150), Expect = 8.425e-7 Identity = 69/284 (24.30%), Postives = 113/284 (39.79%), Query Frame = 0 Query: 132 QSSTVLPAFFISFGCGRSIIVMLALYSAALAVATVIAHVQLHSGLILLSLLPAVFMMTYAQRLFARSVLRREM-------VLTFFLAILCMSPVVVVENLWYYVVLTKSHLDDAGDVPHSTGAISWAYRFLSAFVRAFLVAALFEEGAKFLALRRLRSLPHVNDPRAMVTYGICAGVALGTVEN-----------------LFLYAFAYGIDVTLIRAILTVPMHGMTGMLTACALAEDVFLVPAPVFPAPASPVYRPWYRIIAA---PVLFHGMFDFVDFFFP 388 QS + A F G +L + A+L + +++G++LL+ P++ + Y + F L +M L FL I+ V++ L + + ++ ++ G + W + + L+ + EE KFLA+RR+ HV DPRA++ YGI + +EN L + GI R I++VP H + G L LA F + W+ + AA P L H +FDFV F P Sbjct: 24 QSVALFSAGFFQRGTWAVFAYLLLVVVASLFALGFVLGQLVNTGIMLLATGPSIIIQLYLIQRFTNQFLPEQMFFVVCESTLWMFLLIVPNVLVMLAAKLLVRIFFPMTPPNEIEEL--LVGNVLWC-------ILSPLIIGIVEESIKFLAVRRVLWKDHVCDPRALIVYGITSANTFAVLENWNYVIGTVASPTTPGLRLGPRWVSNGIWTAWQRLIVSVPGHCLDGSLQGSILAHYKFF------------NFLGWFGVWAAVLFPALSHWLFDFVATFIP 286 The following BLAST results are available for this feature:
BLAST of EWM25903.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 8
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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